Rroxscaffold_7G00158320
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016767
Physical Location & Seq
Reverse (-)
1802528 .. 1803850
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158320.1

Sequence Viewer

Length: 870 bp
ATGTCGATGGCCAGGACATGCTCGAAATGCGGAAACAAGGGTCACAATTCAAGGACTTGCTGGGGCACCACGCAGTACTACTTGACGCAGCAGCTGGATAAGCCAAAAGAGAGAAGATCTGGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAGCTTGATCATCATGACCTTTCTTCATCATCATCATCCTCAGTTTCTGTAATTTCAAGGAACGTGATCAAGAGAAAACGTCGGATCATGGACTACTGCAACAGCTGGTCATCATCTTCTCCACACTTGACCAGCTGCTTATCAGGATATCGAGATAATATAGGTATAAATAGGCACGATCAGATCTCTTGTATCAATAATGGCGGCCTTCAAGAAACAAATTATAACAAGGGAGTGGGATGGAGTGAGGAGGAGCACCGGAAGTTACTTGAGGGGATAGAAACGCTGGGTAAGGGTGACTGGAGGGGCATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAGGTCGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAAATAGTACCACCGCCAACACTGCAACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAGAAAAGATGCCGAGTTCGTCCCAGCCTTTTCGATGTCGGTAAAGATCAACTTGTCTCACCTCGTCAACTGATTGATATTAACACTGATAATCCCAATACTGAAGCATCTGTTAACAATCCATACGAGTGCTGGCCAGCCCTTCATTATTCGACGCCTCTCCTAATTGATGTTAATTTGAAGAACTCATCATCTCAGAGTGCAGCAGCAGGAGGACTTGACTTAGAACTTAAGCTTGCAGTGAGCATAATGCCGTTGGGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.33

Weight (kDa)

