Rh5CG279100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016767
Physical Location & Seq
Forward (+)
30423312 .. 30424221
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG279100.1

Sequence Viewer

Length: 675 bp
ATGGCGAGGACATGCTCGAAATGCGGGGACAGGAATCACAATTCAAGAACTTGCTGGAGCACCACGCAGTACTACCGGAGGCAGCAGCTGAATAAGCCGAAAGAAAGAAGAGCTAGTAATAGCAGTCTCAGGCTCTTTGGGGTTCAACTTAATCACCACGGCCTTTCTTCTTCTTCTTCAAGAGTGGCATGGAGTGAGGAGGAGCACCGGAAATTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTCATGCCCAAAAATATTTTCTCAGATGTCAAAATAATAGTACCACCGCCAACACTGCAACCATCAACAACCTCGACTTCAACTTTGACCCCCACAAGAAAAGACGCCGAGGTCGTCCCAGCCTTTTCGATGTCGGTAACGATCAACTTGTCTCCCCTCGTCAACTGATTGATATTAACAGTAATAATCCCAATACTGAAGCATCTGTTAAGAATCCATATCAGTACTGCTGGCCAGCCGTTCATAATTCGACGCCTCTCCAAATTGATGTTAATTTGAAGAACTCATCGTCTCAGAGTGCAGTAGCAGCAGGAGGAGGAGGACTAGACTTAGAACTTAAGCTTGCAGCAAGCATAATGCCGTTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

224

Amino Acids

25.18

Weight (kDa)

