Rmu_sc0007474.1_g000020
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007474.1
OG0016170
Physical Location & Seq
Reverse (-)
65941 .. 66909
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007474.1_g000020.1.cds

Sequence Viewer

Length: 969 bp
atggccacaccaccctcacccaccgcctcgccctccgcctccccagtctccaccaccgccaccaagaagccccacccgatcccctggacccaccaagaaaccgtccacctaatccagtcctaccaggacaaatggtacgaactccgccgaggtcagctcaaggccagccaatgggaggaggtcgccgtcaccgtcgccgcccgatgcggctacgactacaccgagccctccaagaccgccacccagtgccgccacaagatggagaagctccgccagcgtcaccgctccgtcaagaagcgcctcggcctcagcttcgggtcgggttggccctacttcgatctcatggagcggctcgaacagggccccatgcccatctccgccagacggccgtaccaggaggaggaggaggacgacgaagaagccgaagaagaagaaccctacttcgatctcatggagcggctcgaacagggccccatgcccatctccgccagacggccgtaccaggaggaggaggaggaggacgaagaagccgaagaagaagaagaagcggaggatcatggcggcgaagaagaagaggttgatgaggaggaagaagacaactacaggaagttgcagagtcttgattacattctgaggagacccgcaattgtgaacagattttcttccggagcaaaagagggccactttcgggactcggcggcggcgaaaaggccgagggaggcggccgcagacgacgacggctactacggcgatgtggtggatgggcagagaggaacagagatggtggtggagctggcgacggagataagggggtttgcgaaaaggctgattggggtggagaatatgaggatggagatcatgagggaaacggagaggtgtagattagagatggagaataaacggattgatatgattcttcaatcgcagcgcaaaattgttgattccatcgacagggcttttgggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

322

Amino Acids

37.37

Weight (kDa)

4.79

Isoelectric Point (pI)

