FvH4_2g32022
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016767
Physical Location & Seq
Reverse (-)
24396883 .. 24397975
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32022.t1

Sequence Viewer

Length: 837 bp
ATGACGAGGACATGCTCGAAATGTGGAAACAAGGGTCACAATTCAAGGACTTGCTGGAGCACCACGCACTGCTACTGGATGCAGCAGATGAATAAGCCGTTTGAAAGAAGATATGGTAATAACAGTACTCTCAGGTTGTTTGGTGTTCAGCTTGATCGACATGATCTCTCTTCTTCCCCCTCATCCTCATTATCTGCAACTTCAACGAAAGTGATCAAGCGTCAACGTTGGAGGAAGGACTACTACAACAGCTTGGCATCATCTTCTCCACACTTCACCAGCTTCTTATCAGGATATCAAGCTAATAAGTGTACAAATAGGCACGATCAGATCTCTCGTGCCGATAATGGCGGCCTTCAAGAAACAAATTACAACAAGAGAATGGCATGGAGTTTGGAGGAGCATTGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAAGGGTGACCGGAGGGGAATCTCTAAACACTATGTCACCACAAGATCACCAACCCAGATCTCCAGTCATGCCCAAAAATACTTTCTCAGACTACAAAATAACATCACCACCAACGCTACTGCAACCATCGACAACCTCCACAAGAAAAGACGCCGTGGTCGTCCACCCCTTTTCGATGTCGGCGAAGATAAACTTGTCTCACCTCGTCAACAAATTGGTATTATCGCTAATAATCCCAACACTGAAGTATCTGTTAACAATCCATATGAGTGCTGGCCAGCCGTTCATAATTCGAGGCCTCTCCTAAGTGAAACTAATTTGAAGAACGTCTCATCATCTCAGAGTGCAGCAGCAGAAGGAGATGGACTTGACTTAGAACTTAAGCTTGCAACAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.57

Weight (kDa)

