RchiOBHm_Chr6g0284711
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016170
Physical Location & Seq
Reverse (-)
48063997 .. 48065417
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25533

Sequence Viewer

Length: 870 bp
ATGGCCACACCACCCTCACCCACCGCCTCGCCCTCCGCCTCCCCGGTCTCCGCCACCGCCACCGCCACCAAGAAGCCCCACCCGATCCCCTGGACCCACGAAGAAACCGTCCACCTAATCCAGTCCTACCAGGACAAATGGTACGAACTCCGCCGAGGTCAGCTCAAGGCCAGCCAATGGGAGGAGGTCGCCGTCACCGTCGCCGCCCGATGCGGCTACGAATACACCGAGCCCTCCAAGACCGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGTCACCGCTCCGTCAAGAAGCGCCTCGGCCTCAGCTTCGGGTCGGGTTGGCCCTACTTCGATCTCATGGAGCGGCTCGAACAGGGCCCCATGCCCATCTCCGCCAGACGGCCGTACCAGGAGGAGGAGGAAGAGGACGAAGAAGCCGAAGAAGAAGAAGAAGCGGAGGATCATGGCGGCGAAGAAGAAGAGGTTGATGAGGAGGAGGAAGACAACTACAGGAAGTTGCAGAGTCTTGATTACATTCTGAGGAGACCCGCAATTGTGAACAGATTTTCTTCCGGAGCAAAAGAGGGCCACTTTCGGGACTCGACGGCGGCGAAAAGGCCGAGGGAGTCCGCCGCAGACGACGACGGCTACTACGGCGATGTGGTGGATGGGCAGAGAGGAACAGAGATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTTGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

289

Amino Acids

33.32

Weight (kDa)

