Rh6BG278900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016170
Physical Location & Seq
Reverse (-)
50082744 .. 50084222
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG278900.1

Sequence Viewer

Length: 861 bp
ATGGCCACACCACCCTCACCCACCGCCTCGCCCTCCGCCTCCCCGGTCTCCGCCACCGCCACCAAGAAGCCCCACCCGATCCCCTGGACCCACGAAGAAACCGTCCACCTAATCCAGTCCTACCAGGACAAATGGTACGAACTCCGCCGAGGTCAGCTCAAGGCCAGCCAATGGGAGGAGGTCGCCGTCACCGTCGCCGCCCGATGCGGCTACGAATACACCGAGCCCTCCAAGACCGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGTCACCGCTCCGTCAAGAAGCGCCTCGGCCTCAGCTTCGGGTCGGGTTGGCCCTACTTCGATCTCATGGAGCGGCTCGAACAGGGCCCCATGCCCATCTCCGCCAGACGGCCGTACCAGGAGGAGGAGGACGAAGAAGCCGAAGAAGAAGAAGAAGAAGCGGAGGATCATGGCGGCGAAGAAGAAGAGGTTGATGAGGAGGAAGAAGACAACTACAGGAAGTTGCAGAGTCTTGATTACATTCTGAGGAGACCCGCAATTGTGAACAGATTTTCTTCCGGAGCAAAAGAGGGCCACTTTCGGGACTCGGCGGCGGCGAAAAGGCCGAGGGAGGCCGCCGCAGACGACGACGGCTACTACGGCGATGTGGTGGATGGGCAGAGAGGAACAGAGATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTTGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

286

Amino Acids

32.97

Weight (kDa)

5.11

Isoelectric Point (pI)

