pycom05g16130
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016170
Physical Location & Seq
Reverse (-)
19491965 .. 19492840
876 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16130.1

Sequence Viewer

Length: 876 bp
ATGTCCACACCACTACCGCCGTCGCCCACGGCCTCCCCCATGGCCTCAGTCTCCGCCTCGCCCACAGCCACGGCTAAGAAGCCCCAGCCACTGCCGTGGACCCAAGAGGAGACGGTGCAGCTGATCCGGGCCTACCAGGAGAAGTGGTACGCGCTGAGGAGGGGCCAGCTGAAGTCGAGCCAGTGGGAGGAGGTGGCGGTGACCGTGGCGGCCCGGTGCGGTTACGAATACGGCGAGCCGTCGAAATCCGCCACGCAGTGCCGCCACAAGATGGAGAAGCTCCGGCAGCGACACCGCGCCGTGAAGAAGCGCCTCGGCCAGAGAACCAAGTCCGGCTGGCCCTTCTTCGAGCTCATGGAGCAGATGGAGCGCGGGCCCATGCCCATCTCTGTTATGCCCATGGCGGAGATGCCACATCAGCAAGAAGAAGAAGAGCGTGATTATCACGATCGTAATTATCACGGCGGCAATGAAGACGACGATGAGGAGAATTCCAACAAGGTCCGGAGCATCGACTTCATCCTGCGGAGGCCGACGTTTGTGAACAGATTTTCCGGGAAAGCCTCGTTTTTGCAGGGACCCGCTGCGGCAGCGGAGTTAAAGAGAGGGAGAGAGGCGGTGGGCGAGGGCGACGTGGCGGAGCCGCCGCAGCATAGGGGTAGGGAAATGGTGGTGGAATTGGCGGACGAGATGAGGGCATTCGCCCAGCAGTTAATCGGGGTGGAGAACATGAGGATGAAGATGATGAAGGAAACGGAGAGGTATAGAGTGGAGATGGAGAAGAGGAGGATGAGCATGATCCTGCAGTCACAGCAGAAGATTGTTCACTCCATCAATACCGCTTTCGGGTCTTCCAACAAGCTGAGCACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

292

Amino Acids

33.37

Weight (kDa)

