MD10G1163600.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016170
Physical Location & Seq
Reverse (-)
25439504 .. 25440633
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1163600.v1.1.491

Sequence Viewer

Length: 837 bp
ATGTCCACCCCACCCCCGCCCTCGCCCCCGGCCTCCCCCACGGCCTCAGTCTCCGCCTCGCTCACACCCTCCGCCAAGAAGCCCCAGCCTCTGCCGTGGACCCACGAGGAGACGGTGCAGCTGATCCGGGCCTACCAGGAGAAGTGGTACGCGCTGAGGAGGGGACAGCTGAAGTCGAGCCAGTGGGAGGAGGTGGCGGTGACCGTGGCGGCTCGGTGCGGCTACGAGTACGGCGAGCCGTCGAAATCCTCCACGCAGTGCCGCCACAAGATGGAGAAGCTCCGGCAGCGACACCGCGGCGTTAAGAAGCGCCTAGGCCAGCGGACCAAGTCCGGTTGGCCCTTCTTCGAGCTCATGGAGCAGATGGAGCGCGGGCCCATGCCCATCTCGGCCATGCCAATGGGGGAGATGCCACATCAGCAAGAGGAAGAAGAGCGTGATTATCACGGCGGTGGCGATGACGAAGACGATGAGGAGAACTCCAACAGGGTCCGGAGCATTGAGTACATCCTGCGGAGGCCGACGTTTGTGAACAGATTTTCCGGAAAAGACCCGTTTTTGCAGGGACCGGCGGCGTTAAAGAGGGGGAGAGAGGCGGTGGACGACGGAGATGTGGTGGAGCCGGCGCAGCAAAAGGGGAGGGAGATGGTGGTGGAATTAGCAGACGAGATGAGGGCATTCGCCCAGCAGTTGATCGGGGTTGAGAACAGGAGGATGGAGATGATGAAGGAAACGGAGAGGTGTAGAATGGAGATGGAGAAGAAGAGGATGAGCATGATCCTGCAGTCACAGCAGAAGATTATTGACTCCATTAACACAGCTTTCGGCAGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

279

Amino Acids

31.89

Weight (kDa)

7.72

Isoelectric Point (pI)

