Rh6AG278800
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
47363135 .. 47363326
192 bp
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UTR
Exon/CDS
Intron
Rh6AG278800.1

Sequence Viewer

Length: 192 bp
ATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTTGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.49

Weight (kDa)

6.27

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 145
ArsI GACNNNNNNTTYG 1 cut(s) 161
AspLEI GCGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 157
BccI CCATC 3 cut(s) 64, 103, 173
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 74
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 171
Bsp143I GATC 1 cut(s) 75
BspHI TCATGA 1 cut(s) 78
BssMI GATC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 15
BstF5I GGATG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 78
CfoI GCGC 1 cut(s) 150
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 13, 46, 176, 184
CviKI_1 RGCY 4 cut(s) 13, 46, 176, 184
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 65, 80, 131
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 2 cut(s) 133, 161
Hpy188III TCNNGA 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 22
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 157
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 1 cut(s) 128
MluCI AATT 1 cut(s) 153
MnlI CCTC 3 cut(s) 60, 75, 87
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 82
PagI TCATGA 1 cut(s) 78
PfeI GAWTC 2 cut(s) 133, 161
PkrI GCNGC 1 cut(s) 147
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 75
SetI ASST 2 cut(s) 15, 98
SgeI CNNG 3 cut(s) 26, 91, 184
Sse9I AATT 1 cut(s) 153
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 153
TfiI GAWTC 2 cut(s) 133, 161
TseI GCWGC 1 cut(s) 145
TspGWI ACGGA 3 cut(s) 35, 104, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.