9.24

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 33 - 122 6.4e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 3 cut(s) 152, 297, 372
AccIII TCCGGA 1 cut(s) 504
AclWI GGATC 2 cut(s) 118, 793
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 187, 271, 846
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 94
AloI GAACNNNNNNTCC 2 cut(s) 536, 568
AluBI AGCT 6 cut(s) 121, 169, 280, 352, 862, 873
AluI AGCT 6 cut(s) 121, 169, 280, 352, 862, 873
Alw21I GWGCWC 2 cut(s) 354, 869
Alw26I GTCTC 2 cut(s) 55, 104
AlwI GGATC 2 cut(s) 118, 793
AlwNI CAGNNNCTG 1 cut(s) 91
Aor13HI TCCGGA 1 cut(s) 504
AoxI GGCC 9 cut(s) 30, 42, 129, 163, 210, 316, 338, 374, 530
ApaI GGGCCC 1 cut(s) 378
ApeKI GCWGC 5 cut(s) 118, 286, 584, 590, 649
ApoI RAATTY 1 cut(s) 490
AspLEI GCGC 4 cut(s) 154, 299, 312, 372
AspS9I GGNCC 9 cut(s) 99, 129, 163, 211, 339, 374, 375, 502, 578
AsuC2I CCSGG 3 cut(s) 128, 214, 556
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 3 cut(s) 99, 502, 578
BaeGI GKGCMC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 354, 378
BbsI GAAGAC 2 cut(s) 480, 843
Bbv12I GWGCWC 2 cut(s) 354, 869
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 5 cut(s) 130, 298, 571, 602, 661
BccI CCATC 5 cut(s) 265, 358, 392, 769, 839
BceAI ACGGC 8 cut(s) 4, 45, 79, 87, 223, 247, 284, 478
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 3 cut(s) 128, 214, 556
BcoDI GTCTC 2 cut(s) 55, 104
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 313
BlpI GCTNAGC 1 cut(s) 863
Bme1390I CCNGG 4 cut(s) 128, 137, 214, 556
Bme18I GGWCC 3 cut(s) 99, 502, 578
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 9 cut(s) 99, 129, 163, 211, 339, 374, 375, 502, 578
BmiI GGNNCC 6 cut(s) 101, 164, 376, 579, 580, 642
BmrFI CCNGG 4 cut(s) 128, 137, 214, 556
BmsI GCATC 2 cut(s) 399, 519
BpiI GAAGAC 2 cut(s) 480, 843
Bpu10I CCTNAGC 1 cut(s) 155
Bpu1102I GCTNAGC 1 cut(s) 863
BpuMI CCSGG 3 cut(s) 128, 214, 556
BsaJI CCNNGG 7 cut(s) 27, 39, 69, 95, 204, 313, 399
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 271, 846
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 475
BseAI TCCGGA 1 cut(s) 504
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 7 cut(s) 27, 39, 69, 95, 204, 313, 399
BseGI GGATG 3 cut(s) 519, 741, 795
BseLI CCNNNNNNNGG 3 cut(s) 187, 271, 846
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 60, 146, 854
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 5 cut(s) 122, 172, 203, 500, 799
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 5 cut(s) 130, 298, 571, 602, 661
BseYI CCCAGC 2 cut(s) 84, 705
BsgI GTGCAG 1 cut(s) 137
Bsh1236I CGCG 3 cut(s) 152, 297, 372
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 9 cut(s) 32, 44, 131, 165, 212, 318, 340, 376, 532
BsiEI CGRYCG 1 cut(s) 451
BsiHKAI GWGCWC 2 cut(s) 354, 869
BsiSI CCGG 6 cut(s) 127, 214, 283, 333, 505, 555
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 3 cut(s) 187, 271, 846
BsmAI GTCTC 2 cut(s) 55, 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 9 cut(s) 32, 44, 131, 165, 212, 318, 340, 376, 532
Bsp120I GGGCCC 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 354, 378, 869
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 3 cut(s) 123, 448, 798
Bsp1720I GCTNAGC 1 cut(s) 863
Bsp19I CCATGG 2 cut(s) 39, 399
BspANI GGCC 9 cut(s) 32, 44, 131, 165, 212, 318, 340, 376, 532
BspCNI CTCAG 3 cut(s) 59, 147, 855
BspEI TCCGGA 1 cut(s) 504
BspFNI CGCG 3 cut(s) 152, 297, 372
BspLI GGNNCC 6 cut(s) 101, 164, 376, 579, 580, 642
BspMAI CTGCAG 1 cut(s) 807
BspPI GGATC 2 cut(s) 118, 793
BspQI GCTCTTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 7 cut(s) 27, 39, 69, 95, 204, 313, 399
BssMI GATC 3 cut(s) 123, 448, 798
BssT1I CCWWGG 2 cut(s) 39, 399
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 115, 205
Bst6I CTCTTC 2 cut(s) 426, 776
BstC8I GCNNGC 4 cut(s) 167, 236, 338, 374
BstDEI CTNAG 4 cut(s) 46, 75, 155, 863
BstDSI CCRYGG 6 cut(s) 27, 39, 69, 95, 204, 399
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 3 cut(s) 519, 741, 795
BstFNI CGCG 3 cut(s) 152, 297, 372
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 4 cut(s) 154, 299, 312, 372
BstKTI GATC 3 cut(s) 126, 451, 801
BstMAI GTCTC 2 cut(s) 55, 104
BstMBI GATC 3 cut(s) 123, 448, 798
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 7 cut(s) 286, 358, 367, 418, 590, 649, 811
BstNI CCWGG 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 126, 135, 212, 554
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 3 cut(s) 152, 297, 372
BstV1I GCAGC 5 cut(s) 130, 298, 571, 602, 661
BstV2I GAAGAC 2 cut(s) 480, 843
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 9 cut(s) 32, 44, 131, 165, 212, 318, 340, 376, 532
BtgI CCRYGG 6 cut(s) 27, 39, 69, 95, 204, 399
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 3 cut(s) 519, 741, 795
BtsI GCAGTG 2 cut(s) 89, 263
BtsIMutI CAGTG 3 cut(s) 89, 188, 263
Cac8I GCNNGC 4 cut(s) 167, 236, 338, 374