68.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 33 - 122 3.5e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 3 cut(s) 152, 297, 372
AccIII TCCGGA 2 cut(s) 492, 542
AclWI GGATC 2 cut(s) 118, 772
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 3 cut(s) 149, 230, 506
AfiI CCNNNNNNNGG 2 cut(s) 187, 271
AjnI CCWGG 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 450
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
AluBI AGCT 5 cut(s) 121, 169, 280, 352, 821
AluI AGCT 5 cut(s) 121, 169, 280, 352, 821
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 55, 104
AlwI GGATC 2 cut(s) 118, 772
AlwNI CAGNNNCTG 2 cut(s) 91, 834
Aor13HI TCCGGA 2 cut(s) 492, 542
AoxI GGCC 8 cut(s) 30, 42, 129, 316, 338, 374, 390, 518
ApaI GGGCCC 1 cut(s) 378
ApeKI GCWGC 4 cut(s) 118, 286, 628, 828
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 4 cut(s) 154, 312, 372, 628
AspS9I GGNCC 8 cut(s) 99, 129, 324, 339, 374, 375, 490, 566
AsuC2I CCSGG 2 cut(s) 29, 128
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 4 cut(s) 99, 324, 490, 566
AvrII CCTAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 354, 378
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 130, 298, 640
BccI CCATC 6 cut(s) 265, 358, 392, 640, 709, 748
BceAI ACGGC 5 cut(s) 57, 79, 223, 247, 463
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 2 cut(s) 29, 128
BcoDI GTCTC 2 cut(s) 55, 104
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 782
BfoI RGCGCY 1 cut(s) 313
BisI GCNGC 9 cut(s) 119, 210, 220, 262, 287, 298, 573, 629, 829
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 9 cut(s) 120, 211, 221, 263, 288, 299, 574, 630, 830
Bme1390I CCNGG 3 cut(s) 29, 128, 137
Bme18I GGWCC 4 cut(s) 99, 324, 490, 566
BmgT120I GGNCC 8 cut(s) 99, 129, 324, 339, 374, 375, 490, 566
BmiI GGNNCC 5 cut(s) 101, 376, 491, 567, 621
BmrFI CCNGG 3 cut(s) 29, 128, 137
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 29, 128
BsaJI CCNNGG 6 cut(s) 27, 39, 95, 204, 295, 313
BsaWI WCCGGW 3 cut(s) 332, 492, 542
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 600, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 271
Bse118I RCCGGY 2 cut(s) 568, 622
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 2 cut(s) 492, 542
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 6 cut(s) 27, 39, 95, 204, 295, 313
BseGI GGATG 3 cut(s) 507, 720, 774
BseLI CCNNNNNNNGG 2 cut(s) 187, 271
BseMII CTCAG 2 cut(s) 60, 146
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 4 cut(s) 122, 172, 203, 488
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 3 cut(s) 130, 298, 640
BseYI CCCAGC 2 cut(s) 84, 684
BsgI GTGCAG 1 cut(s) 137
Bsh1236I CGCG 3 cut(s) 152, 297, 372
BshFI GGCC 8 cut(s) 32, 44, 131, 318, 340, 376, 392, 520
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 8 cut(s) 29, 127, 283, 333, 493, 543, 569, 623
BslFI GGGAC 2 cut(s) 177, 579
BslI CCNNNNNNNGG 2 cut(s) 187, 271
BsmAI GTCTC 2 cut(s) 55, 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 177, 579
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 8 cut(s) 32, 44, 131, 318, 340, 376, 392, 520
Bsp120I GGGCCC 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 354, 378
Bsp13I TCCGGA 2 cut(s) 492, 542
Bsp143I GATC 3 cut(s) 123, 693, 777
BspANI GGCC 8 cut(s) 32, 44, 131, 318, 340, 376, 392, 520
BspCNI CTCAG 2 cut(s) 59, 147
BspEI TCCGGA 2 cut(s) 492, 542
BspFNI CGCG 3 cut(s) 152, 297, 372
BspLI GGNNCC 5 cut(s) 101, 376, 491, 567, 621
BspMAI CTGCAG 1 cut(s) 786
BspPI GGATC 2 cut(s) 118, 772
BspQI GCTCTTC 1 cut(s) 426
BsrFI RCCGGY 2 cut(s) 568, 622
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 2 cut(s) 568, 622
BssECI CCNNGG 6 cut(s) 27, 39, 95, 204, 295, 313
BssMI GATC 3 cut(s) 123, 693, 777
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 115, 205
Bst6I CTCTTC 2 cut(s) 426, 758
BstC8I GCNNGC 4 cut(s) 236, 320, 374, 624
BstDEI CTNAG 2 cut(s) 46, 155
BstDSI CCRYGG 4 cut(s) 39, 95, 204, 295
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 3 cut(s) 507, 720, 774
BstFNI CGCG 3 cut(s) 152, 297, 372
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 4 cut(s) 154, 312, 372, 628
BstKTI GATC 3 cut(s) 126, 696, 780
BstMAI GTCTC 2 cut(s) 55, 104
BstMBI GATC 3 cut(s) 123, 693, 777
BstMWI GCNNNNNNNGC 6 cut(s) 286, 358, 367, 418, 628, 790
BstNI CCWGG 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 27, 126, 135
BstSFI CTRYAG 1 cut(s) 782
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 3 cut(s) 152, 297, 372
BstV1I GCAGC 3 cut(s) 130, 298, 640
BstV2I GAAGAC 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 8 cut(s) 32, 44, 131, 318, 340, 376, 392, 520
BtgI CCRYGG 4 cut(s) 39, 95, 204, 295
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 507, 720, 774
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 188, 263
Cac8I GCNNGC 4 cut(s) 236, 320, 374, 624
CaiI CAGNNNCTG 2 cut(s) 91, 834
CfoI GCGC 4 cut(s) 154, 312, 372, 628
Cfr10I RCCGGY 2 cut(s) 568, 622
Cfr13I GGNCC 8 cut(s) 99, 129, 324, 339, 374, 375, 490, 566
Cfr42I CCGCGG 1 cut(s) 298
Csp6I GTAC 3 cut(s) 148, 229, 505
CviAII CATG 4 cut(s) 355, 379, 394, 775
CviQI GTAC 3 cut(s) 148, 229, 505
DdeI CTNAG 2 cut(s) 46, 155
DpnI GATC 3 cut(s) 125, 695, 779
DpnII GATC 3 cut(s) 123, 693, 777
