RLG00000033676
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016767
Physical Location & Seq
Forward (+)
30650082 .. 30653571
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033676

Sequence Viewer

Length: 1410 bp
ATGGCTAGGACATGCTCGAAATGCGGGGACAGGGGTCACAATTCAAGAACTTGCTGGAGCACCATGCAGTACTACTGGAGGCAGCAGCTGAATAAGCCGAAAGAAAGAAGAGCTAGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAGCTTGATCATCACGACCTTTCTTCTTCTTCTTCATCCTCAGTTTCTGTGATTTCAAGGAAAGAGATCAAGAGAAAACGTCGGAGCATGGAGTACTGCAACAGCTGGTCATCATCTACTCCACATTTCACCAGCTGCTTATCGGGATATCAAGCTAATATAGGTAAAAATAGGCACGATCAGATCTGGCGTATCAATAATGGCGGCCTCCAAGAAACTAATTATAACAAGGGATTGGCATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTTATGCCCAAAAATATTTTCTCAGACTGCAAAATAGTACCACCGCCAACACTGCAGCCATCAACAACCTCGACTTCAACTTCGACACCAACAAGAAAAGTCGCCGAAGTTGTCCCAGCCCTTTCGATGTCGGTAACGATCAACTTGTCTCCCCTCGTCAACTGATTGATATTAACACTAATAATCCCAATACTGAAGCATCTGTTAACAATCCATATCAGTACCGCTGGCCAGCCGTTCATAATTCGACGCCTCTCCAAATTGATGTTAATTTGAAGAACTCATCGTCTCAGAGTGCAGTAGCAGGAGGAGGAGGAGGACTTGACTTAGAACTTAAGCTTGCAGCAAGCATAATGCCGTTGTGGATAGCTAGGGCAAATGGAGAAGTGGTGGTGATCGGAGTAGAGTATGAAACAGAGCCAGAAATTTGTAACAATTGTGGCATCATTAGTCATTTGGCTGCTTCATGCCGTTCTATAGTGCTCCATAATGAAGACACTAGGTTAGACCCATTCCACCTTCTGACCAGATGGAGGCAGCTCCTCTTAACTGTCATCCCATCTGAATCTAGTGACAGTGTGCCGCCCGGTTTTCCTAGAGTAACCCCAGTAGCAGAAGTACAAGCTTCTAGTTCTACGTCAAATCTAGTAGCTTCTCCTATTGATCCTTCTACTTTGGTCACGGATTGTAATCATGCACCGGTCATTGAACAGACTGATGAGACAGTTAGGAAGGAGGGTGAATTTAACCCGGTCCTCTTAAAAAAATCAAAGAAGCTCTTGAAGCAGGTTGAAAAATCCAAGAAAAAAGTTTCCCGTAAACCCACTGGACGGGCTCTAGCGTGGGAGCTGGTCTTAAGCATCTATGATGAAGTTTCTCTACTGGAACGCCCGCGGAATGGCAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

470

Amino Acids

52.6

Weight (kDa)

9.3

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 128 - 173 1.2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc36I ACCTGC 1 cut(s) 1276
AccII CGCG 1 cut(s) 1393
AciI CCGC 7 cut(s) 24, 348, 543, 724, 1082, 1391, 1393
AclWI GGATC 1 cut(s) 1157
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 2 cut(s) 924, 1241
AcuI CTGAAG 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 5 cut(s) 71, 239, 538, 722, 1119
AfiI CCNNNNNNNGG 3 cut(s) 1032, 1329, 1397
AflII CTTAAG 2 cut(s) 833, 1354
AgeI ACCGGT 1 cut(s) 1198
AgsI TTSAA 8 cut(s) 45, 201, 425, 577, 775, 1208, 1282, 1292
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
Alw21I GWGCWC 3 cut(s) 62, 402, 984
Alw26I GTCTC 4 cut(s) 131, 652, 792, 1214
AlwI GGATC 1 cut(s) 1157
AlwNI CAGNNNCTG 2 cut(s) 88, 191
AoxI GGCC 2 cut(s) 349, 728
ApeKI GCWGC 7 cut(s) 82, 85, 279, 554, 842, 959, 1036
