Prupe.8G201900_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016170
Physical Location & Seq
Reverse (-)
19049301 .. 19051252
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G201900.1

Sequence Viewer

Length: 900 bp
ATGTCCACACCACCCCCGCCCTCGCCCACGGCCTCAGCCTCGGCCTCGGTCCCTGCCTCGCCAGTCTCCACCAAGAAGGCCCAGCCTCTGCCATGGACGCACGAAGAGACGGTGCAGATGATCCGGGCCTACCAGGAAAAGTGGTACAAGCTGAGAAGAGGTCCGCTCAAGTCGAGTCAATGGGAGGAGGTGGCGGTGACGGTGGCAGCTCGATGCGGCTACGAGCACGCCGAGCAGTCCAAGACCGCCACTCAGTGCCGTCATAAGATGGAGAAGCTCCGGCAACGGCACCGTACACTGAAGAAGCGCCTCCGGCCCGGGTCGAGGTCGCGTTGGCCCTTCTTCGAGCTCATGGAGAGCTTGGAGCGCGGTCCCATGCCCATCTCCTCCAGACCCATGGCTGTGATGCCATGTCAGCCAGAAGAAGAAGAAGAAGAAGAAGAGCAGCGTCATGATCGTCATGGCGTTGATGTTGACGGTGAGGATGATGATGAGGAGAATTCCAGTAAGGTGCGGAGTATTGATTACATACTACGGAGGCCCACGATTGTGAATAGGTTTTCTGGAGGACAAGCCTCGTTTTGGCAGGACACAGCCGCAGCCAAGAGATCGAGAGACGCGGTGGACGGTGGCGGTGGCTACAATGGCTATGTGGTGGAGCCGCCCCAGATGGGGGGAGAGATGGCTGTGGAATTAGCAGACGAAATTAGGGCTTTTGCGAAAAGGTTCATTGGGGTTGAGAACACGAGGATGGAGTTCATGAAGGAAACAGAGAGACGTAGATTGGAGATGGAGAAGAGGAGGATTGATATGATTCTGCAATCCCAGCAAAAGATTGTTGACTCCATTGACAAGGCCTTTGGCTCTTCTACCAACAATTGCCCTTCTCAACTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

300

Amino Acids

34.13

Weight (kDa)

7.69

Isoelectric Point (pI)