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 4 cut(s) 154, 299, 312, 372
Cfr13I GGNCC 9 cut(s) 99, 129, 163, 211, 339, 374, 375, 502, 578
Csp6I GTAC 1 cut(s) 148
CviAII CATG 6 cut(s) 40, 355, 379, 400, 730, 796
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 46, 75, 155, 863
DpnI GATC 3 cut(s) 125, 450, 800
DpnII GATC 3 cut(s) 123, 448, 798
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 426, 776
EarI CTCTTC 2 cut(s) 426, 776
EciI GGCGGA 5 cut(s) 43, 238, 419, 653, 698
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 39, 399
Eco24I GRGCYC 2 cut(s) 354, 378
Eco47I GGWCC 3 cut(s) 99, 502, 578
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 39, 399
EcoT38I GRGCYC 2 cut(s) 354, 378
ErhI CCWWGG 2 cut(s) 39, 399
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 6 cut(s) 43, 358, 382, 403, 733, 799
FaiI YATR 9 cut(s) 41, 356, 380, 395, 401, 654, 731, 765, 797
FaqI GGGAC 1 cut(s) 591
FatI CATG 6 cut(s) 39, 354, 378, 399, 729, 795
FauI CCCGC 2 cut(s) 365, 589
FokI GGATG 3 cut(s) 506, 748, 802
FriOI GRGCYC 2 cut(s) 354, 378
GlaI GCGC 4 cut(s) 153, 298, 311, 371
GsaI CCCAGC 2 cut(s) 88, 709
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 9 cut(s) 32, 44, 131, 165, 212, 318, 340, 376, 532
HapII CCGG 6 cut(s) 127, 214, 283, 333, 505, 555
HhaI GCGC 4 cut(s) 154, 299, 312, 372
Hin1II CATG 6 cut(s) 43, 358, 382, 403, 733, 799
Hin6I GCGC 4 cut(s) 152, 297, 310, 370
HinP1I GCGC 4 cut(s) 152, 297, 310, 370
HpaII CCGG 6 cut(s) 127, 214, 283, 333, 505, 555
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 4 cut(s) 6, 99, 544, 826
Hpy188III TCNNGA 2 cut(s) 446, 505
Hpy8I GTNNAC 4 cut(s) 6, 99, 544, 826
Hpy99I CGWCG 5 cut(s) 25, 244, 482, 538, 635
HpyAV CCTTC 2 cut(s) 352, 742
HpyCH4III ACNGT 2 cut(s) 115, 205
HpyCH4IV ACGT 2 cut(s) 536, 633
HpyCH4V TGCA 3 cut(s) 118, 574, 805
HpyF10VI GCNNNNNNNGC 7 cut(s) 286, 358, 367, 418, 590, 649, 811
HpyF3I CTNAG 4 cut(s) 46, 75, 155, 863
HpySE526I ACGT 2 cut(s) 536, 633
Hsp92II CATG 6 cut(s) 43, 358, 382, 403, 733, 799
HspAI GCGC 4 cut(s) 152, 297, 310, 370
KflI GGGWCCC 1 cut(s) 578
Kpn2I TCCGGA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 123, 448, 798
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 5 cut(s) 285, 358, 367, 507, 640
Lsp1109I GCAGC 5 cut(s) 130, 298, 571, 602, 661
LweI GCATC 2 cut(s) 399, 519
MaeII ACGT 2 cut(s) 536, 633
MaeIII GTNAC 3 cut(s) 199, 221, 807
MalI GATC 3 cut(s) 125, 450, 800
MboI GATC 3 cut(s) 123, 448, 798
MhlI GDGCHC 3 cut(s) 354, 378, 869
MluCI AATT 3 cut(s) 454, 490, 677
MmeI TCCRAC 1 cut(s) 519
MroI TCCGGA 1 cut(s) 504
MseI TTAA 2 cut(s) 599, 713
MslI CAYNNNNRTG 2 cut(s) 94, 734
MspA1I CMGCKG 5 cut(s) 121, 169, 584, 593, 873
MspI CCGG 6 cut(s) 127, 214, 283, 333, 505, 555
MspR9I CCNGG 4 cut(s) 128, 137, 214, 556
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 3 cut(s) 152, 297, 372
MwoI GCNNNNNNNGC 7 cut(s) 286, 358, 367, 418, 590, 649, 811
NciI CCSGG 3 cut(s) 128, 214, 556
NcoI CCATGG 2 cut(s) 39, 399
NdeII GATC 3 cut(s) 123, 448, 798
NlaIII CATG 6 cut(s) 43, 358, 382, 403, 733, 799
NlaIV GGNNCC 6 cut(s) 101, 164, 376, 579, 580, 642
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 199, 807
OliI CACNNNNGTG 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 698
PflMI CCANNNNNTGG 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 554
Ple19I CGATCG 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 199
PspFI CCCAGC 2 cut(s) 84, 705
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 6 cut(s) 101, 164, 376, 579, 580, 642
PspOMI GGGCCC 1 cut(s) 374
PspPI GGNCC 9 cut(s) 99, 129, 163, 211, 339, 374, 375, 502, 578
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 91
PvuI CGATCG 1 cut(s) 451
PvuII CAGCTG 3 cut(s) 121, 169, 873
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 94, 734
SacI GAGCTC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 599, 713
Sau3AI GATC 3 cut(s) 123, 448, 798
Sau96I GGNCC 9 cut(s) 99, 129, 163, 211, 339, 374, 375, 502, 578
ScrFI CCNGG 4 cut(s) 128, 137, 214, 556
SduI GDGCHC 3 cut(s) 354, 378, 869
SfaNI GCATC 2 cut(s) 399, 519
SfcI CTRYAG 1 cut(s) 803
SinI GGWCC 3 cut(s) 99, 502, 578
SmiMI CAYNNNNRTG 2 cut(s) 94, 734
Sse9I AATT 3 cut(s) 454, 490, 677
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 4 cut(s) 126, 135, 212, 554
StyI CCWWGG 2 cut(s) 39, 399
TaaI ACNGT 2 cut(s) 115, 205
TaiI ACGT 2 cut(s) 539, 636
TaqI TCGA 4 cut(s) 176, 242, 348, 513
TasI AATT 3 cut(s) 454, 490, 677
TauI GCSGC 6 cut(s) 212, 264, 468, 590, 646, 649
Tru1I TTAA 2 cut(s) 599, 713
Tru9I TTAA 2 cut(s) 599, 713
TscAI CASTG 3 cut(s) 96, 188, 263
TseFI GTSAC 2 cut(s) 199, 807
TseI GCWGC 5 cut(s) 118, 286, 584, 590, 649
Tsp45I GTSAC 2 cut(s) 199, 807
TspDTI ATGAA 4 cut(s) 486, 508, 752, 761
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 3 cut(s) 96, 188, 263
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 99, 502, 578
XapI RAATTY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.