AT3G24860
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016170
Physical Location & Seq
Forward (+)
9073623 .. 9074682
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24860.1

Sequence Viewer

Length: 933 bp
ATGGCGACGCCTTCGCCGACCTCCTCTCCTCCCTCTGATTCAAACCCTAATTCTGCCGCTACTCCGCCGCATCAGAAACAACCACCCTCTCCTCCTCAACCCACGAATCCATCCTCTCCACCACCGCACACCACCGTCGTAGCTTTAGCCGCATCAACCTCCGCCGTCGCCAGAAAAACCCAACCTGTTCTCTGGACTCAAGACGAGACCCTCCTCTTAATCGAATCATACAAAGAGAAATGGTTCGCAATTGGTCGTGGTCCTCTAAAATCAACTCACTGGGAAGAGATCGCCGTTGCTGCCTCATCTCGTTCCGGCGTTGAACGGACATCTACACAGTGTAGGCATAAGATCGAGAAGATGCGTAAAAGATTCCGATCTGAGAGACAGAGTATGGGACCTATCTCAATTTGGCCTTTCTATAATCAAATGGAGGAATTGGATTCTTCAAATCCTGCTCCGATCTCAGCTCGTCCTCTCACTCGTCTTCCTCCTAATTCGAATAATCGCTACGTAGACGACGAAGAAGAAGATGAAGAAGAGGATAACAATAACTACGAAGAAGAGGAAGAAGAAGATGAGAGACAGAGCAAATCGAGGAGTATTAATTACATATTGAGAAGACCTGGAACTGTTAACAGATTTGCTGGAGTTGGTGGAGGATTGTTGTCATGGGGACAAAAAGAGAGATCATCGAAGAGGAAGAGGAACGATGGAGACGGTGGTGAGAGGCGGAGGAAAGGAATGCGAGCCGTTGCAGCGGAGATTAGGGCGTTTGCTGAGAGAGTAATGGTAATGGAGAAGAAGAAGATTGAGTTTGCTAAAGAGACTGTGAGACTTCGTAAGGAAATGGAGATTCGTAGAATCAATTTGATTCAGAGTTCTCAAACTCAGCTTCTTCAATTTATCAACAATGCTTTTGATTCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

310

Amino Acids

35.19

Weight (kDa)

9.23

Isoelectric Point (pI)