78.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 288
AccBSI CCGCTC 1 cut(s) 166
AccII CGCG 3 cut(s) 331, 369, 620
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 2 cut(s) 146, 295
AfiI CCNNNNNNNGG 5 cut(s) 324, 582, 671, 672, 673
AjnI CCWGG 1 cut(s) 132
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 5 cut(s) 151, 209, 277, 349, 360
AluI AGCT 5 cut(s) 151, 209, 277, 349, 360
Alw21I GWGCWC 2 cut(s) 228, 351
Alw26I GTCTC 4 cut(s) 70, 101, 609, 769
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 8 cut(s) 30, 42, 78, 126, 314, 335, 539, 855
ApeKI GCWGC 3 cut(s) 206, 445, 599
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 309, 369
AspS9I GGNCC 8 cut(s) 49, 79, 126, 161, 315, 336, 371, 540
AsuC2I CCSGG 3 cut(s) 125, 318, 319
AsuHPI GGTGA 2 cut(s) 208, 491
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 3 cut(s) 49, 161, 371
BanI GGYRCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 745
Bbv12I GWGCWC 2 cut(s) 228, 351
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 218, 457, 611
BccI CCATC 6 cut(s) 262, 389, 664, 676, 745, 784
BceAI ACGGC 3 cut(s) 45, 243, 302
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 3 cut(s) 125, 318, 319
BcoDI GTCTC 4 cut(s) 70, 101, 609, 769
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 6 cut(s) 207, 217, 446, 597, 600, 662
BlsI GCNGC 6 cut(s) 208, 218, 447, 598, 601, 663
Bme1390I CCNGG 4 cut(s) 125, 134, 318, 319
Bme18I GGWCC 3 cut(s) 49, 161, 371
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 8 cut(s) 49, 79, 126, 161, 315, 336, 371, 540
BmiI GGNNCC 4 cut(s) 51, 290, 373, 660
BmrFI CCNGG 4 cut(s) 125, 134, 318, 319
BmsI GCATC 2 cut(s) 203, 396
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 2 cut(s) 373, 585
Bpu10I CCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 3 cut(s) 125, 318, 319
BsaJI CCNNGG 6 cut(s) 27, 39, 45, 92, 317, 396
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 582, 671, 672, 673
Bse1I ACTGG 2 cut(s) 62, 504
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 6 cut(s) 27, 39, 45, 92, 317, 396
BseGI GGATG 2 cut(s) 490, 756
BseLI CCNNNNNNNGG 5 cut(s) 324, 582, 671, 672, 673
BseMII CTCAG 3 cut(s) 48, 143, 266
BseNI ACTGG 2 cut(s) 62, 504
BseRI GAGGAG 4 cut(s) 200, 376, 509, 814
BseXI GCAGC 3 cut(s) 218, 457, 611
BseYI CCCAGC 2 cut(s) 81, 825
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 3 cut(s) 331, 369, 620
BshFI GGCC 8 cut(s) 32, 44, 80, 128, 316, 337, 541, 857
BshNI GGYRCC 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 228, 351
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 4 cut(s) 124, 280, 313, 318
BslFI GGGAC 2 cut(s) 35, 357
BslI CCNNNNNNNGG 5 cut(s) 324, 582, 671, 672, 673
BsmAI GTCTC 4 cut(s) 70, 101, 609, 769
BsmBI CGTCTC 3 cut(s) 101, 609, 769
BsmFI GGGAC 2 cut(s) 35, 357
BsnI GGCC 8 cut(s) 32, 44, 80, 128, 316, 337, 541, 857
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 228, 351
Bsp143I GATC 3 cut(s) 120, 454, 608
Bsp19I CCATGG 2 cut(s) 92, 396
BspANI GGCC 8 cut(s) 32, 44, 80, 128, 316, 337, 541, 857
BspCNI CTCAG 3 cut(s) 47, 144, 265
BspFNI CGCG 3 cut(s) 331, 369, 620
BspHI TCATGA 2 cut(s) 451, 759
BspLI GGNNCC 4 cut(s) 51, 290, 373, 660
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 2 cut(s) 435, 871