ApoI RAATTY 2 cut(s) 924, 1241
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AsiGI ACCGGT 1 cut(s) 1198
AspS9I GGNCC 1 cut(s) 1252
AsuC2I CCSGG 2 cut(s) 1086, 1250
AsuHPI GGTGA 4 cut(s) 265, 452, 904, 1250
AvaII GGWCC 1 cut(s) 1252
BalI TGGCCA 1 cut(s) 730
BanII GRGCYC 1 cut(s) 1336
BarI GAAGNNNNNNTAC 2 cut(s) 1362, 1394
BbsI GAAGAC 1 cut(s) 999
Bbv12I GWGCWC 3 cut(s) 62, 402, 984
BbvI GCAGC 7 cut(s) 94, 97, 266, 566, 854, 946, 1048
BccI CCATC 3 cut(s) 566, 1023, 1066
BceAI ACGGC 3 cut(s) 719, 841, 954
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 2 cut(s) 1086, 1250
BcoDI GTCTC 4 cut(s) 131, 652, 792, 1214
BfaI CTAG 9 cut(s) 6, 114, 870, 999, 1068, 1095, 1128, 1145, 1337
BfmI CTRYAG 2 cut(s) 552, 975
BfrI CTTAAG 2 cut(s) 833, 1354
BfuAI ACCTGC 1 cut(s) 1276
BglII AGATCT 2 cut(s) 327, 479
BisI GCNGC 9 cut(s) 83, 86, 280, 349, 555, 843, 960, 1037, 1082
BlsI GCNGC 9 cut(s) 84, 87, 281, 350, 556, 844, 961, 1038, 1083
BmcAI AGTACT 2 cut(s) 71, 239
Bme1390I CCNGG 2 cut(s) 1086, 1250
Bme18I GGWCC 1 cut(s) 1252
BmgT120I GGNCC 1 cut(s) 1252
BmrFI CCNGG 2 cut(s) 1086, 1250
BmrI ACTGGG 1 cut(s) 1100
BmsI GCATC 4 cut(s) 462, 707, 951, 1368
BmuI ACTGGG 1 cut(s) 1100
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 999
BpmI CTGGAG 2 cut(s) 76, 97
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 1086, 1250
BsaBI GATNNNNATC 1 cut(s) 1188
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 1391
BsaWI WCCGGW 2 cut(s) 402, 1198
BsaXI ACNNNNNCTCC 4 cut(s) 466, 496, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 1032, 1329, 1397
Bse118I RCCGGY 1 cut(s) 1198
Bse1I ACTGG 5 cut(s) 80, 498, 1106, 1330, 1386
Bse8I GATNNNNATC 1 cut(s) 1188
BseDI CCNNGG 1 cut(s) 1391
BseGI GGATG 2 cut(s) 179, 1053
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 3 cut(s) 1032, 1329, 1397
BseMII CTCAG 4 cut(s) 142, 198, 535, 803
BseNI ACTGG 5 cut(s) 80, 498, 1106, 1330, 1386
BseRI GAGGAG 6 cut(s) 407, 410, 822, 825, 828, 1031
BseXI GCAGC 7 cut(s) 94, 97, 266, 566, 854, 946, 1048
BseYI CCCAGC 2 cut(s) 430, 614
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 1 cut(s) 1393
BshFI GGCC 2 cut(s) 351, 730
BshTI ACCGGT 1 cut(s) 1198
BsiHKAI GWGCWC 3 cut(s) 62, 402, 984
BsiSI CCGG 4 cut(s) 403, 1086, 1199, 1250
BslFI GGGAC 2 cut(s) 41, 597
BslI CCNNNNNNNGG 3 cut(s) 1032, 1329, 1397
BsmAI GTCTC 4 cut(s) 131, 652, 792, 1214
BsmBI CGTCTC 1 cut(s) 792
BsmFI GGGAC 2 cut(s) 41, 597
BsnI GGCC 2 cut(s) 351, 730
Bsp1286I GDGCHC 4 cut(s) 62, 402, 984, 1336
Bsp143I GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
