FvH4_2g18920
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016170
Physical Location & Seq
Reverse (-)
16105162 .. 16107167
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18920.t1

Sequence Viewer

Length: 840 bp
ATGGCCGCTCCACCCTCACCCGCCGCCTCGCCCTCCGCCTCCCCAATCTTCATCCGGAAGCCCCAACCCGTCCCCTGGACCCACGAAGAGACCGTCCACCTGATCCAGGCCTACCAGGAAAAATGGTACGAGCTCCGACGAGGCCAGCTCAAGGCCTCCCAATGGGAGGAGGTCGCCGTCACCGTCGCCGCTCGCTGCGGCTACGACTACACCGAGCAATCCAAGACGGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCTCCGTCAAGAAGCGCCTCGGCCGCAGCTTCGGGTCGGGTTGGCCCTACTTCGACCTCATGGAGCGGCTCGAACAGGGCCCCATGCCCATCTCCTCCAGGCGCCCCTACCAGGAATCCGACGAAGAAGAAGAAGTGGAGGAGGAGCATGATGTCGGCGGCGGAGACGAAGTTGATGAGGAGGAAGAAGACAACTACCGGAAGTTACAGAGTCTTGATTACATTCTGAGGAGGCCTGCGATTGTGAACAGATTTTCGTCCAGGGCGACGAGAGAGGGGCAGTTTCGGAACTCGGCGGGGTCGAAAAGAGCGAGGGAGGCGGCAGGCGATGAAGGCTACTACGGTGATGTGGTGGACGGGCAGAGAGGAACAGAGATGGTGGCGGAGCTGGCGACGGAGATAAGGGCATTTGCCAAGAGGCTTATTGGGGTGGAGAACATGAGGATGGAGATCATGAGGGAGACAGAGAGGTGTAGATTAGAGATGGAGAATAGGCGGATTGATATGATTCGTCAATCGCAGCGCAAAATCGTCGATTCCATTGACAGGGCGTTCGCTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

280

Amino Acids

32.39

Weight (kDa)

5.92

Isoelectric Point (pI)

