Rw6G043200
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016767
Physical Location & Seq
Forward (+)
66567655 .. 66568785
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043200.1

Sequence Viewer

Length: 822 bp
ATGGCCAGGACATGCTCGAAATGCGGAAACAAGGGTCACAATTCAACGACTTGCTGGAGCACCACGCAGTACTACTGGACGCAGCAGCTGGATAAGCCAAAAGAAAGAAGATCTGGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAGCTTGATCATCATGACCTTTCTTCATCATCATCATCATCCTCAGTTTCTTTAATTTCAAGGAACGTGATCAAGAGAAAACGTCGGATCATGGACTACTGCAACAGCTGGTCATCATTTTCTCCATACTTGACCAGCTGCTTATCAGGATATCGAGCTAATATAGGTATAAATAGGCACGATCAGATCTCTCGAGTGGGATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGTATTGAAACGCTGGGTAAGGGTGACTGGAGGGGCATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAGGTCGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAAATAGTACCACCGCCAACACTGCAACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAAAGATGCCGAGTTCGTCCCAGCCTTTTCGATGTAAGTAAAGATCAACTTGTCTCACCTCGTCAACTGATTGATATTAACACTGATAATCCCAATACTGAAGCATCTGTTAACAATCCATACGAGTGCTGGCCAGCCGTTCATTATTCGACGCCTCTCCGAATTGATGTTAATTTGAAGAACTCATCATCTCAGAGTGCAGCAGGAGGAGGACTTGACTTAGAACTTAAGCTTGCAGTGAGCATAATGCCGTTGGGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

273

Amino Acids

30.81

Weight (kDa)