5.07

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 31 - 120 1.3e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 177, 265
AccBSI CCGCTC 2 cut(s) 291, 355
AccIII TCCGGA 1 cut(s) 563
AclWI GGATC 2 cut(s) 79, 459
AcoI YGGCCR 2 cut(s) 3, 392
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 2 cut(s) 143, 398
AfiI CCNNNNNNNGG 7 cut(s) 177, 181, 265, 390, 406, 586, 849
AgsI TTSAA 1 cut(s) 818
AjnI CCWGG 3 cut(s) 89, 129, 399
AluBI AGCT 4 cut(s) 163, 274, 318, 691
AluI AGCT 4 cut(s) 163, 274, 318, 691
Alw26I GTCTC 2 cut(s) 52, 529
AlwI GGATC 2 cut(s) 79, 459
Aor13HI TCCGGA 1 cut(s) 563
AoxI GGCC 8 cut(s) 3, 168, 310, 332, 367, 392, 577, 608
ApaI GGGCCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 823
ArsI GACNNNNNNTTYG 3 cut(s) 93, 125, 839
AspLEI GCGC 2 cut(s) 306, 828
AspS9I GGNCC 5 cut(s) 93, 333, 367, 368, 577
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 9, 187, 278
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 234, 371
BbsI GAAGAC 1 cut(s) 498
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 835
BccI CCATC 7 cut(s) 259, 386, 653, 673, 742, 781, 851
BceAI ACGGC 6 cut(s) 176, 379, 407, 612, 652, 661
BciT130I CCWGG 3 cut(s) 91, 131, 401
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 52, 529
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 1 cut(s) 307
BisI GCNGC 8 cut(s) 204, 214, 256, 356, 460, 600, 624, 824
BlsI GCNGC 8 cut(s) 205, 215, 257, 357, 461, 601, 625, 825
Bme1390I CCNGG 4 cut(s) 44, 91, 131, 401
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 5 cut(s) 93, 333, 367, 368, 577
BmiI GGNNCC 3 cut(s) 95, 369, 370
BmrFI CCNGG 4 cut(s) 44, 91, 131, 401
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 752
BsaI GGTCTC 2 cut(s) 52, 529
BsaJI CCNNGG 5 cut(s) 42, 89, 154, 307, 611
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 7 cut(s) 177, 181, 265, 390, 406, 586, 849
Bse1I ACTGG 2 cut(s) 121, 250
Bse8I GATNNNNATC 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 563
BseBI CCWGG 3 cut(s) 91, 131, 401
BseDI CCNNGG 5 cut(s) 42, 89, 154, 307, 611
BseGI GGATG 2 cut(s) 664, 753
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 7 cut(s) 177, 181, 265, 390, 406, 586, 849
BseMII CTCAG 2 cut(s) 328, 521
BseNI ACTGG 2 cut(s) 121, 250
BseRI GAGGAG 6 cut(s) 197, 419, 422, 497, 500, 547
BseSI GKGCMC 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 835
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 8 cut(s) 5, 170, 312, 334, 369, 394, 579, 610
BsiEI CGRYCG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 44, 564
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 7 cut(s) 177, 181, 265, 390, 406, 586, 849
BsmAI GTCTC 2 cut(s) 52, 529
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 8 cut(s) 5, 170, 312, 334, 369, 394, 579, 610
Bso31I GGTCTC 2 cut(s) 52, 529
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 234, 371
Bsp13I TCCGGA 1 cut(s) 563
Bsp143I GATC 4 cut(s) 84, 343, 451, 753
BspANI GGCC 8 cut(s) 5, 170, 312, 334, 369, 394, 579, 610
BspCNI CTCAG 2 cut(s) 327, 522
BspEI TCCGGA 1 cut(s) 563
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 3 cut(s) 95, 369, 370
BspPI GGATC 2 cut(s) 79, 459
BspTNI GGTCTC 2 cut(s) 52, 529
BsrBI CCGCTC 2 cut(s) 291, 355
BsrI ACTGG 2 cut(s) 121, 250
BssECI CCNNGG 5 cut(s) 42, 89, 154, 307, 611
BssMI GATC 4 cut(s) 84, 343, 451, 753
Bst2UI CCWGG 3 cut(s) 91, 131, 401
Bst4CI ACNGT 2 cut(s) 109, 199
Bst6I CTCTTC 2 cut(s) 408, 465
BstC8I GCNNGC 3 cut(s) 172, 281, 693
BstDEI CTNAG 2 cut(s) 314, 530
BstF5I GGATG 2 cut(s) 664, 753
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 2 cut(s) 306, 828
BstKTI GATC 4 cut(s) 87, 346, 454, 756
BstMAI GTCTC 2 cut(s) 52, 529
BstMBI GATC 4 cut(s) 84, 343, 451, 753
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 2 cut(s) 280, 645
BstNI CCWGG 3 cut(s) 91, 131, 401
BstSCI CCNGG 4 cut(s) 42, 89, 129, 399
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 835
BstV2I GAAGAC 1 cut(s) 498
BstZI CGGCCG 1 cut(s) 392
BsuRI GGCC 8 cut(s) 5, 170, 312, 334, 369, 394, 579, 610
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 664, 753
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 172, 281, 693
CciI TCATGA 1 cut(s) 756
CfoI GCGC 2 cut(s) 306, 828
Cfr13I GGNCC 5 cut(s) 93, 333, 367, 368, 577
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 142, 397
