Rh6AG496500
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016767
Physical Location & Seq
Forward (+)
67236677 .. 67246987
10311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG496500.1

Sequence Viewer

Length: 762 bp
ATGTCGATGGCCAGGACATGCTCGAAATGCGGAAACAAGGGTCACAATTCAAGGACTTGCTGGAGCACCACGCAGTACTACTGGACGCAGCAGCTGGATAAGCCAAAAGAAAGAAGATCTGGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAGCTTGATCATCATGACCTTTCTTCATCATCATCATCATCCTCAGTTTCTGTAATTTCAAGGAACGTGATCAAGAGAAAACGTCGGATCATGGACTACTGCAACAGCTGGTCATCATCTTCTCCACACTTGACCAGCTGCTTATCAGGATATCGAGCTAATATAGGTATAAATAGGCACGATCAGATCTCTCGTATCAATAATGGTGGCATTCAAGAAACAAATTATAACAAGGGAGTGGGATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGTATTGAAACGCTGGGTAAGGGTGACTGGAGGGGTATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAGGTCGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAATTAGTACCACCGCCGACACTGCAACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAGAAAAGATGCCGAGTTCGTCCCAGCCTTTTCGATGTAGATTATATAGGAGGCAAATTAAGCCAGCCGGTAAAGGACATATCTGCTAAAACTAATTTTGTTCACCGGCCAGCTGGTCAAGGACATATATGTGCATATATCGAAACGGCACACAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

253

Amino Acids

28.63

Weight (kDa)