9.34

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 114 - 160 1.3e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 504
AclWI GGATC 2 cut(s) 239, 435
AcoI YGGCCR 2 cut(s) 3, 683
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 704
AfaI GTAC 2 cut(s) 71, 499
AfiI CCNNNNNNNGG 1 cut(s) 451
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 6 cut(s) 45, 204, 386, 491, 538, 730
AjnI CCWGG 2 cut(s) 5, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 6 cut(s) 88, 148, 252, 282, 302, 784
AluI AGCT 6 cut(s) 88, 148, 252, 282, 302, 784
Alw21I GWGCWC 2 cut(s) 62, 363
Alw26I GTCTC 2 cut(s) 131, 610
AlwI GGATC 2 cut(s) 239, 435
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 2 cut(s) 3, 683
ApeKI GCWGC 4 cut(s) 82, 85, 282, 752
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AsuHPI GGTGA 3 cut(s) 413, 424, 600
AvaI CYCGRG 1 cut(s) 336
BalI TGGCCA 2 cut(s) 5, 685
Bbv12I GWGCWC 2 cut(s) 62, 363
BbvI GCAGC 4 cut(s) 94, 97, 269, 764
BccI CCATC 2 cut(s) 339, 527
BceAI ACGGC 2 cut(s) 674, 787
BciT130I CCWGG 2 cut(s) 7, 452
BclI TGATCA 2 cut(s) 151, 213
BcoDI GTCTC 2 cut(s) 131, 610
BfrI CTTAAG 1 cut(s) 779
BglII AGATCT 2 cut(s) 110, 330
BisI GCNGC 4 cut(s) 83, 86, 283, 753
BlsI GCNGC 4 cut(s) 84, 87, 284, 754
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 7, 452
BmeT110I CYCGRG 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 7, 452
BmsI GCATC 3 cut(s) 423, 548, 665
BpmI CTGGAG 2 cut(s) 76, 427
BpuEI CTTGAG 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 3 cut(s) 80, 410, 459
BseBI CCWGG 2 cut(s) 7, 452
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 182, 350
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 4 cut(s) 142, 201, 496, 758
BseNI ACTGG 3 cut(s) 80, 410, 459
BseRI GAGGAG 3 cut(s) 368, 371, 774
BseXI GCAGC 4 cut(s) 94, 97, 269, 764
BseYI CCCAGC 2 cut(s) 391, 572
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 2 cut(s) 5, 685
BsiHKAI GWGCWC 2 cut(s) 62, 363
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 2 cut(s) 131, 610
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 2 cut(s) 5, 685
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 62, 363
Bsp143I GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
BspACI CCGC 2 cut(s) 24, 504
BspANI GGCC 2 cut(s) 5, 685
BspCNI CTCAG 4 cut(s) 141, 200, 495, 757
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 2 cut(s) 239, 435
BspTI CTTAAG 1 cut(s) 779
BsrI ACTGG 3 cut(s) 80, 410, 459
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
BssNI GRCGYC 1 cut(s) 704
Bst2UI CCWGG 2 cut(s) 7, 452
BstACI GRCGYC 1 cut(s) 704
BstAFI CTTAAG 1 cut(s) 779
BstC8I GCNNGC 3 cut(s) 683, 687, 786
BstDEI CTNAG 5 cut(s) 128, 187, 482, 744, 772
BstF5I GGATG 2 cut(s) 182, 350
BstKTI GATC 9 cut(s) 113, 154, 216, 234, 328, 333, 443, 598, 817
BstMAI GTCTC 2 cut(s) 131, 610
BstMBI GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
BstMWI GCNNNNNNNGC 4 cut(s) 21, 94, 464, 512
BstNI CCWGG 2 cut(s) 7, 452
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 5, 450
BstV1I GCAGC 4 cut(s) 94, 97, 269, 764
BstX2I RGATCY 3 cut(s) 110, 330, 440
BstYI RGATCY 3 cut(s) 110, 330, 440
BsuRI GGCC 2 cut(s) 5, 685
BtsCI GGATG 2 cut(s) 182, 350
BtsI GCAGTG 2 cut(s) 510, 795
BtsIMutI CAGTG 3 cut(s) 510, 633, 795
Cac8I GCNNGC 3 cut(s) 683, 687, 786
CaiI CAGNNNCTG 1 cut(s) 88
CciI TCATGA 1 cut(s) 157
CseI GACGC 2 cut(s) 88, 712
Csp6I GTAC 2 cut(s) 70, 498
CviAII CATG 4 cut(s) 12, 158, 235, 464
CviQI GTAC 2 cut(s) 70, 498
DdeI CTNAG 5 cut(s) 128, 187, 482, 744, 772
DpnI GATC 9 cut(s) 112, 153, 215, 233, 327, 332, 442, 597, 816
DpnII GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
EaeI YGGCCR 2 cut(s) 3, 683
Eco32I GATATC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 5, 450
EcoRV GATATC 1 cut(s) 296
FaeI CATG 4 cut(s) 15, 161, 238, 467