9.17

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 131 - 175 2.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 3 cut(s) 30, 354, 549
AclWI GGATC 2 cut(s) 242, 480
AcoI YGGCCR 2 cut(s) 9, 731
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 2 cut(s) 77, 544
AfiI CCNNNNNNNGG 1 cut(s) 496
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 6 cut(s) 51, 207, 362, 536, 583, 778
AjnI CCWGG 2 cut(s) 11, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 5 cut(s) 94, 154, 255, 285, 832
AluI AGCT 5 cut(s) 94, 154, 255, 285, 832
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 137, 658
AlwI GGATC 2 cut(s) 242, 480
AlwNI CAGNNNCTG 2 cut(s) 94, 197
AoxI GGCC 3 cut(s) 9, 355, 731
ApeKI GCWGC 5 cut(s) 88, 91, 285, 800, 803
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsuHPI GGTGA 3 cut(s) 458, 469, 648
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 2 cut(s) 11, 733
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 5 cut(s) 100, 103, 272, 812, 815
BccI CCATC 2 cut(s) 384, 572
BceAI ACGGC 1 cut(s) 835
BciT130I CCWGG 2 cut(s) 13, 497
BclI TGATCA 2 cut(s) 157, 216
BcoDI GTCTC 2 cut(s) 137, 658
BfrI CTTAAG 1 cut(s) 827
BglII AGATCT 2 cut(s) 116, 333
BisI GCNGC 6 cut(s) 89, 92, 286, 355, 801, 804
BlsI GCNGC 6 cut(s) 90, 93, 287, 356, 802, 805
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 13, 497
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 13, 497
BmsI GCATC 3 cut(s) 468, 596, 713
BpmI CTGGAG 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 455, 504
BseBI CCWGG 2 cut(s) 13, 497
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 2 cut(s) 185, 395
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 4 cut(s) 148, 204, 541, 806
BseNI ACTGG 2 cut(s) 455, 504
BseRI GAGGAG 2 cut(s) 413, 416
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 5 cut(s) 100, 103, 272, 812, 815
BseYI CCCAGC 3 cut(s) 60, 436, 620
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 3 cut(s) 11, 357, 733
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 2 cut(s) 137, 658
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 3 cut(s) 11, 357, 733
Bsp1286I GDGCHC 2 cut(s) 68, 408
Bsp143I GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
BspACI CCGC 3 cut(s) 30, 354, 549
BspANI GGCC 3 cut(s) 11, 357, 733
BspCNI CTCAG 4 cut(s) 147, 203, 540, 805
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 2 cut(s) 242, 480
BspT107I GGYRCC 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 827
BsrI ACTGG 2 cut(s) 455, 504
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
BssNI GRCGYC 1 cut(s) 752
Bst2UI CCWGG 2 cut(s) 13, 497
BstACI GRCGYC 1 cut(s) 752
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 731, 735, 834
BstDEI CTNAG 5 cut(s) 134, 190, 527, 792, 820
BstF5I GGATG 2 cut(s) 185, 395
BstKTI GATC 9 cut(s) 119, 160, 219, 237, 331, 336, 488, 646, 865
BstMAI GTCTC 2 cut(s) 137, 658
BstMBI GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
BstMWI GCNNNNNNNGC 4 cut(s) 27, 100, 509, 557
BstNI CCWGG 2 cut(s) 13, 497
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 11, 495
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 100, 103, 272, 812, 815
BstX2I RGATCY 3 cut(s) 116, 333, 485
BstYI RGATCY 3 cut(s) 116, 333, 485
BsuRI GGCC 3 cut(s) 11, 357, 733
BtsCI GGATG 2 cut(s) 185, 395
BtsI GCAGTG 2 cut(s) 555, 843
BtsIMutI CAGTG 3 cut(s) 555, 681, 843
Cac8I GCNNGC 3 cut(s) 731, 735, 834
CaiI CAGNNNCTG 2 cut(s) 94, 197
CciI TCATGA 1 cut(s) 163
CseI GACGC 2 cut(s) 94, 760
Csp6I GTAC 2 cut(s) 76, 543
CviAII CATG 4 cut(s) 18, 164, 238, 509
CviQI GTAC 2 cut(s) 76, 543
DdeI CTNAG 5 cut(s) 134, 190, 527, 792, 820
DpnI GATC 9 cut(s) 118, 159, 218, 236, 330, 335, 487, 645, 864
DpnII GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
EaeI YGGCCR 2 cut(s) 9, 731
Eco32I GATATC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 11, 495
EcoRV GATATC 1 cut(s) 299
FaeI CATG 4 cut(s) 21, 167, 241, 512
