RLG00000010463
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016767
Physical Location & Seq
Reverse (-)
1837203 .. 1838352
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010463

Sequence Viewer

Length: 894 bp
ATGTCGATGGCCAGGACATGCTCGAAATGCGGAAACAAGGGTCACAATTCAAGGACTTGCTGGAACACCACGCAGTACTACTGGGCGCAGCAGCTGGATAAGCCAAAAGAAAGAAGATCTGGTAATAGCAGTTTCAGGCTCTTTGGGGTTCAGCTTGATCATCATGACCTTTCTTCATCATCATCATCCTCAGTTTCTGTAATTTCAAGGAACGTGATCAAGAGAAAAGGTCGGACCATGGACTACTGCAACAGCTGGTCATCATCTTCTCCACACTTGACCAGCTGCTTATCAGGATATCAAGCTAATATAGGTATAAATAGGCACGATCAGATCTCTCGTATCAATAATGGCGGCCTTCAAGAAACACATTATAACAAGGGAGTGGGATGGATTGAGGAGGAGCACCGGAAATTTCTTGAGGGGATTGAAACGCTGGGTAAGGGTGACTGGAGGGGCATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAGGTCGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAAATAGTACCACCGCCAACACTGCAACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAGAAAAGATGCCGAGTTCGTCCCAGCCTTTACGATGTCGGTAAAGATCAACTTGTCTCACCTCGTCAACTGATTGATATTAACACTAATAATCCCAATACTGAAGCATCTGTTAACAATCCATACGAGTGCTGGCCAGCCGTTCATTATTCGACGCCTCTCCGAATTGATGTTAATTTGAAGAACTCATCATCTCAGAGTGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTGACTTAGAACTTAAGCTTGCAGTAAGCATAATGCCATTGGGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

298

Amino Acids

32.93

Weight (kDa)

