RLG00000012726
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016170
Physical Location & Seq
Forward (+)
21666758 .. 21667612
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012726

Sequence Viewer

Length: 855 bp
ATGGCCACACCACCCTCACCCACCGCCTCCCCGGTCTCCGCCACCGCCACCAAGAAGCCCCACCCGATCCCCTGGACCCACGAAGAAACCGTCCACCTAATCCAGTCCTACCAGGACAAATGGTACGAGCTCCGCCGAGGTCAGCTCAAGGCCAGCCAATGGGAGGAGGTCGCCGTCACCGTCGCCGCCCGCTGCGGCTACGACTACACCGAGCCCTCCAAGACCGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGTCACCGCTCCGTCAAGAAGCGCCTCGGCCTCAGCTTCGGGTCGGGTTGGCCCTACTTCGATCTCATGGAGCGGCTTGAACAGGGCCCCATGCCCATCTCCGCCAGACGGCCTTACCAGGAGGAGGAGGAATACGAAGAAGCCGAAGAAGAAGAAGAAGAAGCGGAGGATCGTAACGGCGAAGAAGAAGAGGTTGATGAGGAGGAGGAAGACAACTACAGGAAGTTGCAGAGTCTTGATTACATTCTTAGGAGACCCGCAATTGTGAACAGATTTTCTTCTGGAGCAAAAGAGGGCCACTTTCGGGACTCGGCGGCGGCGAAAAGGCCGAGGGAGGCCGCCGCAGACGACGACGACGGCTACTACGGCGATGTGGTGGATGGGCAGAGAGGAACAGAGATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTCGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

285

Amino Acids

32.98

Weight (kDa)

5.07

Isoelectric Point (pI)

