Rw5G022700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016767
Physical Location & Seq
Forward (+)
31630000 .. 31630918
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022700.1

Sequence Viewer

Length: 684 bp
ATGGCGAGGACATGCTCGAAATGCGGGGGCAGGGATCACAATTCAAGAACTTGCTGGAGCACCACGCAGTACTACTGTAGGCAGCAGCTGAATAAGCCGAAAGAAAGAAGAGCTAAGAAAGACAGAAGAGCTAGTAATAGCAGTCTCATGCTCTTTGGGGTTCAACTTGATCACCACGACCTTTCTTTTTCTTCTTCTTCAAGAGTGGCATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTCATGCCCAAAAATATTTTCTCAGATGTCAAAATAGTACCACCGCAAACACTGCAACCATCAACAACCTCGAATTCAACTTTGACCCCCACAAGAAAAGACGCCGAGGTCGTCCCAGCCTTTTCGATGTCAGTAACGATCAACTTGCCTCACCTCGTCAACTGATTGATATTAACAGTAATAATCCCAATACTCAAGCAGCATCTATTAAATATGAGTACTGCTGGCCAGCCGTTCATTATTCCACGCCTCTCAGTTCGAAGAACTCATCATCTCAGAGTGCAGCAGCTGCAGCAGCAGGACTTGACTTAGAACTTAAGCTTGCAGCAAGCATAATGCCGTTGGGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

227

Amino Acids

25.63

Weight (kDa)