69.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 29 - 118 1.3e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 171, 259
AccBSI CCGCTC 2 cut(s) 285, 349
AccIII TCCGGA 1 cut(s) 554
AclWI GGATC 2 cut(s) 73, 450
AcoI YGGCCR 2 cut(s) 3, 386
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 2 cut(s) 137, 392
AfiI CCNNNNNNNGG 7 cut(s) 171, 175, 259, 384, 400, 577, 840
AgsI TTSAA 1 cut(s) 809
AjnI CCWGG 3 cut(s) 83, 123, 393
AluBI AGCT 4 cut(s) 157, 268, 312, 682
AluI AGCT 4 cut(s) 157, 268, 312, 682
Alw26I GTCTC 2 cut(s) 52, 520
AlwI GGATC 2 cut(s) 73, 450
Aor13HI TCCGGA 1 cut(s) 554
AoxI GGCC 9 cut(s) 3, 162, 304, 326, 361, 386, 568, 599, 609
ApaI GGGCCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 814
ArsI GACNNNNNNTTYG 3 cut(s) 87, 119, 830
AspLEI GCGC 2 cut(s) 300, 819
AspS9I GGNCC 5 cut(s) 87, 327, 361, 362, 568
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 9, 181, 272
AvaII GGWCC 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 374, 407
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 228, 365
BbsI GAAGAC 1 cut(s) 489
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 826
BccI CCATC 7 cut(s) 253, 380, 644, 664, 733, 772, 842
BceAI ACGGC 5 cut(s) 170, 373, 401, 643, 652
BciT130I CCWGG 3 cut(s) 85, 125, 395
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 52, 520
BfmI CTRYAG 1 cut(s) 490
BfoI RGCGCY 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 44, 85, 125, 395
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 5 cut(s) 87, 327, 361, 362, 568
BmiI GGNNCC 3 cut(s) 89, 363, 364
BmrFI CCNGG 4 cut(s) 44, 85, 125, 395
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 743
BsaI GGTCTC 2 cut(s) 52, 520
BsaJI CCNNGG 5 cut(s) 42, 83, 148, 301, 602
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 7 cut(s) 171, 175, 259, 384, 400, 577, 840
Bse1I ACTGG 2 cut(s) 115, 244
Bse8I GATNNNNATC 1 cut(s) 743
BseAI TCCGGA 1 cut(s) 554
BseBI CCWGG 3 cut(s) 85, 125, 395
BseDI CCNNGG 5 cut(s) 42, 83, 148, 301, 602
BseGI GGATG 2 cut(s) 655, 744
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 7 cut(s) 171, 175, 259, 384, 400, 577, 840
BseMII CTCAG 2 cut(s) 322, 512
BseNI ACTGG 2 cut(s) 115, 244
BseRI GAGGAG 5 cut(s) 191, 413, 416, 488, 538
BseSI GKGCMC 1 cut(s) 365
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 826
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 570, 601, 611
BsiEI CGRYCG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 44, 555
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 7 cut(s) 171, 175, 259, 384, 400, 577, 840
BsmAI GTCTC 2 cut(s) 52, 520
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 570, 601, 611
Bso31I GGTCTC 2 cut(s) 52, 520
Bsp120I GGGCCC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 228, 365
Bsp13I TCCGGA 1 cut(s) 554
Bsp143I GATC 4 cut(s) 78, 337, 442, 744
BspANI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 570, 601, 611
BspCNI CTCAG 2 cut(s) 321, 513
BspEI TCCGGA 1 cut(s) 554
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 89, 363, 364
BspPI GGATC 2 cut(s) 73, 450
BspTNI GGTCTC 2 cut(s) 52, 520
BsrBI CCGCTC 2 cut(s) 285, 349
BsrI ACTGG 2 cut(s) 115, 244
BssECI CCNNGG 5 cut(s) 42, 83, 148, 301, 602
BssMI GATC 4 cut(s) 78, 337, 442, 744
Bst2UI CCWGG 3 cut(s) 85, 125, 395
Bst4CI ACNGT 2 cut(s) 103, 193
Bst6I CTCTTC 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 166, 275, 684
BstDEI CTNAG 2 cut(s) 308, 521
BstF5I GGATG 2 cut(s) 655, 744
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 819
BstKTI GATC 4 cut(s) 81, 340, 445, 747
BstMAI GTCTC 2 cut(s) 52, 520
BstMBI GATC 4 cut(s) 78, 337, 442, 744
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 274, 636
BstNI CCWGG 3 cut(s) 85, 125, 395
BstSCI CCNGG 4 cut(s) 42, 83, 123, 393
BstSFI CTRYAG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 489
BstZI CGGCCG 1 cut(s) 386
BsuRI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 570, 601, 611
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 655, 744