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 426, 758
EarI CTCTTC 2 cut(s) 426, 758
EciI GGCGGA 2 cut(s) 43, 61
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 354, 378
Eco47I GGWCC 4 cut(s) 99, 324, 490, 566
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 354, 378
ErhI CCWWGG 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 4 cut(s) 358, 382, 397, 778
FaiI YATR 4 cut(s) 356, 380, 395, 776
FaqI GGGAC 2 cut(s) 177, 579
FatI CATG 4 cut(s) 354, 378, 393, 774
FauI CCCGC 2 cut(s) 24, 365
Fnu4HI GCNGC 9 cut(s) 119, 210, 220, 262, 287, 298, 573, 629, 829
FokI GGATG 3 cut(s) 494, 727, 781
FriOI GRGCYC 2 cut(s) 354, 378
Fsp4HI GCNGC 9 cut(s) 119, 210, 220, 262, 287, 298, 573, 629, 829
FspBI CTAG 1 cut(s) 314
GlaI GCGC 4 cut(s) 153, 311, 371, 627
GluI GCNGC 9 cut(s) 119, 210, 220, 262, 287, 298, 573, 629, 829
GsaI CCCAGC 2 cut(s) 88, 688
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 8 cut(s) 32, 44, 131, 318, 340, 376, 392, 520
HapII CCGG 8 cut(s) 29, 127, 283, 333, 493, 543, 569, 623
HhaI GCGC 4 cut(s) 154, 312, 372, 628
Hin1II CATG 4 cut(s) 358, 382, 397, 778
Hin6I GCGC 4 cut(s) 152, 310, 370, 626
HinP1I GCGC 4 cut(s) 152, 310, 370, 626
HinfI GANTC 1 cut(s) 806
HpaII CCGG 8 cut(s) 29, 127, 283, 333, 493, 543, 569, 623
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 4 cut(s) 6, 99, 532, 601
Hpy188III TCNNGA 2 cut(s) 493, 543
Hpy8I GTNNAC 4 cut(s) 6, 99, 532, 601
Hpy99I CGWCG 3 cut(s) 244, 526, 608
HpyAV CCTTC 2 cut(s) 352, 721
HpyCH4III ACNGT 2 cut(s) 115, 205
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 3 cut(s) 118, 562, 784
HpyF10VI GCNNNNNNNGC 6 cut(s) 286, 358, 367, 418, 628, 790
HpyF3I CTNAG 2 cut(s) 46, 155
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 4 cut(s) 358, 382, 397, 778
HspAI GCGC 4 cut(s) 152, 310, 370, 626
Kpn2I TCCGGA 2 cut(s) 492, 542
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
KspI CCGCGG 1 cut(s) 298
Kzo9I GATC 3 cut(s) 123, 693, 777
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 5 cut(s) 285, 358, 367, 495, 619
Lsp1109I GCAGC 3 cut(s) 130, 298, 640
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 199, 786
MalI GATC 3 cut(s) 125, 695, 779
MboI GATC 3 cut(s) 123, 693, 777
MboII GAAGA 7 cut(s) 337, 440, 443, 476, 772, 775, 808
MhlI GDGCHC 2 cut(s) 354, 378
MluCI AATT 1 cut(s) 656
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 507
MroI TCCGGA 2 cut(s) 492, 542
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 3 cut(s) 303, 578, 813
MslI CAYNNNNRTG 2 cut(s) 398, 450
MspA1I CMGCKG 4 cut(s) 121, 169, 297, 322
MspI CCGG 8 cut(s) 29, 127, 283, 333, 493, 543, 569, 623
MspR9I CCNGG 3 cut(s) 29, 128, 137
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 3 cut(s) 152, 297, 372
MwoI GCNNNNNNNGC 6 cut(s) 286, 358, 367, 418, 628, 790
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 2 cut(s) 29, 128
NdeII GATC 3 cut(s) 123, 693, 777
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 4 cut(s) 358, 382, 397, 778
NlaIV GGNNCC 5 cut(s) 101, 376, 491, 567, 621
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 199, 786
OliI CACNNNNGTG 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 453
PctI GAATGC 1 cut(s) 677
PdiI GCCGGC 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 9 cut(s) 120, 211, 221, 263, 288, 299, 574, 630, 830
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 199
PspFI CCCAGC 2 cut(s) 84, 684
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 5 cut(s) 101, 376, 491, 567, 621
PspOMI GGGCCC 1 cut(s) 374
PspPI GGNCC 8 cut(s) 99, 129, 324, 339, 374, 375, 490, 566
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 2 cut(s) 91, 834
PsyI GACNNNGTC 1 cut(s) 328
PvuII CAGCTG 2 cut(s) 121, 169
RsaI GTAC 3 cut(s) 149, 230, 506
RsaNI GTAC 3 cut(s) 148, 229, 505
RseI CAYNNNNRTG 2 cut(s) 398, 450
SacI GAGCTC 1 cut(s) 354
SacII CCGCGG 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 303, 578, 813
SatI GCNGC 9 cut(s) 119, 210, 220, 262, 287, 298, 573, 629, 829
Sau3AI GATC 3 cut(s) 123, 693, 777
Sau96I GGNCC 8 cut(s) 99, 129, 324, 339, 374, 375, 490, 566
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 3 cut(s) 29, 128, 137
SduI GDGCHC 2 cut(s) 354, 378
SetI ASST 9 cut(s) 123, 171, 195, 282, 354, 527, 743, 823, 836
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 782
Sfr303I CCGCGG 1 cut(s) 298
SgrBI CCGCGG 1 cut(s) 298
SinI GGWCC 4 cut(s) 99, 324, 490, 566
SmiMI CAYNNNNRTG 2 cut(s) 398, 450
Sse9I AATT 1 cut(s) 656
SspMI CTAG 1 cut(s) 314
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 3 cut(s) 27, 126, 135
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 115, 205
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 176, 242, 348
TasI AATT 1 cut(s) 656
TatI WGTACW 1 cut(s) 504
TauI GCSGC 5 cut(s) 212, 222, 264, 300, 575
Tru1I TTAA 3 cut(s) 303, 578, 813
Tru9I TTAA 3 cut(s) 303, 578, 813
TscAI CASTG 2 cut(s) 188, 263
TseFI GTSAC 2 cut(s) 199, 786
TseI GCWGC 4 cut(s) 118, 286, 628, 828
Tsp45I GTSAC 2 cut(s) 199, 786
TspDTI ATGAA 1 cut(s) 740
TspGWI ACGGA 2 cut(s) 621, 749
TspRI CASTG 2 cut(s) 188, 263
Tth111I GACNNNGTC 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 4 cut(s) 99, 324, 490, 566
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.