71.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 25 - 115 5.8e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 250
AccBSI CCGCTC 4 cut(s) 8, 191, 276, 340
AccIII TCCGGA 1 cut(s) 54
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 3 cut(s) 3, 228, 295
AcyI GRCGYC 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 8 cut(s) 75, 106, 151, 162, 166, 250, 385, 819
AjnI CCWGG 6 cut(s) 74, 105, 114, 371, 384, 533
AluBI AGCT 5 cut(s) 133, 148, 259, 303, 661
AluI AGCT 5 cut(s) 133, 148, 259, 303, 661
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 83, 432, 728
AlwI GGATC 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 54
AoxI GGCC 9 cut(s) 3, 108, 142, 153, 228, 295, 317, 352, 506
ApaI GGGCCC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 195, 300, 793
ArsI GACNNNNNNTTYG 3 cut(s) 78, 110, 809
AspLEI GCGC 4 cut(s) 270, 291, 378, 798
AspS9I GGNCC 4 cut(s) 78, 318, 352, 353
AsuHPI GGTGA 3 cut(s) 9, 172, 629
AvaII GGWCC 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 375
BanII GRGCYC 2 cut(s) 135, 356
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 182, 312, 805
BccI CCATC 5 cut(s) 244, 371, 643, 712, 751
BceAI ACGGC 2 cut(s) 161, 243
BcgI CGANNNNNNTGC 2 cut(s) 787, 821
BciT130I CCWGG 6 cut(s) 76, 107, 116, 373, 386, 535
BcoDI GTCTC 3 cut(s) 83, 432, 728
BfoI RGCGCY 3 cut(s) 271, 292, 379
Bme1390I CCNGG 6 cut(s) 76, 107, 116, 373, 386, 535
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 4 cut(s) 78, 318, 352, 353
BmiI GGNNCC 4 cut(s) 80, 354, 355, 377
BmrFI CCNGG 6 cut(s) 76, 107, 116, 373, 386, 535
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 74, 292, 534
BsaWI WCCGGW 2 cut(s) 54, 471
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 8 cut(s) 75, 106, 151, 162, 166, 250, 385, 819
Bse1I ACTGG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 722
BseAI TCCGGA 1 cut(s) 54
BseBI CCWGG 6 cut(s) 76, 107, 116, 373, 386, 535
BseDI CCNNGG 3 cut(s) 74, 292, 534
BseGI GGATG 2 cut(s) 51, 723
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 8 cut(s) 75, 106, 151, 162, 166, 250, 385, 819
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 6 cut(s) 182, 358, 428, 431, 467, 517
BseSI GKGCMC 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 182, 312, 805
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 9 cut(s) 5, 110, 144, 155, 230, 297, 319, 354, 508
BshNI GGYRCC 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 2 cut(s) 55, 472
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 8 cut(s) 75, 106, 151, 162, 166, 250, 385, 819
BsmAI GTCTC 3 cut(s) 83, 432, 728
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 9 cut(s) 5, 110, 144, 155, 230, 297, 319, 354, 508
Bso31I GGTCTC 1 cut(s) 83
Bsp120I GGGCCC 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 135, 356
Bsp13I TCCGGA 1 cut(s) 54
Bsp143I GATC 2 cut(s) 102, 723
BspANI GGCC 9 cut(s) 5, 110, 144, 155, 230, 297, 319, 354, 508
BspCNI CTCAG 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 54
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 80, 354, 355, 377
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 4 cut(s) 8, 191, 276, 340
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 74, 292, 534
BssMI GATC 2 cut(s) 102, 723
BssNI GRCGYC 1 cut(s) 376
Bst2UI CCWGG 6 cut(s) 76, 107, 116, 373, 386, 535
Bst4CI ACNGT 3 cut(s) 94, 184, 617
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 1 cut(s) 376
BstC8I GCNNGC 6 cut(s) 146, 193, 266, 510, 598, 663
BstDEI CTNAG 1 cut(s) 500
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 51, 723
BstH2I RGCGCY 3 cut(s) 271, 292, 379
BstHHI GCGC 4 cut(s) 270, 291, 378, 798
BstKTI GATC 2 cut(s) 105, 726
BstMAI GTCTC 3 cut(s) 83, 432, 728
BstMBI GATC 2 cut(s) 102, 723
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 5 cut(s) 265, 297, 590, 606, 662
BstNI CCWGG 6 cut(s) 76, 107, 116, 373, 386, 535
BstSCI CCNGG 6 cut(s) 74, 105, 114, 371, 384, 533
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 182, 312, 805
BstV2I GAAGAC 1 cut(s) 468
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 9 cut(s) 5, 110, 144, 155, 230, 297, 319, 354, 508
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 51, 723
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 6 cut(s) 146, 193, 266, 510, 598, 663
CciI TCATGA 1 cut(s) 726
CfoI GCGC 4 cut(s) 270, 291, 378, 798