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FaqI GGGAC 1 cut(s) 603
FatI CATG 4 cut(s) 17, 163, 237, 508
FbaI TGATCA 2 cut(s) 157, 216
Fnu4HI GCNGC 6 cut(s) 89, 92, 286, 355, 801, 804
FokI GGATG 2 cut(s) 172, 402
Fsp4HI GCNGC 6 cut(s) 89, 92, 286, 355, 801, 804
GluI GCNGC 6 cut(s) 89, 92, 286, 355, 801, 804
GsaI CCCAGC 3 cut(s) 64, 440, 624
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 3 cut(s) 11, 357, 733
HapII CCGG 1 cut(s) 409
HgaI GACGC 2 cut(s) 94, 760
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 4 cut(s) 21, 167, 241, 512
HincII GTYRAC 2 cut(s) 665, 712
HindII GTYRAC 2 cut(s) 665, 712
HindIII AAGCTT 1 cut(s) 830
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 458, 469, 648
Hpy166II GTNNAC 2 cut(s) 665, 712
Hpy188I TCNGA 4 cut(s) 234, 333, 530, 795
Hpy188III TCNNGA 5 cut(s) 164, 220, 294, 302, 362
Hpy8I GTNNAC 2 cut(s) 665, 712
Hpy99I CGWCG 2 cut(s) 234, 754
HpyAV CCTTC 2 cut(s) 368, 749
HpyCH4IV ACGT 2 cut(s) 213, 229
HpyCH4V TGCA 4 cut(s) 249, 560, 800, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 100, 509, 557
HpyF3I CTNAG 5 cut(s) 134, 190, 527, 792, 820
HpySE526I ACGT 2 cut(s) 213, 229
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 4 cut(s) 21, 167, 241, 512
Ksp22I TGATCA 2 cut(s) 157, 216
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 5 cut(s) 100, 103, 272, 812, 815
LweI GCATC 3 cut(s) 468, 596, 713
MaeII ACGT 2 cut(s) 213, 229
MaeIII GTNAC 4 cut(s) 41, 414, 446, 475
MalI GATC 9 cut(s) 118, 159, 218, 236, 330, 335, 487, 645, 864
MboI GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
MboII GAAGA 4 cut(s) 126, 165, 258, 790
MflI RGATCY 3 cut(s) 116, 333, 485
MhlI GDGCHC 2 cut(s) 68, 408
MlsI TGGCCA 2 cut(s) 11, 733
MluCI AATT 5 cut(s) 46, 201, 370, 762, 772
MluNI TGGCCA 2 cut(s) 11, 733
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 9 cut(s) 199, 391, 394, 415, 447, 584, 669, 765, 803
Mox20I TGGCCA 2 cut(s) 11, 733
MscI TGGCCA 2 cut(s) 11, 733
MseI TTAA 4 cut(s) 678, 711, 771, 828
MslI CAYNNNNRTG 1 cut(s) 724
Msp20I TGGCCA 2 cut(s) 11, 733
MspA1I CMGCKG 3 cut(s) 94, 255, 285
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 13, 497
MvaI CCWGG 2 cut(s) 13, 497
MwoI GCNNNNNNNGC 4 cut(s) 27, 100, 509, 557
NdeII GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
NlaIII CATG 4 cut(s) 21, 167, 241, 512
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 635
NmuCI GTSAC 3 cut(s) 41, 446, 475
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 163
PkrI GCNGC 6 cut(s) 90, 93, 287, 356, 802, 805
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 11, 495
PspFI CCCAGC 3 cut(s) 60, 436, 620
PspGI CCWGG 2 cut(s) 11, 495
PspN4I GGNNCC 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 94, 197
PsuI RGATCY 3 cut(s) 116, 333, 485
PvuII CAGCTG 3 cut(s) 94, 255, 285
RsaI GTAC 2 cut(s) 77, 544
RsaNI GTAC 2 cut(s) 76, 543
RseI CAYNNNNRTG 1 cut(s) 724
SaqAI TTAA 4 cut(s) 678, 711, 771, 828
SatI GCNGC 6 cut(s) 89, 92, 286, 355, 801, 804
Sau3AI GATC 9 cut(s) 116, 157, 216, 234, 328, 333, 485, 643, 862
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 13, 497
SduI GDGCHC 2 cut(s) 68, 408
SfaNI GCATC 3 cut(s) 468, 596, 713
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 2 cut(s) 419, 827
SmoI CTYRAG 2 cut(s) 419, 827
Sse9I AATT 5 cut(s) 46, 201, 370, 762, 772
SsiI CCGC 3 cut(s) 30, 354, 549
SspI AATATT 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 11, 495
TaiI ACGT 2 cut(s) 216, 232
TaqI TCGA 7 cut(s) 5, 23, 301, 576, 588, 630, 749
TasI AATT 5 cut(s) 46, 201, 370, 762, 772
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 357
Tru1I TTAA 4 cut(s) 678, 711, 771, 828
Tru9I TTAA 4 cut(s) 678, 711, 771, 828
TscAI CASTG 3 cut(s) 562, 688, 843
TseFI GTSAC 3 cut(s) 41, 446, 475
TseI GCWGC 5 cut(s) 88, 91, 285, 800, 803
Tsp45I GTSAC 3 cut(s) 41, 446, 475
TspDTI ATGAA 2 cut(s) 165, 731
TspRI CASTG 3 cut(s) 562, 688, 843
Vha464I CTTAAG 1 cut(s) 827
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.