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 555
FatI CATG 4 cut(s) 11, 157, 234, 463
FbaI TGATCA 2 cut(s) 151, 213
Fnu4HI GCNGC 4 cut(s) 83, 86, 283, 753
FokI GGATG 2 cut(s) 169, 357
Fsp4HI GCNGC 4 cut(s) 83, 86, 283, 753
GluI GCNGC 4 cut(s) 83, 86, 283, 753
GsaI CCCAGC 2 cut(s) 395, 576
GsuI CTGGAG 2 cut(s) 76, 427
HaeIII GGCC 2 cut(s) 5, 685
HapII CCGG 1 cut(s) 364
HgaI GACGC 2 cut(s) 88, 712
Hin1I GRCGYC 1 cut(s) 704
Hin1II CATG 4 cut(s) 15, 161, 238, 467
HincII GTYRAC 2 cut(s) 617, 664
HindII GTYRAC 2 cut(s) 617, 664
HindIII AAGCTT 1 cut(s) 782
HpaI GTTAAC 1 cut(s) 664
HpaII CCGG 1 cut(s) 364
HphI GGTGA 3 cut(s) 413, 424, 600
Hpy166II GTNNAC 2 cut(s) 617, 664
Hpy188I TCNGA 5 cut(s) 231, 330, 485, 713, 747
Hpy188III TCNNGA 5 cut(s) 158, 217, 291, 336, 374
Hpy8I GTNNAC 2 cut(s) 617, 664
Hpy99I CGWCG 2 cut(s) 231, 706
HpyCH4IV ACGT 2 cut(s) 210, 226
HpyCH4V TGCA 4 cut(s) 246, 515, 752, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 94, 464, 512
HpyF3I CTNAG 5 cut(s) 128, 187, 482, 744, 772
HpySE526I ACGT 2 cut(s) 210, 226
Hsp92I GRCGYC 1 cut(s) 704
Hsp92II CATG 4 cut(s) 15, 161, 238, 467
Ksp22I TGATCA 2 cut(s) 151, 213
KspAI GTTAAC 1 cut(s) 664
Kzo9I GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
LmnI GCTCC 2 cut(s) 57, 358
Lsp1109I GCAGC 4 cut(s) 94, 97, 269, 764
LweI GCATC 3 cut(s) 423, 548, 665
MaeII ACGT 2 cut(s) 210, 226
MaeIII GTNAC 3 cut(s) 35, 401, 430
MalI GATC 9 cut(s) 112, 153, 215, 233, 327, 332, 442, 597, 816
MboI GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
MboII GAAGA 3 cut(s) 120, 159, 742
MflI RGATCY 3 cut(s) 110, 330, 440
MhlI GDGCHC 2 cut(s) 62, 363
MlsI TGGCCA 2 cut(s) 5, 685
MluCI AATT 4 cut(s) 40, 198, 714, 724
MluNI TGGCCA 2 cut(s) 5, 685
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 2 cut(s) 5, 685
MscI TGGCCA 2 cut(s) 5, 685
MseI TTAA 5 cut(s) 197, 630, 663, 723, 780
MslI CAYNNNNRTG 1 cut(s) 676
Msp20I TGGCCA 2 cut(s) 5, 685
MspA1I CMGCKG 3 cut(s) 88, 252, 282
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 2 cut(s) 7, 452
MvaI CCWGG 2 cut(s) 7, 452
MwoI GCNNNNNNNGC 4 cut(s) 21, 94, 464, 512
NdeII GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
NlaIII CATG 4 cut(s) 15, 161, 238, 467
NmeAIII GCCGAG 1 cut(s) 587
NmuCI GTSAC 3 cut(s) 35, 401, 430
NspI RCATGY 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 336
PagI TCATGA 1 cut(s) 157
PkrI GCNGC 4 cut(s) 84, 87, 284, 754
Psp6I CCWGG 2 cut(s) 5, 450
PspFI CCCAGC 2 cut(s) 391, 572
PspGI CCWGG 2 cut(s) 5, 450
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 3 cut(s) 110, 330, 440
PvuII CAGCTG 3 cut(s) 88, 252, 282
RsaI GTAC 2 cut(s) 71, 499
RsaNI GTAC 2 cut(s) 70, 498
RseI CAYNNNNRTG 1 cut(s) 676
SaqAI TTAA 5 cut(s) 197, 630, 663, 723, 780
SatI GCNGC 4 cut(s) 83, 86, 283, 753
Sau3AI GATC 9 cut(s) 110, 151, 213, 231, 325, 330, 440, 595, 814
ScaI AGTACT 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 7, 452
SduI GDGCHC 2 cut(s) 62, 363
SfaNI GCATC 3 cut(s) 423, 548, 665
Sfr274I CTCGAG 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 3 cut(s) 336, 374, 779
SmoI CTYRAG 3 cut(s) 336, 374, 779
Sse9I AATT 4 cut(s) 40, 198, 714, 724
SsiI CCGC 2 cut(s) 24, 504
SspI AATATT 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 5, 450
TaiI ACGT 2 cut(s) 213, 229
TaqI TCGA 7 cut(s) 17, 298, 337, 531, 543, 582, 701
TasI AATT 4 cut(s) 40, 198, 714, 724
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 5 cut(s) 197, 630, 663, 723, 780
Tru9I TTAA 5 cut(s) 197, 630, 663, 723, 780
TscAI CASTG 3 cut(s) 517, 640, 795
TseFI GTSAC 3 cut(s) 35, 401, 430
TseI GCWGC 4 cut(s) 82, 85, 282, 752
Tsp45I GTSAC 3 cut(s) 35, 401, 430
TspDTI ATGAA 2 cut(s) 159, 683
TspRI CASTG 3 cut(s) 517, 640, 795
Vha464I CTTAAG 1 cut(s) 779
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 678
XhoI CTCGAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.