9.69

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 68 - 115 7e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 432
AciI CCGC 2 cut(s) 24, 369
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 3 cut(s) 71, 364, 545
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 5 cut(s) 45, 164, 201, 251, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 6 cut(s) 88, 113, 131, 256, 614, 646
AluI AGCT 6 cut(s) 88, 113, 131, 256, 614, 646
Alw21I GWGCWC 2 cut(s) 62, 228
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 42
AlwNI CAGNNNCTG 2 cut(s) 88, 614
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 9 cut(s) 82, 85, 524, 608, 611, 614, 617, 620, 650
ApoI RAATTY 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 164, 278, 468
AsuII TTCGAA 1 cut(s) 584
BalI TGGCCA 1 cut(s) 553
Bbv12I GWGCWC 2 cut(s) 62, 228
BbvI GCAGC 9 cut(s) 94, 97, 536, 601, 620, 623, 629, 632, 662
BccI CCATC 1 cut(s) 392
BceAI ACGGC 2 cut(s) 542, 649
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 76, 615
BfrI CTTAAG 1 cut(s) 641
BglII AGATCT 1 cut(s) 305
BisI GCNGC 9 cut(s) 83, 86, 525, 609, 612, 615, 618, 621, 651
BlsI GCNGC 9 cut(s) 84, 87, 526, 610, 613, 616, 619, 622, 652
BmcAI AGTACT 2 cut(s) 71, 545
BmsI GCATC 2 cut(s) 288, 536
BpmI CTGGAG 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 260, 504
BsaHI GRCGYC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bse1I ACTGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 361, 592, 614
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 233, 236
BseXI GCAGC 9 cut(s) 94, 97, 536, 601, 620, 623, 629, 632, 662
BseYI CCCAGC 2 cut(s) 256, 440
BsgI GTGCAG 1 cut(s) 627
BshFI GGCC 1 cut(s) 553
BsiHKAI GWGCWC 2 cut(s) 62, 228
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 62, 228
Bsp143I GATC 6 cut(s) 34, 169, 305, 318, 463, 676
BspACI CCGC 2 cut(s) 24, 369
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 3 cut(s) 360, 591, 613
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 2 cut(s) 103, 121
BspT104I TTCGAA 1 cut(s) 584
BspTI CTTAAG 1 cut(s) 641
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 6 cut(s) 34, 169, 305, 318, 463, 676
BssNI GRCGYC 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 77, 503
Bst6I CTCTTC 2 cut(s) 103, 121
BstACI GRCGYC 1 cut(s) 427
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 2 cut(s) 377, 614
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 4 cut(s) 551, 555, 648, 655
BstDEI CTNAG 5 cut(s) 114, 347, 578, 600, 634
BstKTI GATC 6 cut(s) 37, 172, 308, 321, 466, 679
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 6 cut(s) 34, 169, 305, 318, 463, 676
BstMWI GCNNNNNNNGC 7 cut(s) 21, 94, 329, 377, 614, 617, 620
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 2 cut(s) 76, 615
BstV1I GCAGC 9 cut(s) 94, 97, 536, 601, 620, 623, 629, 632, 662
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 4 cut(s) 551, 555, 648, 655
CaiI CAGNNNCTG 2 cut(s) 88, 614
CseI GACGC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 70, 363, 544
CviAII CATG 4 cut(s) 12, 148, 210, 329
CviQI GTAC 3 cut(s) 70, 363, 544
DdeI CTNAG 5 cut(s) 114, 347, 578, 600, 634
DpnI GATC 6 cut(s) 36, 171, 307, 320, 465, 678
DpnII GATC 6 cut(s) 34, 169, 305, 318, 463, 676
DrdI GACNNNNNNGTC 1 cut(s) 432
DseDI GACNNNNNNGTC 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 2 cut(s) 103, 121
EarI CTCTTC 2 cut(s) 103, 121
EcoRI GAATTC 1 cut(s) 398
FaeI CATG 4 cut(s) 15, 151, 213, 332
FaiI YATR 7 cut(s) 13, 149, 211, 294, 330, 540, 659
FaqI GGGAC 1 cut(s) 423
FatI CATG 4 cut(s) 11, 147, 209, 328
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 9 cut(s) 83, 86, 525, 609, 612, 615, 618, 621, 651
Fsp4HI GCNGC 9 cut(s) 83, 86, 525, 609, 612, 615, 618, 621, 651
FspBI CTAG 1 cut(s) 132
GluI GCNGC 9 cut(s) 83, 86, 525, 609, 612, 615, 618, 621, 651
GsaI CCCAGC 2 cut(s) 260, 444
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 553
HapII CCGG 1 cut(s) 229
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 4 cut(s) 15, 151, 213, 332
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 644
HpaII CCGG 1 cut(s) 229
HphI GGTGA 3 cut(s) 164, 278, 468
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 2 cut(s) 350, 603
Hpy188III TCNNGA 3 cut(s) 45, 201, 239
Hpy8I GTNNAC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 77, 503
HpyCH4V TGCA 4 cut(s) 380, 608, 617, 650
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 94, 329, 377, 614, 617, 620
HpyF3I CTNAG 5 cut(s) 114, 347, 578, 600, 634
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 4 cut(s) 15, 151, 213, 332
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 34, 169, 305, 318, 463, 676
LguI GCTCTTC 2 cut(s) 103, 121
LmnI GCTCC 2 cut(s) 57, 223
Lsp1109I GCAGC 9 cut(s) 94, 97, 536, 601, 620, 623, 629, 632, 662
LweI GCATC 2 cut(s) 288, 536
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 295, 458
MalI GATC 6 cut(s) 36, 171, 307, 320, 465, 678
MboI GATC 6 cut(s) 34, 169, 305, 318, 463, 676
MboII GAAGA 6 cut(s) 120, 138, 183, 186, 189, 598
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 62, 228
MlsI TGGCCA 1 cut(s) 553
MluCI AATT 2 cut(s) 40, 398
MluNI TGGCCA 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 9 cut(s) 211, 214, 235, 267, 404, 425, 484, 489, 585
Mox20I TGGCCA 1 cut(s) 553
MscI TGGCCA 1 cut(s) 553
MseI TTAA 3 cut(s) 498, 534, 642
Msp20I TGGCCA 1 cut(s) 553
MspA1I CMGCKG 2 cut(s) 88, 614
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 7 cut(s) 21, 94, 329, 377, 614, 617, 620
NdeII GATC 6 cut(s) 34, 169, 305, 318, 463, 676
NlaIII CATG 4 cut(s) 15, 151, 213, 332
NmeAIII GCCGAG 1 cut(s) 455
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 584
PciSI GCTCTTC 2 cut(s) 103, 121
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PkrI GCNGC 9 cut(s) 84, 87, 526, 610, 613, 616, 619, 622, 652
PspFI CCCAGC 2 cut(s) 256, 440
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 2 cut(s) 88, 614
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 2 cut(s) 88, 614
RsaI GTAC 3 cut(s) 71, 364, 545
RsaNI GTAC 3 cut(s) 70, 363, 544
SapI GCTCTTC 2 cut(s) 103, 121
SaqAI TTAA 3 cut(s) 498, 534, 642
SatI GCNGC 9 cut(s) 83, 86, 525, 609, 612, 615, 618, 621, 651
Sau3AI GATC 6 cut(s) 34, 169, 305, 318, 463, 676
ScaI AGTACT 2 cut(s) 71, 545
SduI GDGCHC 2 cut(s) 62, 228
SfaNI GCATC 2 cut(s) 288, 536
SfcI CTRYAG 2 cut(s) 76, 615
SfuI TTCGAA 1 cut(s) 584
SmlI CTYRAG 3 cut(s) 239, 519, 641
SmoI CTYRAG 3 cut(s) 239, 519, 641
Sse9I AATT 2 cut(s) 40, 398
SsiI CCGC 2 cut(s) 24, 369
SspI AATATT 1 cut(s) 341
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 77, 503
TaqI TCGA 4 cut(s) 17, 396, 450, 584
TasI AATT 2 cut(s) 40, 398
TatI WGTACW 2 cut(s) 69, 543
Tru1I TTAA 3 cut(s) 498, 534, 642
Tru9I TTAA 3 cut(s) 498, 534, 642
TscAI CASTG 1 cut(s) 382
TseI GCWGC 9 cut(s) 82, 85, 524, 608, 611, 614, 617, 620, 650
TspDTI ATGAA 1 cut(s) 551
TspRI CASTG 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 641
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 2 cut(s) 71, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.