78.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 171, 259
AccBSI CCGCTC 3 cut(s) 285, 349, 457
AccIII TCCGGA 1 cut(s) 665
AclWI GGATC 2 cut(s) 73, 561
AcoI YGGCCR 4 cut(s) 3, 386, 494, 723
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 3 cut(s) 137, 392, 500
AfiI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
AgsI TTSAA 1 cut(s) 920
AjnI CCWGG 4 cut(s) 83, 123, 393, 501
AluBI AGCT 4 cut(s) 157, 268, 312, 793
AluI AGCT 4 cut(s) 157, 268, 312, 793
Alw26I GTCTC 2 cut(s) 52, 631
AlwI GGATC 2 cut(s) 73, 561
Aor13HI TCCGGA 1 cut(s) 665
ApaI GGGCCC 2 cut(s) 365, 473
ApeKI GCWGC 1 cut(s) 925
ArsI GACNNNNNNTTYG 1 cut(s) 941
AspLEI GCGC 2 cut(s) 300, 930
AspS9I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
AsuHPI GGTGA 3 cut(s) 9, 181, 272
AvaII GGWCC 1 cut(s) 87
BaeGI GKGCMC 2 cut(s) 365, 473
BaeI ACNNNNGTAYC 4 cut(s) 374, 407, 482, 515
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 228, 365, 473
BbsI GAAGAC 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 937
BccI CCATC 8 cut(s) 253, 380, 488, 755, 775, 844, 883, 953
BceAI ACGGC 7 cut(s) 170, 373, 401, 481, 509, 754, 763
BciT130I CCWGG 4 cut(s) 85, 125, 395, 503
BcoDI GTCTC 2 cut(s) 52, 631
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 85, 125, 395, 503
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
BmiI GGNNCC 5 cut(s) 89, 363, 364, 471, 472
BmrFI CCNGG 4 cut(s) 85, 125, 395, 503
BmrI ACTGGG 2 cut(s) 38, 238
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 2 cut(s) 38, 238
BpiI GAAGAC 1 cut(s) 600
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 854
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 4 cut(s) 83, 148, 301, 713
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
Bse1I ACTGG 3 cut(s) 44, 115, 244
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 4 cut(s) 85, 125, 395, 503
BseDI CCNNGG 4 cut(s) 83, 148, 301, 713
BseGI GGATG 2 cut(s) 766, 855
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
BseMII CTCAG 2 cut(s) 322, 623
BseNI ACTGG 3 cut(s) 44, 115, 244
BseSI GKGCMC 2 cut(s) 365, 473
BseX3I CGGCCG 3 cut(s) 386, 494, 723
BseXI GCAGC 1 cut(s) 937
Bsh1285I CGRYCG 3 cut(s) 389, 497, 726
BsiEI CGRYCG 3 cut(s) 389, 497, 726
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
BsmAI GTCTC 2 cut(s) 52, 631
BsmFI GGGAC 1 cut(s) 704
Bso31I GGTCTC 1 cut(s) 631
Bsp120I GGGCCC 2 cut(s) 361, 469
Bsp1286I GDGCHC 3 cut(s) 228, 365, 473
Bsp13I TCCGGA 1 cut(s) 665
Bsp143I GATC 5 cut(s) 78, 337, 445, 553, 855
BspCNI CTCAG 2 cut(s) 321, 624
BspEI TCCGGA 1 cut(s) 665
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 5 cut(s) 89, 363, 364, 471, 472
BspPI GGATC 2 cut(s) 73, 561
BspTNI GGTCTC 1 cut(s) 631
BsrBI CCGCTC 3 cut(s) 285, 349, 457
BsrI ACTGG 3 cut(s) 44, 115, 244
BssECI CCNNGG 4 cut(s) 83, 148, 301, 713
BssMI GATC 5 cut(s) 78, 337, 445, 553, 855
Bst2UI CCWGG 4 cut(s) 85, 125, 395, 503
Bst4CI ACNGT 2 cut(s) 103, 193
Bst6I CTCTTC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 166, 275, 795
BstDEI CTNAG 2 cut(s) 308, 632
BstF5I GGATG 2 cut(s) 766, 855
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 930
BstKTI GATC 5 cut(s) 81, 340, 448, 556, 858
BstMAI GTCTC 2 cut(s) 52, 631
BstMBI GATC 5 cut(s) 78, 337, 445, 553, 855
BstMCI CGRYCG 3 cut(s) 389, 497, 726
BstMWI GCNNNNNNNGC 2 cut(s) 274, 747
BstNI CCWGG 4 cut(s) 85, 125, 395, 503
BstSCI CCNGG 4 cut(s) 83, 123, 393, 501
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 2 cut(s) 365, 473
BstV1I GCAGC 1 cut(s) 937
BstV2I GAAGAC 1 cut(s) 600
BstZI CGGCCG 3 cut(s) 386, 494, 723
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 2 cut(s) 766, 855
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 166, 275, 795
CciI TCATGA 1 cut(s) 858
CciNI GCGGCCGC 1 cut(s) 723
CfoI GCGC 2 cut(s) 300, 930
Cfr13I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
CseI GACGC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 136, 391, 499
CviAII CATG 6 cut(s) 343, 367, 451, 475, 557, 859