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 166, 275, 684
CciI TCATGA 1 cut(s) 747
CfoI GCGC 2 cut(s) 300, 819
Cfr13I GGNCC 5 cut(s) 87, 327, 361, 362, 568
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 136, 391
CviAII CATG 4 cut(s) 343, 367, 446, 748
CviQI GTAC 2 cut(s) 136, 391
DdeI CTNAG 2 cut(s) 308, 521
DpnI GATC 4 cut(s) 80, 339, 444, 746
DpnII GATC 4 cut(s) 78, 337, 442, 744
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 3, 386
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 5 cut(s) 25, 40, 134, 260, 367
EclXI CGGCCG 1 cut(s) 386
Eco24I GRGCYC 2 cut(s) 228, 365
Eco31I GGTCTC 2 cut(s) 52, 520
Eco47I GGWCC 1 cut(s) 87
Eco52I CGGCCG 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 361, 362
EcoRII CCWGG 3 cut(s) 83, 123, 393
EcoT38I GRGCYC 2 cut(s) 228, 365
FaeI CATG 4 cut(s) 346, 370, 449, 751
FaiI YATR 6 cut(s) 344, 368, 447, 734, 749, 800
FaqI GGGAC 1 cut(s) 593
FatI CATG 4 cut(s) 342, 366, 445, 747
FauI CCCGC 1 cut(s) 538
FokI GGATG 2 cut(s) 662, 751
FriOI GRGCYC 2 cut(s) 228, 365
GlaI GCGC 2 cut(s) 299, 818
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 570, 601, 611
HapII CCGG 2 cut(s) 44, 555
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 300, 819
Hin1II CATG 4 cut(s) 346, 370, 449, 751
Hin6I GCGC 2 cut(s) 298, 817
HinP1I GCGC 2 cut(s) 298, 817
HinfI GANTC 4 cut(s) 505, 581, 802, 830
HpaII CCGG 2 cut(s) 44, 555
HphI GGTGA 3 cut(s) 9, 181, 272
Hpy166II GTNNAC 2 cut(s) 106, 541
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 5 cut(s) 292, 509, 555, 578, 748
Hpy8I GTNNAC 2 cut(s) 106, 541
Hpy99I CGWCG 4 cut(s) 197, 626, 629, 691
HpyCH4III ACNGT 2 cut(s) 103, 193
HpyCH4V TGCA 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 636
HpyF3I CTNAG 2 cut(s) 308, 521
Hsp92II CATG 4 cut(s) 346, 370, 449, 751
HspAI GCGC 2 cut(s) 298, 817
Kpn2I TCCGGA 1 cut(s) 554
Kzo9I GATC 4 cut(s) 78, 337, 442, 744
LmnI GCTCC 5 cut(s) 273, 290, 346, 557, 679
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 187, 278
MalI GATC 4 cut(s) 80, 339, 444, 746
MbiI CCGCTC 2 cut(s) 285, 349
MboI GATC 4 cut(s) 78, 337, 442, 744
MfeI CAATTG 1 cut(s) 534
MhlI GDGCHC 2 cut(s) 228, 365
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 534, 822
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 514, 575
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 554
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 44, 555
MspR9I CCNGG 4 cut(s) 44, 85, 125, 395
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 3 cut(s) 85, 125, 395
MwoI GCNNNNNNNGC 2 cut(s) 274, 636
NciI CCSGG 1 cut(s) 44
NdeII GATC 4 cut(s) 78, 337, 442, 744
NlaIII CATG 4 cut(s) 346, 370, 449, 751
NlaIV GGNNCC 3 cut(s) 89, 363, 364
NmeAIII GCCGAG 4 cut(s) 173, 282, 563, 627
NmuCI GTSAC 2 cut(s) 187, 278
PagI TCATGA 1 cut(s) 747
PcsI WCGNNNNNNNCGW 5 cut(s) 99, 189, 219, 414, 590
PfeI GAWTC 2 cut(s) 802, 830
PflMI CCANNNNNTGG 2 cut(s) 171, 259
PleI GAGTC 2 cut(s) 513, 575
PpsI GAGTC 2 cut(s) 513, 575
Psp6I CCWGG 3 cut(s) 83, 123, 393
PspGI CCWGG 3 cut(s) 83, 123, 393
PspN4I GGNNCC 3 cut(s) 89, 363, 364
PspOMI GGGCCC 1 cut(s) 361
PspPI GGNCC 5 cut(s) 87, 327, 361, 362, 568
RsaI GTAC 2 cut(s) 137, 392
RsaNI GTAC 2 cut(s) 136, 391
Sau3AI GATC 4 cut(s) 78, 337, 442, 744
Sau96I GGNCC 5 cut(s) 87, 327, 361, 362, 568
SchI GAGTC 2 cut(s) 514, 575
ScrFI CCNGG 4 cut(s) 44, 85, 125, 395
SduI GDGCHC 2 cut(s) 228, 365
SetI ASST 9 cut(s) 111, 154, 159, 183, 270, 314, 468, 684, 767
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 534, 822
StyD4I CCNGG 4 cut(s) 42, 83, 123, 393
TaaI ACNGT 2 cut(s) 103, 193
TaqI TCGA 3 cut(s) 336, 354, 837
TasI AATT 2 cut(s) 534, 822
TauI GCSGC 9 cut(s) 200, 210, 252, 352, 453, 590, 593, 614, 617
TfiI GAWTC 2 cut(s) 802, 830
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 187, 278
TseI GCWGC 1 cut(s) 814
Tsp45I GTSAC 2 cut(s) 187, 278
TspGWI ACGGA 4 cut(s) 277, 704, 773, 805
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 2 cut(s) 171, 259
VpaK11BI GGWCC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.