Rorug06G0165800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016170
Physical Location & Seq
Forward (+)
23843564 .. 23844348
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0165800.1

Sequence Viewer

Length: 573 bp
ATGGAGCTACAAACCCCGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACCAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCCTGGTAAGGACATCCTTGGCAACATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

190

Amino Acids

20.84

Weight (kDa)

6.51

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 501, 510
AclWI GGATC 5 cut(s) 118, 131, 141, 330, 343
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 4 cut(s) 92, 322, 417, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 7, 199, 535
AluI AGCT 3 cut(s) 7, 199, 535
Alw21I GWGCWC 2 cut(s) 177, 537
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 118, 131, 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 50, 293
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 173, 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 2 cut(s) 164, 306
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 537
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 177, 537
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 4 cut(s) 94, 324, 419, 453
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 2 cut(s) 168, 550
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 5 cut(s) 55, 94, 324, 419, 453
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BmrFI CCNGG 5 cut(s) 55, 94, 324, 419, 453
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 93, 179, 399
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 113, 282, 551
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 306, 466
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 452
Bse1I ACTGG 4 cut(s) 205, 334, 367, 376
BseBI CCWGG 4 cut(s) 94, 324, 419, 453
BseDI CCNNGG 2 cut(s) 306, 466
BseGI GGATG 3 cut(s) 37, 389, 462
BseLI CCNNNNNNNGG 2 cut(s) 329, 452
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 4 cut(s) 205, 334, 367, 376
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 2 cut(s) 164, 306
BseXI GCAGC 2 cut(s) 62, 280
BsiHKAI GWGCWC 2 cut(s) 177, 537
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 329, 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 177, 262, 306, 537
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 3 cut(s) 17, 501, 510
BspCNI CTCAG 1 cut(s) 549
BspLI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BspPI GGATC 5 cut(s) 118, 131, 141, 330, 343
BsrI ACTGG 4 cut(s) 205, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 466
BssMI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BssT1I CCWWGG 2 cut(s) 306, 466
Bst2UI CCWGG 4 cut(s) 94, 324, 419, 453
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 536, 570
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 37, 389, 462
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BstMWI GCNNNNNNNGC 2 cut(s) 507, 566
BstNI CCWGG 4 cut(s) 94, 324, 419, 453
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 5 cut(s) 53, 92, 322, 417, 451
BstSFI CTRYAG 2 cut(s) 168, 550
BstSLI GKGCMC 2 cut(s) 164, 306
BstV1I GCAGC 2 cut(s) 62, 280
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 4 cut(s) 123, 133, 186, 335
BstYI RGATCY 4 cut(s) 123, 133, 186, 335
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 37, 389, 462
BtsIMutI CAGTG 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 327
CviAII CATG 5 cut(s) 215, 307, 448, 475, 565
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 536, 570
DpnI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
DpnII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 306, 466
Eco24I GRGCYC 2 cut(s) 262, 537
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 4 cut(s) 92, 322, 417, 451
EcoT14I CCWWGG 2 cut(s) 306, 466
EcoT38I GRGCYC 2 cut(s) 262, 537
ErhI CCWWGG 2 cut(s) 306, 466
FaeI CATG 5 cut(s) 218, 310, 451, 478, 568
FaiI YATR 7 cut(s) 210, 216, 308, 449, 476, 507, 566
FatI CATG 5 cut(s) 214, 306, 447, 474, 564
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 3 cut(s) 44, 376, 449
FriOI GRGCYC 2 cut(s) 262, 537
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 399
HapII CCGG 1 cut(s) 54
Hin1II CATG 5 cut(s) 218, 310, 451, 478, 568
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 173, 407
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 3 cut(s) 110, 247, 263
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 443
HpyCH4V TGCA 3 cut(s) 285, 397, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 566
HpyF3I CTNAG 2 cut(s) 536, 570
Hsp92II CATG 5 cut(s) 218, 310, 451, 478, 568
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 62, 280
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 315
MalI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
MboI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
MboII GAAGA 2 cut(s) 289, 490
MflI RGATCY 4 cut(s) 123, 133, 186, 335
MhlI GDGCHC 5 cut(s) 164, 177, 262, 306, 537
MluCI AATT 1 cut(s) 349
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 5 cut(s) 55, 94, 324, 419, 453
MvaI CCWGG 4 cut(s) 94, 324, 419, 453
MwoI GCNNNNNNNGC 2 cut(s) 507, 566
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
NlaIII CATG 5 cut(s) 218, 310, 451, 478, 568
NlaIV GGNNCC 5 cut(s) 102, 125, 245, 337, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 316, 432
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 4 cut(s) 92, 322, 417, 451
PspGI CCWGG 4 cut(s) 92, 322, 417, 451
PspN4I GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 4 cut(s) 123, 133, 186, 335
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 5 cut(s) 55, 94, 324, 419, 453
SduI GDGCHC 5 cut(s) 164, 177, 262, 306, 537
SetI ASST 6 cut(s) 9, 98, 201, 284, 499, 537
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 2 cut(s) 168, 550
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 530
SmoI CTYRAG 4 cut(s) 128, 261, 297, 530
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 3 cut(s) 17, 501, 510
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 5 cut(s) 53, 92, 322, 417, 451
StyI CCWWGG 2 cut(s) 306, 466
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 290, 491
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.