CviQI GTAC 3 cut(s) 136, 391, 499
DdeI CTNAG 2 cut(s) 308, 632
DpnI GATC 5 cut(s) 80, 339, 447, 555, 857
DpnII GATC 5 cut(s) 78, 337, 445, 553, 855
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 4 cut(s) 3, 386, 494, 723
EagI CGGCCG 3 cut(s) 386, 494, 723
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 5 cut(s) 25, 134, 260, 367, 475
EclXI CGGCCG 3 cut(s) 386, 494, 723
Eco24I GRGCYC 3 cut(s) 228, 365, 473
Eco31I GGTCTC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 87
Eco52I CGGCCG 3 cut(s) 386, 494, 723
EcoO109I RGGNCCY 4 cut(s) 361, 362, 469, 470
EcoRII CCWGG 4 cut(s) 83, 123, 393, 501
EcoT38I GRGCYC 3 cut(s) 228, 365, 473
FaeI CATG 6 cut(s) 346, 370, 454, 478, 560, 862
FaiI YATR 8 cut(s) 344, 368, 452, 476, 558, 845, 860, 911
FaqI GGGAC 1 cut(s) 704
FatI CATG 6 cut(s) 342, 366, 450, 474, 556, 858
FauI CCCGC 1 cut(s) 649
FokI GGATG 2 cut(s) 773, 862
FriOI GRGCYC 3 cut(s) 228, 365, 473
GlaI GCGC 2 cut(s) 299, 929
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 1 cut(s) 666
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 300, 930
Hin1II CATG 6 cut(s) 346, 370, 454, 478, 560, 862
Hin6I GCGC 2 cut(s) 298, 928
HinP1I GCGC 2 cut(s) 298, 928
HinfI GANTC 4 cut(s) 616, 692, 913, 941
HpaII CCGG 1 cut(s) 666
HphI GGTGA 3 cut(s) 9, 181, 272
Hpy166II GTNNAC 2 cut(s) 106, 652
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 5 cut(s) 292, 620, 666, 689, 859
Hpy8I GTNNAC 2 cut(s) 106, 652
Hpy99I CGWCG 5 cut(s) 197, 416, 737, 740, 802
HpyCH4III ACNGT 2 cut(s) 103, 193
HpyCH4V TGCA 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 747
HpyF3I CTNAG 2 cut(s) 308, 632
Hsp92II CATG 6 cut(s) 346, 370, 454, 478, 560, 862
HspAI GCGC 2 cut(s) 298, 928
Kpn2I TCCGGA 1 cut(s) 665
Kzo9I GATC 5 cut(s) 78, 337, 445, 553, 855
LmnI GCTCC 6 cut(s) 273, 290, 346, 454, 668, 790
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 187, 278
MalI GATC 5 cut(s) 80, 339, 447, 555, 857
MbiI CCGCTC 3 cut(s) 285, 349, 457
MboI GATC 5 cut(s) 78, 337, 445, 553, 855
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 228, 365, 473
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 645, 933
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 625, 686
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 4 cut(s) 85, 125, 395, 503
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 4 cut(s) 85, 125, 395, 503
MwoI GCNNNNNNNGC 2 cut(s) 274, 747
NdeII GATC 5 cut(s) 78, 337, 445, 553, 855
NlaIII CATG 6 cut(s) 346, 370, 454, 478, 560, 862
NlaIV GGNNCC 5 cut(s) 89, 363, 364, 471, 472
NmeAIII GCCGAG 4 cut(s) 173, 282, 674, 738
NmuCI GTSAC 2 cut(s) 187, 278
NotI GCGGCCGC 1 cut(s) 723
PagI TCATGA 1 cut(s) 858
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 219, 420, 528, 701
PfeI GAWTC 2 cut(s) 913, 941
PflMI CCANNNNNTGG 2 cut(s) 171, 259
PleI GAGTC 2 cut(s) 624, 686
PpsI GAGTC 2 cut(s) 624, 686
Psp6I CCWGG 4 cut(s) 83, 123, 393, 501
PspGI CCWGG 4 cut(s) 83, 123, 393, 501
PspN4I GGNNCC 5 cut(s) 89, 363, 364, 471, 472
PspOMI GGGCCC 2 cut(s) 361, 469
PspPI GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
RsaI GTAC 3 cut(s) 137, 392, 500
RsaNI GTAC 3 cut(s) 136, 391, 499
Sau3AI GATC 5 cut(s) 78, 337, 445, 553, 855
Sau96I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
SchI GAGTC 2 cut(s) 625, 686
ScrFI CCNGG 4 cut(s) 85, 125, 395, 503
SduI GDGCHC 3 cut(s) 228, 365, 473
SetI ASST 9 cut(s) 111, 154, 159, 183, 270, 314, 579, 795, 878
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 645, 933
StyD4I CCNGG 4 cut(s) 83, 123, 393, 501
TaaI ACNGT 2 cut(s) 103, 193
TaqI TCGA 5 cut(s) 336, 354, 444, 462, 948
TasI AATT 2 cut(s) 645, 933
TfiI GAWTC 2 cut(s) 913, 941
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 187, 278
TseI GCWGC 1 cut(s) 925
Tsp45I GTSAC 2 cut(s) 187, 278
TspGWI ACGGA 4 cut(s) 277, 815, 884, 916
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 2 cut(s) 171, 259
VpaK11BI GGWCC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.