68.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 25 - 114 1.2e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 159, 247
AccBSI CCGCTC 2 cut(s) 273, 337
AccII CGCG 1 cut(s) 701
AclWI GGATC 2 cut(s) 61, 441
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 7 cut(s) 159, 163, 247, 372, 388, 568, 834
AgsI TTSAA 2 cut(s) 344, 803
AjnI CCWGG 3 cut(s) 71, 111, 381
AluBI AGCT 5 cut(s) 130, 145, 256, 300, 676
AluI AGCT 5 cut(s) 130, 145, 256, 300, 676
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 40, 511
AlwI GGATC 2 cut(s) 61, 441
AoxI GGCC 9 cut(s) 3, 150, 292, 314, 349, 374, 559, 590, 600
ApaI GGGCCC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 192, 808
ArsI GACNNNNNNTTYG 3 cut(s) 75, 107, 824
AspLEI GCGC 2 cut(s) 288, 813
AspS9I GGNCC 5 cut(s) 75, 315, 349, 350, 559
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 9, 169, 260
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 353
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 132, 216, 353
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 179, 820
BccI CCATC 7 cut(s) 241, 368, 638, 658, 727, 766, 836
BceAI ACGGC 5 cut(s) 158, 389, 457, 637, 646
BciT130I CCWGG 3 cut(s) 73, 113, 383
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 40, 511
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 289
Bme1390I CCNGG 4 cut(s) 32, 73, 113, 383
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 5 cut(s) 75, 315, 349, 350, 559
BmiI GGNNCC 3 cut(s) 77, 351, 352
BmrFI CCNGG 4 cut(s) 32, 73, 113, 383
BmrI ACTGGG 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 480
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 737
BsaI GGTCTC 2 cut(s) 40, 511
BsaJI CCNNGG 5 cut(s) 30, 71, 136, 289, 593
Bsc4I CCNNNNNNNGG 7 cut(s) 159, 163, 247, 372, 388, 568, 834
Bse1I ACTGG 2 cut(s) 103, 232
Bse8I GATNNNNATC 1 cut(s) 737
BseBI CCWGG 3 cut(s) 73, 113, 383
BseDI CCNNGG 5 cut(s) 30, 71, 136, 289, 593
BseGI GGATG 2 cut(s) 649, 738
BseJI GATNNNNATC 1 cut(s) 737
BseLI CCNNNNNNNGG 7 cut(s) 159, 163, 247, 372, 388, 568, 834
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 2 cut(s) 103, 232
BseRI GAGGAG 5 cut(s) 179, 401, 404, 479, 482
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 179, 820
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 9 cut(s) 5, 152, 294, 316, 351, 376, 561, 592, 602
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 7 cut(s) 159, 163, 247, 372, 388, 568, 834
BsmAI GTCTC 2 cut(s) 40, 511
BsmFI GGGAC 1 cut(s) 584
BsnI GGCC 9 cut(s) 5, 152, 294, 316, 351, 376, 561, 592, 602
Bso31I GGTCTC 2 cut(s) 40, 511
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 132, 216, 353
Bsp143I GATC 4 cut(s) 66, 325, 433, 738
Bsp68I TCGCGA 1 cut(s) 701
BspANI GGCC 9 cut(s) 5, 152, 294, 316, 351, 376, 561, 592, 602
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 701
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 3 cut(s) 77, 351, 352
BspPI GGATC 2 cut(s) 61, 441
BspTNI GGTCTC 2 cut(s) 40, 511
BsrBI CCGCTC 2 cut(s) 273, 337
BsrI ACTGG 2 cut(s) 103, 232
BssECI CCNNGG 5 cut(s) 30, 71, 136, 289, 593
BssMI GATC 4 cut(s) 66, 325, 433, 738
Bst2UI CCWGG 3 cut(s) 73, 113, 383
Bst4CI ACNGT 2 cut(s) 91, 181
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 4 cut(s) 154, 190, 263, 678
BstDEI CTNAG 2 cut(s) 296, 512
BstF5I GGATG 2 cut(s) 649, 738
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 2 cut(s) 288, 813
BstKTI GATC 4 cut(s) 69, 328, 436, 741
BstMAI GTCTC 2 cut(s) 40, 511
BstMBI GATC 4 cut(s) 66, 325, 433, 738
BstMWI GCNNNNNNNGC 2 cut(s) 262, 630
BstNI CCWGG 3 cut(s) 73, 113, 383
BstSCI CCNGG 4 cut(s) 30, 71, 111, 381
BstSFI CTRYAG 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 179, 820
BstV2I GAAGAC 1 cut(s) 480
BsuRI GGCC 9 cut(s) 5, 152, 294, 316, 351, 376, 561, 592, 602
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 649, 738
BtsIMutI CAGTG 1 cut(s) 239
BtuMI TCGCGA 1 cut(s) 701
Cac8I GCNNGC 4 cut(s) 154, 190, 263, 678
CciI TCATGA 1 cut(s) 741
CfoI GCGC 2 cut(s) 288, 813
Cfr13I GGNCC 5 cut(s) 75, 315, 349, 350, 559
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 331, 355, 742
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 296, 512
DpnI GATC 4 cut(s) 68, 327, 435, 740
DpnII GATC 4 cut(s) 66, 325, 433, 738
DraIII CACNNNGTG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 4 cut(s) 28, 122, 248, 355
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 3 cut(s) 132, 216, 353
Eco31I GGTCTC 2 cut(s) 40, 511
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 2 cut(s) 349, 350
EcoRII CCWGG 3 cut(s) 71, 111, 381
EcoT38I GRGCYC 3 cut(s) 132, 216, 353
FaeI CATG 3 cut(s) 334, 358, 745
FaiI YATR 5 cut(s) 332, 356, 728, 743, 794
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 330, 354, 741
FauI CCCGC 2 cut(s) 197, 529
FokI GGATG 2 cut(s) 656, 745
FriOI GRGCYC 3 cut(s) 132, 216, 353
GlaI GCGC 2 cut(s) 287, 812
GsuI CTGGAG 1 cut(s) 567
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 9 cut(s) 5, 152, 294, 316, 351, 376, 561, 592, 602
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 288, 813
Hin1II CATG 3 cut(s) 334, 358, 745
Hin6I GCGC 2 cut(s) 286, 811
HinP1I GCGC 2 cut(s) 286, 811
HinfI GANTC 4 cut(s) 496, 572, 796, 824
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 9, 169, 260
Hpy166II GTNNAC 2 cut(s) 94, 532
Hpy188III TCNNGA 6 cut(s) 280, 500, 546, 569, 700, 742
Hpy8I GTNNAC 2 cut(s) 94, 532
Hpy99I CGWCG 5 cut(s) 185, 617, 620, 623, 685
HpyCH4III ACNGT 2 cut(s) 91, 181
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 630
HpyF3I CTNAG 2 cut(s) 296, 512
Hsp92II CATG 3 cut(s) 334, 358, 745
HspAI GCGC 2 cut(s) 286, 811
Kzo9I GATC 4 cut(s) 66, 325, 433, 738
LmnI GCTCC 6 cut(s) 135, 261, 278, 334, 548, 673
Lsp1109I GCAGC 2 cut(s) 179, 820
MaeIII GTNAC 3 cut(s) 175, 266, 437
MalI GATC 4 cut(s) 68, 327, 435, 740
MbiI CCGCTC 2 cut(s) 273, 337
MboI GATC 4 cut(s) 66, 325, 433, 738
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 3 cut(s) 132, 216, 353
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 525, 816
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 505, 566
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 4 cut(s) 32, 73, 113, 383
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 3 cut(s) 73, 113, 383
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 2 cut(s) 262, 630
NciI CCSGG 1 cut(s) 32
NdeII GATC 4 cut(s) 66, 325, 433, 738
NlaIII CATG 3 cut(s) 334, 358, 745
NlaIV GGNNCC 3 cut(s) 77, 351, 352
NmeAIII GCCGAG 4 cut(s) 161, 270, 554, 618
NmuCI GTSAC 2 cut(s) 175, 266
NruI TCGCGA 1 cut(s) 701
PagI TCATGA 1 cut(s) 741
PcsI WCGNNNNNNNCGW 5 cut(s) 87, 177, 207, 405, 581
PfeI GAWTC 2 cut(s) 796, 824
PflMI CCANNNNNTGG 2 cut(s) 159, 247
PleI GAGTC 2 cut(s) 504, 566
PpsI GAGTC 2 cut(s) 504, 566
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 71, 111, 381
PspGI CCWGG 3 cut(s) 71, 111, 381
PspN4I GGNNCC 3 cut(s) 77, 351, 352
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 5 cut(s) 75, 315, 349, 350, 559
RruI TCGCGA 1 cut(s) 701
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacI GAGCTC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 66, 325, 433, 738
Sau96I GGNCC 5 cut(s) 75, 315, 349, 350, 559
SchI GAGTC 2 cut(s) 505, 566
ScrFI CCNGG 4 cut(s) 32, 73, 113, 383
SduI GDGCHC 3 cut(s) 132, 216, 353
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 525, 816
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 4 cut(s) 30, 71, 111, 381
TaaI ACNGT 2 cut(s) 91, 181
TaqI TCGA 2 cut(s) 324, 831
TasI AATT 2 cut(s) 525, 816
TauI GCSGC 8 cut(s) 188, 198, 240, 340, 581, 584, 605, 608
TfiI GAWTC 2 cut(s) 796, 824
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 2 cut(s) 175, 266
TseI GCWGC 2 cut(s) 192, 808
Tsp45I GTSAC 2 cut(s) 175, 266
TspGWI ACGGA 4 cut(s) 265, 698, 767, 799
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 2 cut(s) 159, 247
VpaK11BI GGWCC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.