Cfr13I GGNCC 4 cut(s) 78, 318, 352, 353
Csp6I GTAC 1 cut(s) 127
CviAII CATG 5 cut(s) 334, 358, 422, 712, 727
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 500
DinI GGCGCC 1 cut(s) 377
DpnI GATC 2 cut(s) 104, 725
DpnII GATC 2 cut(s) 102, 723
DraIII CACNNNGTG 1 cut(s) 237
EaeI YGGCCR 3 cut(s) 3, 228, 295
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 5 cut(s) 25, 251, 450, 671, 784
Ecl136II GAGCTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 295
Eco147I AGGCCT 3 cut(s) 110, 155, 508
Eco24I GRGCYC 2 cut(s) 135, 356
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 352, 353
EcoRII CCWGG 6 cut(s) 74, 105, 114, 371, 384, 533
EcoT38I GRGCYC 2 cut(s) 135, 356
EgeI GGCGCC 1 cut(s) 377
EheI GGCGCC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 5 cut(s) 337, 361, 425, 715, 730
FaiI YATR 6 cut(s) 335, 359, 423, 713, 728, 779
FaqI GGGAC 1 cut(s) 56
FatI CATG 5 cut(s) 333, 357, 421, 711, 726
FauI CCCGC 2 cut(s) 28, 562
FokI GGATG 2 cut(s) 38, 730
FriOI GRGCYC 2 cut(s) 135, 356
GlaI GCGC 4 cut(s) 269, 290, 377, 797
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 3 cut(s) 271, 292, 379
HaeIII GGCC 9 cut(s) 5, 110, 144, 155, 230, 297, 319, 354, 508
HapII CCGG 2 cut(s) 55, 472
HhaI GCGC 4 cut(s) 270, 291, 378, 798
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 5 cut(s) 337, 361, 425, 715, 730
Hin6I GCGC 4 cut(s) 268, 289, 376, 796
HinP1I GCGC 4 cut(s) 268, 289, 376, 796
HinfI GANTC 4 cut(s) 389, 484, 781, 809
HpaII CCGG 2 cut(s) 55, 472
HphI GGTGA 3 cut(s) 9, 172, 629
Hpy166II GTNNAC 3 cut(s) 97, 520, 628
Hpy188I TCNGA 4 cut(s) 137, 394, 501, 561
Hpy188III TCNNGA 5 cut(s) 55, 283, 488, 727, 833
Hpy8I GTNNAC 3 cut(s) 97, 520, 628
Hpy99I CGWCG 6 cut(s) 141, 188, 398, 544, 670, 809
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 3 cut(s) 94, 184, 617
HpyF10VI GCNNNNNNNGC 5 cut(s) 265, 297, 590, 606, 662
HpyF3I CTNAG 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 5 cut(s) 337, 361, 425, 715, 730
HspAI GCGC 4 cut(s) 268, 289, 376, 796
KasI GGCGCC 1 cut(s) 375
Kpn2I TCCGGA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 102, 723
LmnI GCTCC 7 cut(s) 13, 138, 264, 281, 337, 418, 658
Lsp1109I GCAGC 3 cut(s) 182, 312, 805
MaeIII GTNAC 2 cut(s) 178, 477
MalI GATC 2 cut(s) 104, 725
MbiI CCGCTC 4 cut(s) 8, 191, 276, 340
MboI GATC 2 cut(s) 102, 723
MboII GAAGA 7 cut(s) 40, 98, 410, 413, 416, 470, 473
MhlI GDGCHC 2 cut(s) 135, 356
Mly113I GGCGCC 1 cut(s) 376
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 2 cut(s) 160, 417
MroI TCCGGA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 2 cut(s) 55, 472
MspR9I CCNGG 6 cut(s) 76, 107, 116, 373, 386, 535
MvaI CCWGG 6 cut(s) 76, 107, 116, 373, 386, 535
MwoI GCNNNNNNNGC 5 cut(s) 265, 297, 590, 606, 662
NarI GGCGCC 1 cut(s) 376
NdeII GATC 2 cut(s) 102, 723
NlaIII CATG 5 cut(s) 337, 361, 425, 715, 730
NlaIV GGNNCC 4 cut(s) 80, 354, 355, 377
NmeAIII GCCGAG 2 cut(s) 273, 545
NmuCI GTSAC 1 cut(s) 178
PagI TCATGA 1 cut(s) 726
PceI AGGCCT 3 cut(s) 110, 155, 508
PcsI WCGNNNNNNNCGW 6 cut(s) 90, 180, 210, 536, 572, 581
PfeI GAWTC 3 cut(s) 389, 781, 809
PflMI CCANNNNNTGG 1 cut(s) 250
PleI GAGTC 1 cut(s) 492
PluTI GGCGCC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 6 cut(s) 74, 105, 114, 371, 384, 533
PspGI CCWGG 6 cut(s) 74, 105, 114, 371, 384, 533
PspN4I GGNNCC 4 cut(s) 80, 354, 355, 377
PspOMI GGGCCC 1 cut(s) 352
PspPI GGNCC 4 cut(s) 78, 318, 352, 353
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 102, 723
Sau96I GGNCC 4 cut(s) 78, 318, 352, 353
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 6 cut(s) 76, 107, 116, 373, 386, 535
SduI GDGCHC 2 cut(s) 135, 356
SetI ASST 9 cut(s) 102, 135, 150, 174, 261, 305, 333, 663, 746
SfoI GGCGCC 1 cut(s) 377
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SseBI AGGCCT 3 cut(s) 110, 155, 508
SspDI GGCGCC 1 cut(s) 375
SstI GAGCTC 1 cut(s) 135
StuI AGGCCT 3 cut(s) 110, 155, 508
StyD4I CCNGG 6 cut(s) 74, 105, 114, 371, 384, 533
TaaI ACNGT 3 cut(s) 94, 184, 617
TaqI TCGA 5 cut(s) 327, 345, 575, 807, 834
TauI GCSGC 9 cut(s) 8, 26, 191, 201, 243, 300, 343, 435, 596
TfiI GAWTC 3 cut(s) 389, 781, 809
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 195, 300, 793
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 40, 618
TspGWI ACGGA 2 cut(s) 268, 683
TspRI CASTG 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.