BspT107I GGYRCC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 166
BsrI ACTGG 2 cut(s) 62, 504
BssECI CCNNGG 6 cut(s) 27, 39, 45, 92, 317, 396
BssMI GATC 3 cut(s) 120, 454, 608
BssSI CACGAG 1 cut(s) 745
BssT1I CCWWGG 2 cut(s) 92, 396
Bst2BI CACGAG 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 5 cut(s) 112, 202, 293, 479, 629
Bst6I CTCTTC 5 cut(s) 99, 151, 435, 791, 871
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 34, 152, 252
BstDSI CCRYGG 3 cut(s) 27, 92, 396
BstF5I GGATG 2 cut(s) 490, 756
BstFNI CGCG 3 cut(s) 331, 369, 620
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 2 cut(s) 309, 369
BstKTI GATC 3 cut(s) 123, 457, 611
BstMAI GTCTC 4 cut(s) 70, 101, 609, 769
BstMBI GATC 3 cut(s) 120, 454, 608
BstMWI GCNNNNNNNGC 7 cut(s) 97, 232, 313, 366, 415, 645, 826
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 123, 132, 316, 317
BstUI CGCG 3 cut(s) 331, 369, 620
BstV1I GCAGC 3 cut(s) 218, 457, 611
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuRI GGCC 8 cut(s) 32, 44, 80, 128, 316, 337, 541, 857
BtgI CCRYGG 3 cut(s) 27, 92, 396
BtsCI GGATG 2 cut(s) 490, 756
BtsIMutI CAGTG 2 cut(s) 260, 296
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 88
CciI TCATGA 2 cut(s) 451, 759
CfoI GCGC 2 cut(s) 309, 369
Cfr13I GGNCC 8 cut(s) 49, 79, 126, 161, 315, 336, 371, 540
Cfr9I CCCGGG 1 cut(s) 317
CseI GACGC 3 cut(s) 106, 437, 626
Csp6I GTAC 2 cut(s) 145, 294
CviAII CATG 8 cut(s) 93, 352, 376, 397, 411, 452, 461, 760
CviQI GTAC 2 cut(s) 145, 294
DdeI CTNAG 3 cut(s) 34, 152, 252
DpnI GATC 3 cut(s) 122, 456, 610
DpnII GATC 3 cut(s) 120, 454, 608
DraIII CACNNNGTG 1 cut(s) 255
Eam1104I CTCTTC 5 cut(s) 99, 151, 435, 791, 871
EarI CTCTTC 5 cut(s) 99, 151, 435, 791, 871
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 92, 396
Eco147I AGGCCT 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 3 cut(s) 49, 161, 371
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 92, 396
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 92, 396
Esp3I CGTCTC 3 cut(s) 101, 609, 769
FaeI CATG 8 cut(s) 96, 355, 379, 400, 414, 455, 464, 763
FaqI GGGAC 2 cut(s) 35, 357
FatI CATG 8 cut(s) 92, 351, 375, 396, 410, 451, 460, 759
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 207, 217, 446, 597, 600, 662
FokI GGATG 2 cut(s) 497, 763
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 6 cut(s) 207, 217, 446, 597, 600, 662
GlaI GCGC 2 cut(s) 308, 368
GluI GCNGC 6 cut(s) 207, 217, 446, 597, 600, 662
GsaI CCCAGC 2 cut(s) 85, 829
GsuI CTGGAG 2 cut(s) 373, 585
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 8 cut(s) 32, 44, 80, 128, 316, 337, 541, 857
HapII CCGG 4 cut(s) 124, 280, 313, 318
HgaI GACGC 3 cut(s) 106, 437, 626
HhaI GCGC 2 cut(s) 309, 369
Hin1II CATG 8 cut(s) 96, 355, 379, 400, 414, 455, 464, 763
Hin6I GCGC 2 cut(s) 307, 367
HinP1I GCGC 2 cut(s) 307, 367
HincII GTYRAC 2 cut(s) 475, 841
HindII GTYRAC 2 cut(s) 475, 841
HinfI GANTC 3 cut(s) 175, 814, 842
HpaII CCGG 4 cut(s) 124, 280, 313, 318
HphI GGTGA 2 cut(s) 208, 491
Hpy166II GTNNAC 5 cut(s) 6, 296, 475, 625, 841
Hpy188III TCNNGA 5 cut(s) 390, 452, 564, 612, 760
Hpy8I GTNNAC 5 cut(s) 6, 296, 475, 625, 841
HpyAV CCTTC 4 cut(s) 70, 349, 757, 894
HpyCH4III ACNGT 5 cut(s) 112, 202, 293, 479, 629
