Rh5DG256300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016767
Physical Location & Seq
Forward (+)
30175542 .. 30209522
33981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG256300.1

Sequence Viewer

Length: 489 bp
ATGGCGAGGACATGCTCGAAATGCGGGGGCAGGTATCACAATTCAAGAACTTGCTGGAGCACCACGCAGTACTACTGTAGGCAGCAGCTGAATAAGCCGAAAGAAAGAAGAGCTAAGAAAGACAGAAGAGCTAGTAATAGCAGTCTCATGCTCTTTGGGGTTCAACTTGATCACCACGACCTTTCTTTTTCTTCTTCTTCAAGAGTGGCATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTCATGCCCAAAAATATTTTCTCAGATGTCAAAAGAGTACCACCGCAAACACTGCAACCATCAACAACCTCGACTTCAACTTTGACCCCCACAAGAAAAGACGCCGAGGTCGTCCCAGCCTTTTCGATAGAGAAGCAACTAATTTTAGCTGCACAACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

162

Amino Acids

18.9

Weight (kDa)

10.08

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 68 - 115 3.8e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 21
AciI CCGC 2 cut(s) 24, 369
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 2 cut(s) 71, 364
AgsI TTSAA 5 cut(s) 45, 164, 201, 251, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 5 cut(s) 88, 113, 131, 256, 474
AluI AGCT 5 cut(s) 88, 113, 131, 256, 474
Alw21I GWGCWC 2 cut(s) 62, 228
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 82, 85, 474
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuHPI GGTGA 2 cut(s) 164, 278
Bbv12I GWGCWC 2 cut(s) 62, 228
BbvI GCAGC 3 cut(s) 94, 97, 461
BccI CCATC 1 cut(s) 392
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 21
BglII AGATCT 1 cut(s) 305
BisI GCNGC 3 cut(s) 83, 86, 475
BlsI GCNGC 3 cut(s) 84, 87, 476
BmcAI AGTACT 1 cut(s) 71
BmsI GCATC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bse1I ACTGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 233, 236
BseXI GCAGC 3 cut(s) 94, 97, 461
BseYI CCCAGC 2 cut(s) 256, 440
BsgI GTGCAG 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 62, 228
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 62, 228
Bsp143I GATC 3 cut(s) 169, 305, 318
BspACI CCGC 2 cut(s) 24, 369
BspCNI CTCAG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 21
BspQI GCTCTTC 2 cut(s) 103, 121
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 3 cut(s) 169, 305, 318
BssNI GRCGYC 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 103, 121
BstACI GRCGYC 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 114, 347
BstKTI GATC 3 cut(s) 172, 308, 321
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 169, 305, 318
BstMWI GCNNNNNNNGC 4 cut(s) 21, 94, 329, 377
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 94, 97, 461
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 88
CseI GACGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 70, 363
CviAII CATG 4 cut(s) 12, 148, 210, 329
CviJI RGCY 7 cut(s) 88, 97, 113, 131, 256, 444, 474
CviKI_1 RGCY 7 cut(s) 88, 97, 113, 131, 256, 444, 474
CviQI GTAC 2 cut(s) 70, 363
DdeI CTNAG 2 cut(s) 114, 347
DpnI GATC 3 cut(s) 171, 307, 320
DpnII GATC 3 cut(s) 169, 305, 318
DrdI GACNNNNNNGTC 1 cut(s) 432
DseDI GACNNNNNNGTC 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 103, 121
EarI CTCTTC 2 cut(s) 103, 121
FaeI CATG 4 cut(s) 15, 151, 213, 332
FaiI YATR 5 cut(s) 13, 149, 211, 294, 330
FaqI GGGAC 1 cut(s) 423
FatI CATG 4 cut(s) 11, 147, 209, 328
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 83, 86, 475
Fsp4HI GCNGC 3 cut(s) 83, 86, 475
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 83, 86, 475
GsaI CCCAGC 2 cut(s) 260, 444
GsuI CTGGAG 1 cut(s) 76
HapII CCGG 1 cut(s) 229
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 4 cut(s) 15, 151, 213, 332
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 164, 278
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 3 cut(s) 45, 201, 239
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 380, 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 94, 329, 377
HpyF3I CTNAG 2 cut(s) 114, 347
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 4 cut(s) 15, 151, 213, 332
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 169, 305, 318
LguI GCTCTTC 2 cut(s) 103, 121
LmnI GCTCC 2 cut(s) 57, 223
LpnPI CCDG 7 cut(s) 16, 40, 242, 242, 329, 337, 454
Lsp1109I GCAGC 3 cut(s) 94, 97, 461
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 171, 307, 320
MboI GATC 3 cut(s) 169, 305, 318
MboII GAAGA 5 cut(s) 120, 138, 183, 186, 189
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 62, 228
MluCI AATT 2 cut(s) 40, 466
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 6 cut(s) 211, 214, 235, 267, 404, 425
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 21, 94, 329, 377
NdeII GATC 3 cut(s) 169, 305, 318
NlaIII CATG 4 cut(s) 15, 151, 213, 332
NmeAIII GCCGAG 1 cut(s) 455
NspI RCATGY 1 cut(s) 15
PciSI GCTCTTC 2 cut(s) 103, 121
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PkrI GCNGC 3 cut(s) 84, 87, 476
PspFI CCCAGC 2 cut(s) 256, 440
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 71, 364
RsaNI GTAC 2 cut(s) 70, 363
SapI GCTCTTC 2 cut(s) 103, 121
SatI GCNGC 3 cut(s) 83, 86, 475
Sau3AI GATC 3 cut(s) 169, 305, 318
ScaI AGTACT 1 cut(s) 71
SduI GDGCHC 2 cut(s) 62, 228
SetI ASST 9 cut(s) 35, 90, 115, 133, 183, 258, 396, 436, 476
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 40, 466
SsiI CCGC 2 cut(s) 24, 369
SspI AATATT 1 cut(s) 341
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 17, 396, 450
TasI AATT 2 cut(s) 40, 466
TatI WGTACW 1 cut(s) 69
TscAI CASTG 1 cut(s) 382
TseI GCWGC 3 cut(s) 82, 85, 474
TspRI CASTG 1 cut(s) 382
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.