82.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 65 - 147 5.2e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AciI CCGC 8 cut(s) 57, 65, 68, 125, 150, 162, 733, 761
AcyI GRCGYC 1 cut(s) 8
AgsI TTSAA 4 cut(s) 42, 323, 450, 902
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 3 cut(s) 143, 470, 895
AluI AGCT 3 cut(s) 143, 470, 895
Alw26I GTCTC 6 cut(s) 200, 379, 577, 711, 821, 829
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 299, 758
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 260, 398
AsuHPI GGTGA 1 cut(s) 737
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 2 cut(s) 260, 398
BbsI GAAGAC 2 cut(s) 479, 628
BbvI GCAGC 2 cut(s) 286, 770
BccI CCATC 2 cut(s) 118, 707
BceAI ACGGC 3 cut(s) 149, 278, 737
BciT130I CCWGG 1 cut(s) 627
BcoDI GTCTC 6 cut(s) 200, 379, 577, 711, 821, 829
BisI GCNGC 5 cut(s) 57, 68, 150, 300, 759
BlsI GCNGC 5 cut(s) 58, 69, 151, 301, 760
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 2 cut(s) 260, 398
BmgT120I GGNCC 2 cut(s) 260, 398
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 627
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 79, 161, 351
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 479, 628
BpmI CTGGAG 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 110
BseJI GATNNNNATC 1 cut(s) 376
BseMII CTCAG 4 cut(s) 372, 480, 771, 905
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 6 cut(s) 13, 18, 81, 84, 203, 613
BseXI GCAGC 2 cut(s) 286, 770
BshFI GGCC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 2 cut(s) 411, 690
BsmAI GTCTC 6 cut(s) 200, 379, 577, 711, 821, 829
BsmBI CGTCTC 1 cut(s) 711
BsmFI GGGAC 2 cut(s) 411, 690
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 500
Bsp143I GATC 5 cut(s) 288, 351, 377, 462, 689
BspACI CCGC 8 cut(s) 57, 65, 68, 125, 150, 162, 733, 761
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 4 cut(s) 373, 479, 772, 904
BspLI GGNNCC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 284
BssMI GATC 5 cut(s) 288, 351, 377, 462, 689
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 5 cut(s) 136, 339, 634, 722, 832
Bst6I CTCTTC 5 cut(s) 279, 534, 558, 692, 698
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 514
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 4 cut(s) 381, 466, 780, 891
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 5 cut(s) 291, 354, 380, 465, 692
BstMAI GTCTC 6 cut(s) 200, 379, 577, 711, 821, 829
BstMBI GATC 5 cut(s) 288, 351, 377, 462, 689
BstMWI GCNNNNNNNGC 3 cut(s) 149, 299, 758
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 1 cut(s) 625
BstSNI TACGTA 1 cut(s) 514
BstV1I GCAGC 2 cut(s) 286, 770
BstV2I GAAGAC 2 cut(s) 479, 628
BsuRI GGCC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 2 cut(s) 277, 344
Cac8I GCNNGC 1 cut(s) 750
Cfr13I GGNCC 2 cut(s) 260, 398
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 672
CviJI RGCY 6 cut(s) 143, 149, 415, 470, 752, 895
CviKI_1 RGCY 6 cut(s) 143, 149, 415, 470, 752, 895
DdeI CTNAG 4 cut(s) 381, 466, 780, 891
DpnI GATC 5 cut(s) 290, 353, 379, 464, 691
DpnII GATC 5 cut(s) 288, 351, 377, 462, 689
Eam1104I CTCTTC 5 cut(s) 279, 534, 558, 692, 698
EarI CTCTTC 5 cut(s) 279, 534, 558, 692, 698
EciI GGCGGA 3 cut(s) 54, 151, 748
Eco105I TACGTA 1 cut(s) 514
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 260, 398
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 625
Esp3I CGTCTC 1 cut(s) 711
FaeI CATG 1 cut(s) 675
FaiI YATR 6 cut(s) 229, 348, 395, 423, 614, 673
FaqI GGGAC 2 cut(s) 411, 690
FatI CATG 1 cut(s) 671
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 5 cut(s) 57, 68, 150, 300, 759
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 5 cut(s) 57, 68, 150, 300, 759
GluI GCNGC 5 cut(s) 57, 68, 150, 300, 759
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 1 cut(s) 675
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 517, 637
Hpy188I TCNGA 6 cut(s) 37, 75, 377, 382, 462, 879
Hpy188III TCNNGA 3 cut(s) 193, 200, 355
Hpy8I GTNNAC 2 cut(s) 517, 637
Hpy99I CGWCG 4 cut(s) 10, 140, 170, 524
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 5 cut(s) 136, 339, 634, 722, 832
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 1 cut(s) 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 299, 758
HpyF3I CTNAG 4 cut(s) 381, 466, 780, 891
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 5 cut(s) 288, 351, 377, 462, 689
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 9 cut(s) 178, 184, 198, 265, 328, 468, 612, 633, 639
Lsp1109I GCAGC 2 cut(s) 286, 770
LweI GCATC 3 cut(s) 79, 161, 351
MaeII ACGT 1 cut(s) 513
MalI GATC 5 cut(s) 290, 353, 379, 464, 691
MboI GATC 5 cut(s) 288, 351, 377, 462, 689
MfeI CAATTG 1 cut(s) 249
MluCI AATT 8 cut(s) 49, 249, 408, 437, 496, 607, 868, 902
MlyI GAGTC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 218, 606, 636
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 627
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 149, 299, 758
NdeII GATC 5 cut(s) 288, 351, 377, 462, 689
NlaIII CATG 1 cut(s) 675
NlaIV GGNNCC 1 cut(s) 399
NspV TTCGAA 1 cut(s) 500
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 519
PctI GAATGC 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 9 cut(s) 38, 106, 224, 372, 443, 856, 864, 874, 923
PkrI GCNGC 5 cut(s) 58, 69, 151, 301, 760
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 260, 398
PspPPI RGGWCCY 1 cut(s) 398
SaqAI TTAA 3 cut(s) 218, 606, 636
SatI GCNGC 5 cut(s) 57, 68, 150, 300, 759
Sau3AI GATC 5 cut(s) 288, 351, 377, 462, 689
Sau96I GGNCC 2 cut(s) 260, 398
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 627
SetI ASST 9 cut(s) 23, 145, 161, 187, 403, 472, 516, 628, 897
SfaNI GCATC 3 cut(s) 79, 161, 351
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 2 cut(s) 260, 398
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SnaBI TACGTA 1 cut(s) 514
Sse9I AATT 8 cut(s) 49, 249, 408, 437, 496, 607, 868, 902
SsiI CCGC 8 cut(s) 57, 65, 68, 125, 150, 162, 733, 761
StyD4I CCNGG 1 cut(s) 625
TaaI ACNGT 5 cut(s) 136, 339, 634, 722, 832
TaiI ACGT 1 cut(s) 516
TaqI TCGA 5 cut(s) 222, 354, 500, 596, 695
TasI AATT 8 cut(s) 49, 249, 408, 437, 496, 607, 868, 902
TauI GCSGC 3 cut(s) 59, 70, 152
TfiI GAWTC 9 cut(s) 38, 106, 224, 372, 443, 856, 864, 874, 923
Tru1I TTAA 3 cut(s) 218, 606, 636
Tru9I TTAA 3 cut(s) 218, 606, 636
TscAI CASTG 2 cut(s) 284, 344
TseI GCWGC 2 cut(s) 299, 758
TspDTI ATGAA 1 cut(s) 549
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 2 cut(s) 284, 344
VpaK11BI GGWCC 2 cut(s) 260, 398
VspI ATTAAT 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.