BspACI CCGC 7 cut(s) 24, 348, 543, 724, 1082, 1391, 1393
BspANI GGCC 2 cut(s) 351, 730
BspCNI CTCAG 4 cut(s) 141, 197, 534, 802
BspFNI CGCG 1 cut(s) 1393
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 1276
BspPI GGATC 1 cut(s) 1157
BspQI GCTCTTC 1 cut(s) 103
BspTI CTTAAG 2 cut(s) 833, 1354
BsrFI RCCGGY 1 cut(s) 1198
BsrI ACTGG 5 cut(s) 80, 498, 1106, 1330, 1386
BssAI RCCGGY 1 cut(s) 1198
BssECI CCNNGG 1 cut(s) 1391
BssMI GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
BssNI GRCGYC 1 cut(s) 749
Bst4CI ACNGT 3 cut(s) 1051, 1076, 1225
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 749
BstAFI CTTAAG 2 cut(s) 833, 1354
BstC8I GCNNGC 5 cut(s) 728, 732, 840, 847, 1391
BstDEI CTNAG 5 cut(s) 128, 184, 521, 789, 826
BstDSI CCRYGG 1 cut(s) 1391
BstF5I GGATG 2 cut(s) 179, 1053
BstFNI CGCG 1 cut(s) 1393
BstKTI GATC 9 cut(s) 154, 213, 325, 330, 482, 495, 640, 897, 1165
BstMAI GTCTC 4 cut(s) 131, 652, 792, 1214
BstMBI GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 21, 94, 503, 551, 1282
BstNSI RCATGY 1 cut(s) 15
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 1084, 1248
BstSFI CTRYAG 2 cut(s) 552, 975
BstUI CGCG 1 cut(s) 1393
BstV1I GCAGC 7 cut(s) 94, 97, 266, 566, 854, 946, 1048
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 2 cut(s) 327, 479
BstYI RGATCY 2 cut(s) 327, 479
BsuRI GGCC 2 cut(s) 351, 730
BtgI CCRYGG 1 cut(s) 1391
BtsCI GGATG 2 cut(s) 179, 1053
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 3 cut(s) 549, 1081, 1323
BveI ACCTGC 1 cut(s) 1276
Cac8I GCNNGC 5 cut(s) 728, 732, 840, 847, 1391
CaiI CAGNNNCTG 2 cut(s) 88, 191
Cfr10I RCCGGY 1 cut(s) 1198
Cfr13I GGNCC 1 cut(s) 1252
Cfr42I CCGCGG 1 cut(s) 1394
CseI GACGC 1 cut(s) 757
Csp6I GTAC 5 cut(s) 70, 238, 537, 721, 1118
CspAI ACCGGT 1 cut(s) 1198
CviAII CATG 6 cut(s) 12, 64, 232, 384, 966, 1193
CviQI GTAC 5 cut(s) 70, 238, 537, 721, 1118
DdeI CTNAG 5 cut(s) 128, 184, 521, 789, 826
DpnI GATC 9 cut(s) 153, 212, 324, 329, 481, 494, 639, 896, 1164
DpnII GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
EaeI YGGCCR 1 cut(s) 728
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 1336
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 1252
Eco57I CTGAAG 1 cut(s) 714
EcoRV GATATC 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 1336
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 6 cut(s) 15, 67, 235, 387, 969, 1196
FalI AAGNNNNNCTT 2 cut(s) 1262, 1294
FaqI GGGAC 2 cut(s) 41, 597
FatI CATG 6 cut(s) 11, 63, 231, 383, 965, 1192
FauI CCCGC 2 cut(s) 17, 1398
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 9 cut(s) 83, 86, 280, 349, 555, 843, 960, 1037, 1082