9.81

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 127 - 174 1.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 594
AciI CCGC 1 cut(s) 351
AclI AACGTT 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 2 cut(s) 127, 313
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 6 cut(s) 45, 104, 204, 359, 428, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 6 cut(s) 151, 252, 282, 302, 433, 823
AluI AGCT 6 cut(s) 151, 252, 282, 302, 433, 823
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 640, 772
AoxI GGCC 3 cut(s) 352, 713, 734
ApeKI GCWGC 3 cut(s) 82, 785, 788
AsuHPI GGTGA 6 cut(s) 268, 455, 466, 477, 535, 630
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
BalI TGGCCA 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 94, 797, 800
BccI CCATC 2 cut(s) 572, 794
BceAI ACGGC 3 cut(s) 82, 576, 704
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 640, 772
BfaI CTAG 1 cut(s) 835
BfrI CTTAAG 1 cut(s) 818
BglII AGATCT 2 cut(s) 330, 495
BisI GCNGC 4 cut(s) 83, 352, 786, 789
BlsI GCNGC 4 cut(s) 84, 353, 787, 790
BmcAI AGTACT 1 cut(s) 127
BmsI GCATC 2 cut(s) 69, 266
BpmI CTGGAG 2 cut(s) 76, 484
BpuEI CTTGAG 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 592
BsaWI WCCGGW 1 cut(s) 447
Bse1I ACTGG 2 cut(s) 80, 501
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 2 cut(s) 84, 182
BseMII CTCAG 3 cut(s) 145, 538, 791
BseNI ACTGG 2 cut(s) 80, 501
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 94, 797, 800
BseYI CCCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 3 cut(s) 354, 715, 736
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 448
BsmAI GTCTC 2 cut(s) 640, 772
BsmBI CGTCTC 1 cut(s) 772
BsnI GGCC 3 cut(s) 354, 715, 736
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
BspACI CCGC 1 cut(s) 351
BspANI GGCC 3 cut(s) 354, 715, 736
BspCNI CTCAG 3 cut(s) 144, 537, 790
BspTI CTTAAG 1 cut(s) 818
BsrGI TGTACA 1 cut(s) 311
BsrI ACTGG 2 cut(s) 80, 501
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 589
BstAFI CTTAAG 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 713, 717, 825
BstDEI CTNAG 5 cut(s) 131, 524, 743, 777, 811
BstDSI CCRYGG 1 cut(s) 592
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 2 cut(s) 84, 182
BstKTI GATC 7 cut(s) 157, 166, 216, 328, 333, 485, 498
BstMAI GTCTC 2 cut(s) 640, 772
BstMBI GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
BstNSI RCATGY 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 94, 797, 800
BstX2I RGATCY 2 cut(s) 330, 495
BstYI RGATCY 2 cut(s) 330, 495
BsuRI GGCC 3 cut(s) 354, 715, 736
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 2 cut(s) 84, 182
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 678
Cac8I GCNNGC 3 cut(s) 713, 717, 825
CseI GACGC 2 cut(s) 209, 597
Csp6I GTAC 2 cut(s) 126, 312
CviAII CATG 4 cut(s) 12, 161, 387, 506
CviQI GTAC 2 cut(s) 126, 312
DdeI CTNAG 5 cut(s) 131, 524, 743, 777, 811
DpnI GATC 7 cut(s) 156, 165, 215, 327, 332, 484, 497
DpnII GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
DrdI GACNNNNNNGTC 1 cut(s) 594
DseDI GACNNNNNNGTC 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 736
Eco32I GATATC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 702
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoRV GATATC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 4 cut(s) 15, 164, 390, 509
FaiI YATR 9 cut(s) 13, 114, 162, 388, 471, 507, 703, 705, 726
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 4 cut(s) 11, 160, 386, 505
FauNDI CATATG 1 cut(s) 703
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 83, 352, 786, 789
FokI GGATG 2 cut(s) 91, 169
Fsp4HI GCNGC 4 cut(s) 83, 352, 786, 789
FspBI CTAG 1 cut(s) 835
GluI GCNGC 4 cut(s) 83, 352, 786, 789
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 2 cut(s) 76, 484
HaeIII GGCC 3 cut(s) 354, 715, 736
HapII CCGG 1 cut(s) 448
HgaI GACGC 2 cut(s) 209, 597
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 4 cut(s) 15, 164, 390, 509
HincII GTYRAC 3 cut(s) 224, 647, 694
HindII GTYRAC 3 cut(s) 224, 647, 694
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 1 cut(s) 456
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 1 cut(s) 448
HphI GGTGA 6 cut(s) 268, 455, 466, 477, 535, 630
Hpy166II GTNNAC 5 cut(s) 224, 312, 602, 647, 694
Hpy188I TCNGA 3 cut(s) 330, 527, 780
Hpy188III TCNNGA 3 cut(s) 291, 359, 416
Hpy8I GTNNAC 5 cut(s) 224, 312, 602, 647, 694
HpyAV CCTTC 3 cut(s) 229, 365, 788
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 226, 765
HpyCH4V TGCA 5 cut(s) 82, 197, 560, 785, 827
HpyF3I CTNAG 5 cut(s) 131, 524, 743, 777, 811
HpySE526I ACGT 2 cut(s) 226, 765
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 4 cut(s) 15, 164, 390, 509
Ksp22I TGATCA 1 cut(s) 213
KspAI GTTAAC 1 cut(s) 694
Kzo9I GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
LmnI GCTCC 2 cut(s) 57, 400
Lsp1109I GCAGC 3 cut(s) 94, 797, 800
LweI GCATC 2 cut(s) 69, 266
MaeI CTAG 1 cut(s) 835
MaeII ACGT 2 cut(s) 226, 765
MaeIII GTNAC 3 cut(s) 35, 443, 472
MalI GATC 7 cut(s) 156, 165, 215, 327, 332, 484, 497
MboI GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
MboII GAAGA 6 cut(s) 120, 162, 165, 255, 635, 772
MflI RGATCY 2 cut(s) 330, 495
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 715
MluCI AATT 5 cut(s) 40, 367, 651, 727, 754
MluNI TGGCCA 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 715
MscI TGGCCA 1 cut(s) 715
MseI TTAA 2 cut(s) 693, 819
MslI CAYNNNNRTG 1 cut(s) 706
Msp20I TGGCCA 1 cut(s) 715
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 703
NdeII GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
NlaIII CATG 4 cut(s) 15, 164, 390, 509
NmuCI GTSAC 3 cut(s) 35, 443, 472
NspI RCATGY 1 cut(s) 15
PceI AGGCCT 1 cut(s) 736
PcsI WCGNNNNNNNCGW 2 cut(s) 595, 618
PfeI GAWTC 1 cut(s) 456
PkrI GCNGC 4 cut(s) 84, 353, 787, 790
Psp1406I AACGTT 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 433
PsuI RGATCY 2 cut(s) 330, 495
RsaI GTAC 2 cut(s) 127, 313
RsaNI GTAC 2 cut(s) 126, 312
RseI CAYNNNNRTG 1 cut(s) 706
SaqAI TTAA 2 cut(s) 693, 819
SatI GCNGC 4 cut(s) 83, 352, 786, 789
Sau3AI GATC 7 cut(s) 154, 163, 213, 325, 330, 482, 495
ScaI AGTACT 1 cut(s) 127
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 2 cut(s) 69, 266
SmiMI CAYNNNNRTG 1 cut(s) 706
SmlI CTYRAG 2 cut(s) 416, 818
SmoI CTYRAG 2 cut(s) 416, 818
Sse9I AATT 5 cut(s) 40, 367, 651, 727, 754
SseBI AGGCCT 1 cut(s) 736
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 835
StuI AGGCCT 1 cut(s) 736
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 229, 768
TaqI TCGA 5 cut(s) 17, 157, 567, 612, 731
TasI AATT 5 cut(s) 40, 367, 651, 727, 754
TatI WGTACW 2 cut(s) 125, 311
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 2 cut(s) 693, 819
Tru9I TTAA 2 cut(s) 693, 819
TscAI CASTG 2 cut(s) 74, 685
TseFI GTSAC 3 cut(s) 35, 443, 472
TseI GCWGC 3 cut(s) 82, 785, 788
Tsp45I GTSAC 3 cut(s) 35, 443, 472
TspDTI ATGAA 2 cut(s) 104, 713
TspRI CASTG 2 cut(s) 74, 685
Vha464I CTTAAG 1 cut(s) 818
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 708
XspI CTAG 1 cut(s) 835
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.