9.38

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 131 - 175 1.5e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AciI CCGC 3 cut(s) 30, 354, 549
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 9, 731
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 2 cut(s) 77, 544
AfiI CCNNNNNNNGG 1 cut(s) 496
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 7 cut(s) 51, 207, 362, 431, 536, 583, 778
AjnI CCWGG 2 cut(s) 11, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 6 cut(s) 94, 154, 255, 285, 305, 856
AluI AGCT 6 cut(s) 94, 154, 255, 285, 305, 856
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 2 cut(s) 94, 197
AoxI GGCC 3 cut(s) 9, 355, 731
ApeKI GCWGC 6 cut(s) 88, 91, 285, 800, 803, 806
ApoI RAATTY 1 cut(s) 413
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 458, 469, 648
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 2 cut(s) 11, 733
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 6 cut(s) 100, 103, 272, 812, 815, 818
BccI CCATC 2 cut(s) 384, 572
BceAI ACGGC 1 cut(s) 722
BciT130I CCWGG 2 cut(s) 13, 497
BclI TGATCA 2 cut(s) 157, 216
BcoDI GTCTC 1 cut(s) 658
BfrI CTTAAG 1 cut(s) 851
BglII AGATCT 2 cut(s) 116, 333
BisI GCNGC 7 cut(s) 89, 92, 286, 355, 801, 804, 807
BlsI GCNGC 7 cut(s) 90, 93, 287, 356, 802, 805, 808
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 13, 497
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 13, 497
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 468, 596, 713
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 237, 495
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 3 cut(s) 86, 455, 504
BseBI CCWGG 2 cut(s) 13, 497
BseDI CCNNGG 2 cut(s) 237, 495
BseGI GGATG 2 cut(s) 185, 395
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 204, 541, 806
BseNI ACTGG 3 cut(s) 86, 455, 504
BseRI GAGGAG 9 cut(s) 413, 416, 828, 831, 834, 837, 840, 843, 846
BseXI GCAGC 6 cut(s) 100, 103, 272, 812, 815, 818
BseYI CCCAGC 2 cut(s) 436, 620
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 3 cut(s) 11, 357, 733
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 3 cut(s) 11, 357, 733
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 3 cut(s) 30, 354, 549
BspANI GGCC 3 cut(s) 11, 357, 733
BspCNI CTCAG 3 cut(s) 203, 540, 805
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 1 cut(s) 480
BspTI CTTAAG 1 cut(s) 851
BsrI ACTGG 3 cut(s) 86, 455, 504
BssECI CCNNGG 2 cut(s) 237, 495
BssMI GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 13, 497
BstACI GRCGYC 1 cut(s) 752
BstAFI CTTAAG 1 cut(s) 851
BstC8I GCNNGC 3 cut(s) 731, 735, 858
BstDEI CTNAG 4 cut(s) 190, 527, 792, 844
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 185, 395
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 8 cut(s) 119, 160, 219, 331, 336, 488, 646, 889
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
BstMWI GCNNNNNNNGC 5 cut(s) 27, 100, 509, 557, 806
BstNI CCWGG 2 cut(s) 13, 497
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 11, 495
BstV1I GCAGC 6 cut(s) 100, 103, 272, 812, 815, 818
BstX2I RGATCY 3 cut(s) 116, 333, 485
BstYI RGATCY 3 cut(s) 116, 333, 485
BsuRI GGCC 3 cut(s) 11, 357, 733
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 185, 395
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 3 cut(s) 731, 735, 858
CaiI CAGNNNCTG 2 cut(s) 94, 197
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 760
Csp6I GTAC 2 cut(s) 76, 543
CviAII CATG 4 cut(s) 18, 164, 238, 509
CviQI GTAC 2 cut(s) 76, 543
DdeI CTNAG 4 cut(s) 190, 527, 792, 844
DpnI GATC 8 cut(s) 118, 159, 218, 330, 335, 487, 645, 888
DpnII GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
EaeI YGGCCR 2 cut(s) 9, 731
Eco130I CCWWGG 1 cut(s) 237
Eco32I GATATC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 11, 495
EcoRV GATATC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 21, 167, 241, 512
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FaqI GGGAC 1 cut(s) 603
FatI CATG 4 cut(s) 17, 163, 237, 508
FbaI TGATCA 2 cut(s) 157, 216
Fnu4HI GCNGC 7 cut(s) 89, 92, 286, 355, 801, 804, 807
FokI GGATG 2 cut(s) 172, 402
Fsp4HI GCNGC 7 cut(s) 89, 92, 286, 355, 801, 804, 807
GlaI GCGC 1 cut(s) 87
GluI GCNGC 7 cut(s) 89, 92, 286, 355, 801, 804, 807
GsaI CCCAGC 2 cut(s) 440, 624
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 3 cut(s) 11, 357, 733
HapII CCGG 1 cut(s) 409
HgaI GACGC 1 cut(s) 760
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 4 cut(s) 21, 167, 241, 512
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 2 cut(s) 665, 712
HindII GTYRAC 2 cut(s) 665, 712
HindIII AAGCTT 1 cut(s) 854
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 458, 469, 648
Hpy166II GTNNAC 2 cut(s) 665, 712
Hpy188I TCNGA 5 cut(s) 234, 333, 530, 761, 795
Hpy188III TCNNGA 5 cut(s) 164, 220, 294, 362, 419
Hpy8I GTNNAC 2 cut(s) 665, 712
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 249, 560, 800, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 100, 509, 557, 806
HpyF3I CTNAG 4 cut(s) 190, 527, 792, 844
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 4 cut(s) 21, 167, 241, 512
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 157, 216
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 6 cut(s) 100, 103, 272, 812, 815, 818
LweI GCATC 3 cut(s) 468, 596, 713
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 41, 446, 475
MalI GATC 8 cut(s) 118, 159, 218, 330, 335, 487, 645, 888
MboI GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
MboII GAAGA 4 cut(s) 126, 165, 258, 790
MflI RGATCY 3 cut(s) 116, 333, 485
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 2 cut(s) 11, 733
MluCI AATT 5 cut(s) 46, 201, 413, 762, 772
MluNI TGGCCA 2 cut(s) 11, 733
MmeI TCCRAC 1 cut(s) 212
Mox20I TGGCCA 2 cut(s) 11, 733
MscI TGGCCA 2 cut(s) 11, 733
MseI TTAA 4 cut(s) 678, 711, 771, 852
MslI CAYNNNNRTG 1 cut(s) 724
Msp20I TGGCCA 2 cut(s) 11, 733
MspA1I CMGCKG 3 cut(s) 94, 255, 285
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 13, 497
MvaI CCWGG 2 cut(s) 13, 497
MwoI GCNNNNNNNGC 5 cut(s) 27, 100, 509, 557, 806
NcoI CCATGG 1 cut(s) 237
NdeII GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
NlaIII CATG 4 cut(s) 21, 167, 241, 512
NmeAIII GCCGAG 1 cut(s) 635
NmuCI GTSAC 3 cut(s) 41, 446, 475
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 163
PkrI GCNGC 7 cut(s) 90, 93, 287, 356, 802, 805, 808
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 11, 495
PspFI CCCAGC 2 cut(s) 436, 620
PspGI CCWGG 2 cut(s) 11, 495
PspPI GGNCC 1 cut(s) 234
PstNI CAGNNNCTG 2 cut(s) 94, 197
PsuI RGATCY 3 cut(s) 116, 333, 485
PvuII CAGCTG 3 cut(s) 94, 255, 285
RsaI GTAC 2 cut(s) 77, 544
RsaNI GTAC 2 cut(s) 76, 543
RseI CAYNNNNRTG 1 cut(s) 724
SaqAI TTAA 4 cut(s) 678, 711, 771, 852
SatI GCNGC 7 cut(s) 89, 92, 286, 355, 801, 804, 807
Sau3AI GATC 8 cut(s) 116, 157, 216, 328, 333, 485, 643, 886
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 13, 497
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 468, 596, 713
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 2 cut(s) 419, 851
SmoI CTYRAG 2 cut(s) 419, 851
Sse9I AATT 5 cut(s) 46, 201, 413, 762, 772
SsiI CCGC 3 cut(s) 30, 354, 549
SspI AATATT 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 11, 495
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 216
TaqI TCGA 5 cut(s) 5, 23, 576, 588, 749
TasI AATT 5 cut(s) 46, 201, 413, 762, 772
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 357
Tru1I TTAA 4 cut(s) 678, 711, 771, 852
Tru9I TTAA 4 cut(s) 678, 711, 771, 852
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 3 cut(s) 41, 446, 475
TseI GCWGC 6 cut(s) 88, 91, 285, 800, 803, 806
Tsp45I GTSAC 3 cut(s) 41, 446, 475
TspDTI ATGAA 2 cut(s) 165, 731
TspRI CASTG 1 cut(s) 562
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.