FokI GGATG 2 cut(s) 166, 1040
FriOI GRGCYC 1 cut(s) 1336
Fsp4HI GCNGC 9 cut(s) 83, 86, 280, 349, 555, 843, 960, 1037, 1082
FspBI CTAG 9 cut(s) 6, 114, 870, 999, 1068, 1095, 1128, 1145, 1337
GluI GCNGC 9 cut(s) 83, 86, 280, 349, 555, 843, 960, 1037, 1082
GsaI CCCAGC 2 cut(s) 434, 618
GsuI CTGGAG 2 cut(s) 76, 97
HaeIII GGCC 2 cut(s) 351, 730
HapII CCGG 4 cut(s) 403, 1086, 1199, 1250
HgaI GACGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 6 cut(s) 15, 67, 235, 387, 969, 1196
HincII GTYRAC 2 cut(s) 659, 706
HindII GTYRAC 2 cut(s) 659, 706
HindIII AAGCTT 2 cut(s) 836, 1122
HinfI GANTC 1 cut(s) 1064
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 4 cut(s) 403, 1086, 1199, 1250
HphI GGTGA 4 cut(s) 265, 452, 904, 1250
Hpy166II GTNNAC 3 cut(s) 659, 706, 1319
Hpy188I TCNGA 7 cut(s) 228, 327, 524, 792, 899, 1023, 1063
Hpy188III TCNNGA 6 cut(s) 45, 158, 214, 288, 413, 1279
Hpy8I GTNNAC 3 cut(s) 659, 706, 1319
Hpy99I CGWCG 2 cut(s) 228, 751
HpyAV CCTTC 3 cut(s) 1028, 1176, 1225
HpyCH4III ACNGT 3 cut(s) 1051, 1076, 1225
HpyCH4IV ACGT 2 cut(s) 223, 1136
HpyCH4V TGCA 7 cut(s) 67, 243, 529, 554, 797, 842, 1196
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 94, 503, 551, 1282
HpyF3I CTNAG 5 cut(s) 128, 184, 521, 789, 826
HpySE526I ACGT 2 cut(s) 223, 1136
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 6 cut(s) 15, 67, 235, 387, 969, 1196
Ksp22I TGATCA 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 706
KspI CCGCGG 1 cut(s) 1394
Kzo9I GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 6 cut(s) 57, 228, 397, 987, 1044, 1345
Lsp1109I GCAGC 7 cut(s) 94, 97, 266, 566, 854, 946, 1048
LweI GCATC 4 cut(s) 462, 707, 951, 1368
MaeI CTAG 9 cut(s) 6, 114, 870, 999, 1068, 1095, 1128, 1145, 1337
MaeII ACGT 2 cut(s) 223, 1136
MaeIII GTNAC 7 cut(s) 35, 469, 632, 929, 1070, 1099, 1177
MalI GATC 9 cut(s) 153, 212, 324, 329, 481, 494, 639, 896, 1164
MboI GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
MboII GAAGA 7 cut(s) 120, 159, 162, 165, 168, 787, 1004
MfeI CAATTG 1 cut(s) 934
MflI RGATCY 2 cut(s) 327, 479
MhlI GDGCHC 4 cut(s) 62, 402, 984, 1336
MlsI TGGCCA 1 cut(s) 730
MluCI AATT 8 cut(s) 40, 364, 742, 759, 769, 924, 934, 1241
MluNI TGGCCA 1 cut(s) 730
MmeI TCCRAC 2 cut(s) 206, 509
Mox20I TGGCCA 1 cut(s) 730
MscI TGGCCA 1 cut(s) 730
MseI TTAA 8 cut(s) 672, 705, 768, 834, 1046, 1245, 1259, 1355
Msp20I TGGCCA 1 cut(s) 730
MspA1I CMGCKG 5 cut(s) 88, 249, 279, 726, 1393
MspCI CTTAAG 2 cut(s) 833, 1354
MspI CCGG 4 cut(s) 403, 1086, 1199, 1250
MspR9I CCNGG 2 cut(s) 1086, 1250