HpyCH4IV ACGT 1 cut(s) 778
HpyCH4V TGCA 2 cut(s) 115, 820
HpyF10VI GCNNNNNNNGC 7 cut(s) 97, 232, 313, 366, 415, 645, 826
HpyF3I CTNAG 3 cut(s) 34, 152, 252
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 8 cut(s) 96, 355, 379, 400, 414, 455, 464, 763
HspAI GCGC 2 cut(s) 307, 367
Kzo9I GATC 3 cut(s) 120, 454, 608
LguI GCTCTTC 2 cut(s) 435, 871
LmnI GCTCC 3 cut(s) 282, 364, 658
Lsp1109I GCAGC 3 cut(s) 218, 457, 611
LweI GCATC 2 cut(s) 203, 396
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 122, 456, 610
MbiI CCGCTC 1 cut(s) 166
MboI GATC 3 cut(s) 120, 454, 608
MfeI CAATTG 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 228, 351
MluCI AATT 4 cut(s) 499, 692, 705, 877
MlyI GAGTC 2 cut(s) 184, 836
MroXI GAANNNNTTC 1 cut(s) 725
MslI CAYNNNNRTG 3 cut(s) 401, 548, 749
MspI CCGG 4 cut(s) 124, 280, 313, 318
MspR9I CCNGG 4 cut(s) 125, 134, 318, 319
MunI CAATTG 1 cut(s) 877
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 3 cut(s) 331, 369, 620
MwoI GCNNNNNNNGC 7 cut(s) 97, 232, 313, 366, 415, 645, 826
NciI CCSGG 3 cut(s) 125, 318, 319
NcoI CCATGG 2 cut(s) 92, 396
NdeII GATC 3 cut(s) 120, 454, 608
NlaIII CATG 8 cut(s) 96, 355, 379, 400, 414, 455, 464, 763
NlaIV GGNNCC 4 cut(s) 51, 290, 373, 660
NmeAIII GCCGAG 2 cut(s) 20, 256
NmuCI GTSAC 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 548
PagI TCATGA 2 cut(s) 451, 759
PceI AGGCCT 1 cut(s) 857
PciSI GCTCTTC 2 cut(s) 435, 871
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 6 cut(s) 208, 218, 447, 598, 601, 663
PleI GAGTC 2 cut(s) 183, 836
PpsI GAGTC 2 cut(s) 183, 836
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 132
PspFI CCCAGC 2 cut(s) 81, 825
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 51, 290, 373, 660
PspPI GGNCC 8 cut(s) 49, 79, 126, 161, 315, 336, 371, 540
PstNI CAGNNNCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 146, 295
RsaNI GTAC 2 cut(s) 145, 294
RseI CAYNNNNRTG 3 cut(s) 401, 548, 749
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 2 cut(s) 435, 871
SatI GCNGC 6 cut(s) 207, 217, 446, 597, 600, 662
Sau3AI GATC 3 cut(s) 120, 454, 608
Sau96I GGNCC 8 cut(s) 49, 79, 126, 161, 315, 336, 371, 540
SchI GAGTC 2 cut(s) 184, 836
ScrFI CCNGG 4 cut(s) 125, 134, 318, 319
SduI GDGCHC 2 cut(s) 228, 351
SfaNI GCATC 2 cut(s) 203, 396
SinI GGWCC 3 cut(s) 49, 161, 371
SmaI CCCGGG 1 cut(s) 319
SmiMI CAYNNNNRTG 3 cut(s) 401, 548, 749
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 4 cut(s) 499, 692, 705, 877
SseBI AGGCCT 1 cut(s) 857
SstI GAGCTC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 4 cut(s) 123, 132, 316, 317
StyI CCWWGG 2 cut(s) 92, 396
TaaI ACNGT 5 cut(s) 112, 202, 293, 479, 629
TaiI ACGT 1 cut(s) 781
TaqI TCGA 5 cut(s) 173, 211, 323, 345, 611
TaqII GACCGA 1 cut(s) 37
TasI AATT 4 cut(s) 499, 692, 705, 877
TauI GCSGC 3 cut(s) 219, 599, 664
TfiI GAWTC 1 cut(s) 814
TscAI CASTG 2 cut(s) 260, 303
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 206, 445, 599
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 718, 748, 776
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 1 cut(s) 317
TspRI CASTG 2 cut(s) 260, 303
VpaK11BI GGWCC 3 cut(s) 49, 161, 371
XapI RAATTY 1 cut(s) 499
XmaI CCCGGG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.