9.68

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 132 - 176 2.1e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AciI CCGC 2 cut(s) 30, 552
AclWI GGATC 2 cut(s) 245, 483
AcoI YGGCCR 2 cut(s) 9, 707
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 77, 547
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 6 cut(s) 51, 210, 365, 434, 539, 586
AjnI CCWGG 2 cut(s) 11, 498
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 6 cut(s) 94, 154, 258, 288, 308, 713
AluI AGCT 6 cut(s) 94, 154, 258, 288, 308, 713
Alw21I GWGCWC 2 cut(s) 68, 411
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 245, 483
AlwNI CAGNNNCTG 2 cut(s) 94, 200
AoxI GGCC 2 cut(s) 9, 707
ApeKI GCWGC 3 cut(s) 88, 91, 288
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AsuHPI GGTGA 3 cut(s) 461, 472, 695
BalI TGGCCA 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 68, 411
BbvI GCAGC 3 cut(s) 100, 103, 275
BccI CCATC 2 cut(s) 387, 575
BciT130I CCWGG 2 cut(s) 13, 500
BclI TGATCA 2 cut(s) 157, 219
BcoDI GTCTC 1 cut(s) 137
BglII AGATCT 2 cut(s) 116, 336
BisI GCNGC 3 cut(s) 89, 92, 289
BlsI GCNGC 3 cut(s) 90, 93, 290
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 13, 500
BmrFI CCNGG 2 cut(s) 13, 500
BmsI GCATC 1 cut(s) 599
BpmI CTGGAG 2 cut(s) 82, 475
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse118I RCCGGY 2 cut(s) 667, 705
Bse1I ACTGG 3 cut(s) 86, 458, 507
BseBI CCWGG 2 cut(s) 13, 500
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 188, 398
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 148, 207, 544
BseNI ACTGG 3 cut(s) 86, 458, 507
BseRI GAGGAG 2 cut(s) 416, 419
BseXI GCAGC 3 cut(s) 100, 103, 275
BseYI CCCAGC 2 cut(s) 439, 623
BshFI GGCC 2 cut(s) 11, 709
BsiHKAI GWGCWC 2 cut(s) 68, 411
BsiSI CCGG 3 cut(s) 412, 668, 706
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 2 cut(s) 11, 709
Bsp1286I GDGCHC 2 cut(s) 68, 411
Bsp143I GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
BspACI CCGC 2 cut(s) 30, 552
BspANI GGCC 2 cut(s) 11, 709
BspCNI CTCAG 3 cut(s) 147, 206, 543
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 2 cut(s) 245, 483
BsrFI RCCGGY 2 cut(s) 667, 705
BsrI ACTGG 3 cut(s) 86, 458, 507
BssAI RCCGGY 2 cut(s) 667, 705
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
Bst2UI CCWGG 2 cut(s) 13, 500
Bst4CI ACNGT 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 665, 711
BstDEI CTNAG 3 cut(s) 134, 193, 530
BstF5I GGATG 2 cut(s) 188, 398
BstKTI GATC 7 cut(s) 119, 160, 222, 240, 334, 339, 491
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
BstMWI GCNNNNNNNGC 5 cut(s) 27, 100, 512, 560, 660
BstNI CCWGG 2 cut(s) 13, 500
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 11, 498
BstV1I GCAGC 3 cut(s) 100, 103, 275
BstX2I RGATCY 3 cut(s) 116, 336, 488
BstYI RGATCY 3 cut(s) 116, 336, 488
BsuRI GGCC 2 cut(s) 11, 709
BtsCI GGATG 2 cut(s) 188, 398
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 558, 760
Cac8I GCNNGC 2 cut(s) 665, 711
CaiI CAGNNNCTG 2 cut(s) 94, 200
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 2 cut(s) 667, 705
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 76, 546
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 4 cut(s) 18, 164, 241, 512
CviQI GTAC 2 cut(s) 76, 546
DdeI CTNAG 3 cut(s) 134, 193, 530
DpnI GATC 7 cut(s) 118, 159, 221, 239, 333, 338, 490
DpnII GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
DraIII CACNNNGTG 1 cut(s) 755
EaeI YGGCCR 2 cut(s) 9, 707
Eco32I GATATC 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 11, 498
EcoRV GATATC 1 cut(s) 302
FaeI CATG 4 cut(s) 21, 167, 244, 515
FaqI GGGAC 1 cut(s) 606
FatI CATG 4 cut(s) 17, 163, 240, 511
FbaI TGATCA 2 cut(s) 157, 219
Fnu4HI GCNGC 3 cut(s) 89, 92, 289
FokI GGATG 2 cut(s) 175, 405
Fsp4HI GCNGC 3 cut(s) 89, 92, 289
GluI GCNGC 3 cut(s) 89, 92, 289
GsaI CCCAGC 2 cut(s) 443, 627
GsuI CTGGAG 2 cut(s) 82, 475
HaeIII GGCC 2 cut(s) 11, 709
HapII CCGG 3 cut(s) 412, 668, 706
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 21, 167, 244, 515
HpaII CCGG 3 cut(s) 412, 668, 706
HphI GGTGA 3 cut(s) 461, 472, 695
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 3 cut(s) 237, 336, 533
Hpy188III TCNNGA 5 cut(s) 164, 223, 297, 365, 422
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4IV ACGT 2 cut(s) 216, 232
HpyCH4V TGCA 3 cut(s) 252, 563, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 100, 512, 560, 660
HpyF3I CTNAG 3 cut(s) 134, 193, 530
HpySE526I ACGT 2 cut(s) 216, 232
Hsp92II CATG 4 cut(s) 21, 167, 244, 515
Ksp22I TGATCA 2 cut(s) 157, 219
Kzo9I GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
LmnI GCTCC 2 cut(s) 63, 406
Lsp1109I GCAGC 3 cut(s) 100, 103, 275
LweI GCATC 1 cut(s) 599
MaeII ACGT 2 cut(s) 216, 232
MaeIII GTNAC 3 cut(s) 41, 449, 478
MalI GATC 7 cut(s) 118, 159, 221, 239, 333, 338, 490
MboI GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
MboII GAAGA 3 cut(s) 126, 165, 261
MflI RGATCY 3 cut(s) 116, 336, 488
MhlI GDGCHC 2 cut(s) 68, 411
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 6 cut(s) 46, 204, 373, 540, 656, 694
MluNI TGGCCA 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 7 cut(s) 202, 394, 397, 418, 450, 587, 644
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 1 cut(s) 729
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 4 cut(s) 94, 258, 288, 713
MspI CCGG 3 cut(s) 412, 668, 706
MspR9I CCNGG 2 cut(s) 13, 500
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 2 cut(s) 13, 500
MwoI GCNNNNNNNGC 5 cut(s) 27, 100, 512, 560, 660
NdeII GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
NlaIII CATG 4 cut(s) 21, 167, 244, 515
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 3 cut(s) 41, 449, 478
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 163
PctI GAATGC 1 cut(s) 360
PkrI GCNGC 3 cut(s) 90, 93, 290
PsiI TTATAA 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 11, 498
PspFI CCCAGC 2 cut(s) 439, 623
PspGI CCWGG 2 cut(s) 11, 498
PstNI CAGNNNCTG 2 cut(s) 94, 200
PsuI RGATCY 3 cut(s) 116, 336, 488
PvuII CAGCTG 4 cut(s) 94, 258, 288, 713
RsaI GTAC 2 cut(s) 77, 547
RsaNI GTAC 2 cut(s) 76, 546
RseI CAYNNNNRTG 1 cut(s) 729
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 3 cut(s) 89, 92, 289
Sau3AI GATC 7 cut(s) 116, 157, 219, 237, 331, 336, 488
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 13, 500
SduI GDGCHC 2 cut(s) 68, 411
SfaNI GCATC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 6 cut(s) 46, 204, 373, 540, 656, 694
SsiI CCGC 2 cut(s) 30, 552
SspI AATATT 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 11, 498
TaaI ACNGT 1 cut(s) 755
TaiI ACGT 2 cut(s) 219, 235
TaqI TCGA 7 cut(s) 5, 23, 304, 579, 591, 633, 741
TasI AATT 6 cut(s) 46, 204, 373, 540, 656, 694
TatI WGTACW 1 cut(s) 75
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 2 cut(s) 565, 760
TseFI GTSAC 3 cut(s) 41, 449, 478
TseI GCWGC 3 cut(s) 88, 91, 288
Tsp45I GTSAC 3 cut(s) 41, 449, 478
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 565, 760
XceI RCATGY 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.