MunI CAATTG 1 cut(s) 934
MvnI CGCG 1 cut(s) 1393
MwoI GCNNNNNNNGC 5 cut(s) 21, 94, 503, 551, 1282
NciI CCSGG 2 cut(s) 1086, 1250
NdeII GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
NlaIII CATG 6 cut(s) 15, 67, 235, 387, 969, 1196
NmuCI GTSAC 3 cut(s) 35, 1070, 1177
NspI RCATGY 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 1064
PinAI ACCGGT 1 cut(s) 1198
PkrI GCNGC 9 cut(s) 84, 87, 281, 350, 556, 844, 961, 1038, 1083
PshAI GACNNNNGTC 1 cut(s) 33
PsiI TTATAA 1 cut(s) 369
PspFI CCCAGC 2 cut(s) 430, 614
PspPI GGNCC 1 cut(s) 1252
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 2 cut(s) 88, 191
PsuI RGATCY 2 cut(s) 327, 479
PvuII CAGCTG 3 cut(s) 88, 249, 279
RsaI GTAC 5 cut(s) 71, 239, 538, 722, 1119
RsaNI GTAC 5 cut(s) 70, 238, 537, 721, 1118
SacII CCGCGG 1 cut(s) 1394
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 8 cut(s) 672, 705, 768, 834, 1046, 1245, 1259, 1355
SatI GCNGC 9 cut(s) 83, 86, 280, 349, 555, 843, 960, 1037, 1082
Sau3AI GATC 9 cut(s) 151, 210, 322, 327, 479, 492, 637, 894, 1162
Sau96I GGNCC 1 cut(s) 1252
ScaI AGTACT 2 cut(s) 71, 239
ScrFI CCNGG 2 cut(s) 1086, 1250
SduI GDGCHC 4 cut(s) 62, 402, 984, 1336
SfaNI GCATC 4 cut(s) 462, 707, 951, 1368
SfcI CTRYAG 2 cut(s) 552, 975
Sfr303I CCGCGG 1 cut(s) 1394
SgrBI CCGCGG 1 cut(s) 1394
SinI GGWCC 1 cut(s) 1252
SmlI CTYRAG 3 cut(s) 413, 833, 1354
SmoI CTYRAG 3 cut(s) 413, 833, 1354
Sse9I AATT 8 cut(s) 40, 364, 742, 759, 769, 924, 934, 1241
SsiI CCGC 7 cut(s) 24, 348, 543, 724, 1082, 1391, 1393
SspI AATATT 1 cut(s) 515
SspMI CTAG 9 cut(s) 6, 114, 870, 999, 1068, 1095, 1128, 1145, 1337
StyD4I CCNGG 2 cut(s) 1084, 1248
TaaI ACNGT 3 cut(s) 1051, 1076, 1225
TaiI ACGT 2 cut(s) 226, 1139
TaqI TCGA 5 cut(s) 17, 570, 582, 624, 746
TasI AATT 8 cut(s) 40, 364, 742, 759, 769, 924, 934, 1241
TatI WGTACW 3 cut(s) 69, 237, 1117
TauI GCSGC 2 cut(s) 351, 1084
TfiI GAWTC 1 cut(s) 1064
Tru1I TTAA 8 cut(s) 672, 705, 768, 834, 1046, 1245, 1259, 1355
Tru9I TTAA 8 cut(s) 672, 705, 768, 834, 1046, 1245, 1259, 1355
TscAI CASTG 3 cut(s) 556, 1081, 1330
TseFI GTSAC 3 cut(s) 35, 1070, 1177
TseI GCWGC 7 cut(s) 82, 85, 279, 554, 842, 959, 1036
Tsp45I GTSAC 3 cut(s) 35, 1070, 1177
TspDTI ATGAA 6 cut(s) 168, 728, 924, 954, 1005, 1383
TspGWI ACGGA 1 cut(s) 1196
TspRI CASTG 3 cut(s) 556, 1081, 1330
Vha464I CTTAAG 2 cut(s) 833, 1354
VpaK11BI GGWCC 1 cut(s) 1252
XapI RAATTY 2 cut(s) 924, 1241
XceI RCATGY 1 cut(s) 15
XspI CTAG 9 cut(s) 6, 114, 870, 999, 1068, 1095, 1128, 1145, 1337
ZrmI AGTACT 2 cut(s) 71, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.