CviAII CATG 4 cut(s) 349, 373, 455, 757
CviQI GTAC 2 cut(s) 142, 397
DdeI CTNAG 2 cut(s) 314, 530
DpnI GATC 4 cut(s) 86, 345, 453, 755
DpnII GATC 4 cut(s) 84, 343, 451, 753
DraIII CACNNNGTG 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 3, 392
EagI CGGCCG 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 408, 465
EarI CTCTTC 2 cut(s) 408, 465
EciI GGCGGA 6 cut(s) 25, 40, 140, 266, 373, 610
EclXI CGGCCG 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 234, 371
Eco31I GGTCTC 2 cut(s) 52, 529
Eco47I GGWCC 1 cut(s) 93
Eco52I CGGCCG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 367, 368
EcoRII CCWGG 3 cut(s) 89, 129, 399
EcoT38I GRGCYC 2 cut(s) 234, 371
FaeI CATG 4 cut(s) 352, 376, 458, 760
FaiI YATR 6 cut(s) 350, 374, 456, 743, 758, 809
FaqI GGGAC 1 cut(s) 602
FatI CATG 4 cut(s) 348, 372, 454, 756
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 8 cut(s) 204, 214, 256, 356, 460, 600, 624, 824
FokI GGATG 2 cut(s) 671, 760
FriOI GRGCYC 2 cut(s) 234, 371
Fsp4HI GCNGC 8 cut(s) 204, 214, 256, 356, 460, 600, 624, 824
GlaI GCGC 2 cut(s) 305, 827
GluI GCNGC 8 cut(s) 204, 214, 256, 356, 460, 600, 624, 824
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 8 cut(s) 5, 170, 312, 334, 369, 394, 579, 610
HapII CCGG 2 cut(s) 44, 564
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 306, 828
Hin1II CATG 4 cut(s) 352, 376, 458, 760
Hin6I GCGC 2 cut(s) 304, 826
HinP1I GCGC 2 cut(s) 304, 826
HinfI GANTC 5 cut(s) 514, 590, 617, 811, 839
HpaII CCGG 2 cut(s) 44, 564
HphI GGTGA 3 cut(s) 9, 187, 278
Hpy166II GTNNAC 2 cut(s) 112, 550
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 5 cut(s) 298, 518, 564, 587, 757
Hpy8I GTNNAC 2 cut(s) 112, 550
Hpy99I CGWCG 5 cut(s) 203, 598, 635, 638, 700
HpyCH4III ACNGT 2 cut(s) 109, 199
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 645
HpyF3I CTNAG 2 cut(s) 314, 530
Hsp92II CATG 4 cut(s) 352, 376, 458, 760
HspAI GCGC 2 cut(s) 304, 826
Kpn2I TCCGGA 1 cut(s) 563
Kzo9I GATC 4 cut(s) 84, 343, 451, 753
LmnI GCTCC 5 cut(s) 279, 296, 352, 566, 688
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 193, 284
MalI GATC 4 cut(s) 86, 345, 453, 755
MbiI CCGCTC 2 cut(s) 291, 355
MboI GATC 4 cut(s) 84, 343, 451, 753
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 234, 371
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 543, 831
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 523, 584, 626
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 44, 564
MspR9I CCNGG 4 cut(s) 44, 91, 131, 401
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 3 cut(s) 91, 131, 401
MwoI GCNNNNNNNGC 2 cut(s) 280, 645
NciI CCSGG 1 cut(s) 44
NdeII GATC 4 cut(s) 84, 343, 451, 753
NlaIII CATG 4 cut(s) 352, 376, 458, 760
NlaIV GGNNCC 3 cut(s) 95, 369, 370
NmeAIII GCCGAG 3 cut(s) 179, 288, 636
NmuCI GTSAC 2 cut(s) 193, 284
PagI TCATGA 1 cut(s) 756
PcsI WCGNNNNNNNCGW 5 cut(s) 105, 195, 225, 426, 599
PfeI GAWTC 2 cut(s) 811, 839
PflMI CCANNNNNTGG 2 cut(s) 177, 265
PkrI GCNGC 8 cut(s) 205, 215, 257, 357, 461, 601, 625, 825
PleI GAGTC 3 cut(s) 522, 584, 625
PpsI GAGTC 3 cut(s) 522, 584, 625
Psp6I CCWGG 3 cut(s) 89, 129, 399
PspGI CCWGG 3 cut(s) 89, 129, 399
PspN4I GGNNCC 3 cut(s) 95, 369, 370
PspOMI GGGCCC 1 cut(s) 367
PspPI GGNCC 5 cut(s) 93, 333, 367, 368, 577
RsaI GTAC 2 cut(s) 143, 398
RsaNI GTAC 2 cut(s) 142, 397
SatI GCNGC 8 cut(s) 204, 214, 256, 356, 460, 600, 624, 824
Sau3AI GATC 4 cut(s) 84, 343, 451, 753
Sau96I GGNCC 5 cut(s) 93, 333, 367, 368, 577
SchI GAGTC 3 cut(s) 523, 584, 626
ScrFI CCNGG 4 cut(s) 44, 91, 131, 401
SduI GDGCHC 2 cut(s) 234, 371
SetI ASST 9 cut(s) 117, 160, 165, 189, 276, 320, 477, 693, 776
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 499
SinI GGWCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 543, 831
StyD4I CCNGG 4 cut(s) 42, 89, 129, 399
TaaI ACNGT 2 cut(s) 109, 199
TaqI TCGA 4 cut(s) 342, 360, 593, 846
TasI AATT 2 cut(s) 543, 831
TauI GCSGC 7 cut(s) 206, 216, 258, 358, 462, 602, 626
TfiI GAWTC 2 cut(s) 811, 839
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 2 cut(s) 193, 284
TseI GCWGC 1 cut(s) 823
Tsp45I GTSAC 2 cut(s) 193, 284
TspGWI ACGGA 4 cut(s) 283, 713, 782, 814
TspRI CASTG 1 cut(s) 257
Van91I CCANNNNNTGG 2 cut(s) 177, 265
VpaK11BI GGWCC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.