Rh5AG247600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016767
Physical Location & Seq
Forward (+)
30673039 .. 30676297
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG247600.1

Sequence Viewer

Length: 507 bp
ATGGCGAGGACATGCTCGAAATGCGGGGGTAGGGATCACAATTCAAGAACTTGCTGGAGCACCACGCAGTACTACTGGATGCAGCAGCTGAATAAGCCGAAAAAAAGAAGAGCTAGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAACTTGATCACCACGATCTTTCTTCTTCTTCAAGAGTGGCATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTCATGCCCAAAAATATTTTCTCAGATGTCAAAATAGTACCACCACAAACACTGCAACCATCAACAACCTCGACTTCAACTTTGACCCCCACAAGAAAAGACGCCGAGGTCGTTCCAGCCTTTTCGATCGTCCGGGTGTTGAGGATCAGGATCTGAGTGAGGCGGCGTCTGTCTGCGGTGGGCTTCCGGGTTCTCTGCGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

168

Amino Acids

19.28

Weight (kDa)

10.03

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 60 - 107 4.1e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 408
AciI CCGC 5 cut(s) 24, 464, 477, 499, 502
AclWI GGATC 3 cut(s) 42, 453, 459
AcyI GRCGYC 2 cut(s) 403, 467
AfaI GTAC 2 cut(s) 71, 340
AgsI TTSAA 5 cut(s) 45, 146, 177, 227, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 3 cut(s) 88, 113, 232
AluI AGCT 3 cut(s) 88, 113, 232
Alw21I GWGCWC 2 cut(s) 62, 204
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 42, 453, 459
AlwNI CAGNNNCTG 2 cut(s) 88, 454
ApeKI GCWGC 2 cut(s) 82, 85
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsuC2I CCSGG 2 cut(s) 435, 489
AsuHPI GGTGA 2 cut(s) 146, 254
Bbv12I GWGCWC 2 cut(s) 62, 204
BbvI GCAGC 2 cut(s) 94, 97
BccI CCATC 1 cut(s) 368
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 2 cut(s) 435, 489
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 281
BisI GCNGC 4 cut(s) 83, 86, 465, 500
BlsI GCNGC 4 cut(s) 84, 87, 466, 501
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 435, 489
BmrFI CCNGG 2 cut(s) 435, 489
BmsI GCATC 2 cut(s) 69, 264
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 435, 489
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 403, 467
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bse1I ACTGG 2 cut(s) 80, 300
Bse8I GATNNNNATC 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 450
BseMII CTCAG 3 cut(s) 142, 337, 446
BseNI ACTGG 2 cut(s) 80, 300
BseRI GAGGAG 2 cut(s) 209, 212
BseXI GCAGC 2 cut(s) 94, 97
BseYI CCCAGC 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 62, 204
BsiSI CCGG 3 cut(s) 205, 434, 488
BsmAI GTCTC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 62, 204
Bsp143I GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
BspACI CCGC 5 cut(s) 24, 464, 477, 499, 502
BspCNI CTCAG 3 cut(s) 141, 336, 447
BspPI GGATC 3 cut(s) 42, 453, 459
BspQI GCTCTTC 1 cut(s) 103
BsrI ACTGG 2 cut(s) 80, 300
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
BssNI GRCGYC 2 cut(s) 403, 467
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 403, 467
BstDEI CTNAG 3 cut(s) 128, 323, 455
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 8 cut(s) 37, 154, 163, 284, 297, 430, 448, 454
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 3 cut(s) 21, 94, 305
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 433, 487
BstV1I GCAGC 2 cut(s) 94, 97
BstX2I RGATCY 2 cut(s) 281, 451
BstYI RGATCY 2 cut(s) 281, 451
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
CaiI CAGNNNCTG 2 cut(s) 88, 454
CseI GACGC 2 cut(s) 411, 456
Csp6I GTAC 2 cut(s) 70, 339
CviAII CATG 3 cut(s) 12, 186, 305
CviJI RGCY 7 cut(s) 88, 97, 113, 133, 232, 420, 484
CviKI_1 RGCY 7 cut(s) 88, 97, 113, 133, 232, 420, 484
CviQI GTAC 2 cut(s) 70, 339
DdeI CTNAG 3 cut(s) 128, 323, 455
DpnI GATC 8 cut(s) 36, 153, 162, 283, 296, 429, 447, 453
DpnII GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
DrdI GACNNNNNNGTC 1 cut(s) 408
DseDI GACNNNNNNGTC 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
FaeI CATG 3 cut(s) 15, 189, 308
FaiI YATR 4 cut(s) 13, 187, 270, 306
FatI CATG 3 cut(s) 11, 185, 304
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 4 cut(s) 83, 86, 465, 500
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 83, 86, 465, 500
FspBI CTAG 1 cut(s) 114
GluI GCNGC 4 cut(s) 83, 86, 465, 500
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 76
HapII CCGG 3 cut(s) 205, 434, 488
HgaI GACGC 2 cut(s) 411, 456
Hin1I GRCGYC 2 cut(s) 403, 467
Hin1II CATG 3 cut(s) 15, 189, 308
HpaII CCGG 3 cut(s) 205, 434, 488
HphI GGTGA 2 cut(s) 146, 254
Hpy188I TCNGA 2 cut(s) 326, 456
Hpy188III TCNNGA 4 cut(s) 45, 177, 215, 449
HpyCH4V TGCA 2 cut(s) 82, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 94, 305
HpyF3I CTNAG 3 cut(s) 128, 323, 455
Hsp92I GRCGYC 2 cut(s) 403, 467
Hsp92II CATG 3 cut(s) 15, 189, 308
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 57, 199
Lsp1109I GCAGC 2 cut(s) 94, 97
LweI GCATC 2 cut(s) 69, 264
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 271
MalI GATC 8 cut(s) 36, 153, 162, 283, 296, 429, 447, 453
MboI GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
MboII GAAGA 4 cut(s) 120, 159, 162, 165
MflI RGATCY 2 cut(s) 281, 451
MhlI GDGCHC 2 cut(s) 62, 204
MluCI AATT 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 8 cut(s) 187, 190, 211, 243, 380, 401, 436, 454
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 3 cut(s) 205, 434, 488
MspR9I CCNGG 2 cut(s) 435, 489
MwoI GCNNNNNNNGC 3 cut(s) 21, 94, 305
NciI CCSGG 2 cut(s) 435, 489
NdeII GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
NlaIII CATG 3 cut(s) 15, 189, 308
NmeAIII GCCGAG 1 cut(s) 431
NspI RCATGY 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PkrI GCNGC 4 cut(s) 84, 87, 466, 501
Ple19I CGATCG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 232
PstNI CAGNNNCTG 2 cut(s) 88, 454
PsuI RGATCY 2 cut(s) 281, 451
PvuI CGATCG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 71, 340
RsaNI GTAC 2 cut(s) 70, 339
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 4 cut(s) 83, 86, 465, 500
Sau3AI GATC 8 cut(s) 34, 151, 160, 281, 294, 427, 445, 451
ScaI AGTACT 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 435, 489
SduI GDGCHC 2 cut(s) 62, 204
SetI ASST 5 cut(s) 90, 115, 234, 372, 412
SfaNI GCATC 2 cut(s) 69, 264
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 40
SsiI CCGC 5 cut(s) 24, 464, 477, 499, 502
SspI AATATT 1 cut(s) 317
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 433, 487
TaqI TCGA 3 cut(s) 17, 372, 426
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 69
TauI GCSGC 2 cut(s) 467, 502
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 82, 85
TspRI CASTG 1 cut(s) 358
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.