9.94

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 61 - 108 6.9e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AciI CCGC 2 cut(s) 24, 351
AcoI YGGCCR 1 cut(s) 536
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 409, 557
AfaI GTAC 3 cut(s) 71, 346, 530
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 6 cut(s) 45, 146, 180, 230, 385, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 88, 113, 235, 646
AluI AGCT 4 cut(s) 88, 113, 235, 646
Alw21I GWGCWC 2 cut(s) 62, 207
Alw26I GTCTC 3 cut(s) 131, 460, 600
AlwNI CAGNNNCTG 1 cut(s) 88
AoxI GGCC 2 cut(s) 160, 536
ApeKI GCWGC 4 cut(s) 82, 85, 611, 650
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AsuHPI GGTGA 2 cut(s) 146, 257
BalI TGGCCA 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 62, 207
BbvI GCAGC 4 cut(s) 94, 97, 623, 662
BccI CCATC 1 cut(s) 374
BceAI ACGGC 3 cut(s) 175, 527, 649
BcoDI GTCTC 3 cut(s) 131, 460, 600
BfaI CTAG 2 cut(s) 114, 629
BfrI CTTAAG 1 cut(s) 641
BglII AGATCT 1 cut(s) 284
BisI GCNGC 4 cut(s) 83, 86, 612, 651
BlsI GCNGC 4 cut(s) 84, 87, 613, 652
BmcAI AGTACT 2 cut(s) 71, 530
BmsI GCATC 2 cut(s) 267, 515
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 409, 557
BsaJI CCNNGG 2 cut(s) 157, 412
BsaWI WCCGGW 2 cut(s) 75, 207
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse1I ACTGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 157, 412
BseMII CTCAG 3 cut(s) 142, 340, 611
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 4 cut(s) 212, 215, 633, 636
BseXI GCAGC 4 cut(s) 94, 97, 623, 662
BseYI CCCAGC 2 cut(s) 235, 422
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 2 cut(s) 162, 538
BsiHKAI GWGCWC 2 cut(s) 62, 207
BsiSI CCGG 2 cut(s) 76, 208
BslFI GGGAC 2 cut(s) 41, 405
BsmAI GTCTC 3 cut(s) 131, 460, 600
BsmBI CGTCTC 1 cut(s) 600
BsmFI GGGAC 2 cut(s) 41, 405
BsnI GGCC 2 cut(s) 162, 538
Bsp1286I GDGCHC 2 cut(s) 62, 207
Bsp143I GATC 3 cut(s) 284, 297, 445
BspACI CCGC 2 cut(s) 24, 351
BspANI GGCC 2 cut(s) 162, 538
BspCNI CTCAG 3 cut(s) 141, 339, 610
BspQI GCTCTTC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 641
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 157, 412
BssMI GATC 3 cut(s) 284, 297, 445
BssNI GRCGYC 2 cut(s) 409, 557
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 409, 557
BstAFI CTTAAG 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 536, 540, 648, 655
BstDEI CTNAG 4 cut(s) 128, 326, 597, 634
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 3 cut(s) 287, 300, 448
BstMAI GTCTC 3 cut(s) 131, 460, 600
BstMBI GATC 3 cut(s) 284, 297, 445
BstMWI GCNNNNNNNGC 5 cut(s) 21, 94, 308, 359, 611
BstNSI RCATGY 1 cut(s) 15
BstV1I GCAGC 4 cut(s) 94, 97, 623, 662
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 2 cut(s) 162, 538
BtgI CCRYGG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 4 cut(s) 536, 540, 648, 655
CaiI CAGNNNCTG 1 cut(s) 88
CseI GACGC 2 cut(s) 417, 565
Csp6I GTAC 3 cut(s) 70, 345, 529
CviAII CATG 3 cut(s) 12, 189, 308
CviQI GTAC 3 cut(s) 70, 345, 529
DdeI CTNAG 4 cut(s) 128, 326, 597, 634
DpnI GATC 3 cut(s) 286, 299, 447
DpnII GATC 3 cut(s) 284, 297, 445
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 3 cut(s) 15, 192, 311
FaiI YATR 7 cut(s) 13, 190, 273, 309, 523, 549, 659
FaqI GGGAC 2 cut(s) 41, 405
FatI CATG 3 cut(s) 11, 188, 307
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 83, 86, 612, 651
Fsp4HI GCNGC 4 cut(s) 83, 86, 612, 651
FspBI CTAG 2 cut(s) 114, 629
GluI GCNGC 4 cut(s) 83, 86, 612, 651
GsaI CCCAGC 2 cut(s) 239, 426
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 162, 538
HapII CCGG 2 cut(s) 76, 208
HgaI GACGC 2 cut(s) 417, 565
Hin1I GRCGYC 2 cut(s) 409, 557
Hin1II CATG 3 cut(s) 15, 192, 311
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 2 cut(s) 34, 517
HpaII CCGG 2 cut(s) 76, 208
HphI GGTGA 2 cut(s) 146, 257
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 329, 600
Hpy188III TCNNGA 3 cut(s) 45, 180, 218
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 1 cut(s) 559
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4V TGCA 3 cut(s) 362, 605, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 94, 308, 359, 611
HpyF3I CTNAG 4 cut(s) 128, 326, 597, 634
Hsp92I GRCGYC 2 cut(s) 409, 557
Hsp92II CATG 3 cut(s) 15, 192, 311
Kzo9I GATC 3 cut(s) 284, 297, 445
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 57, 202
Lsp1109I GCAGC 4 cut(s) 94, 97, 623, 662
LweI GCATC 2 cut(s) 267, 515
MaeI CTAG 2 cut(s) 114, 629
MaeIII GTNAC 2 cut(s) 274, 440
MalI GATC 3 cut(s) 286, 299, 447
MboI GATC 3 cut(s) 284, 297, 445
MboII GAAGA 6 cut(s) 120, 159, 162, 165, 168, 595
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 62, 207
MlsI TGGCCA 1 cut(s) 538
MluCI AATT 5 cut(s) 40, 212, 550, 567, 577
MluNI TGGCCA 1 cut(s) 538
MmeI TCCRAC 1 cut(s) 314
Mox20I TGGCCA 1 cut(s) 538
MscI TGGCCA 1 cut(s) 538
MseI TTAA 5 cut(s) 150, 480, 513, 576, 642
Msp20I TGGCCA 1 cut(s) 538
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 2 cut(s) 76, 208
MwoI GCNNNNNNNGC 5 cut(s) 21, 94, 308, 359, 611
NdeII GATC 3 cut(s) 284, 297, 445
NlaIII CATG 3 cut(s) 15, 192, 311
NmeAIII GCCGAG 1 cut(s) 437
NspI RCATGY 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 2 cut(s) 34, 517
PkrI GCNGC 4 cut(s) 84, 87, 613, 652
PspFI CCCAGC 2 cut(s) 235, 422
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 3 cut(s) 71, 346, 530
RsaNI GTAC 3 cut(s) 70, 345, 529
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 5 cut(s) 150, 480, 513, 576, 642
SatI GCNGC 4 cut(s) 83, 86, 612, 651
Sau3AI GATC 3 cut(s) 284, 297, 445
ScaI AGTACT 2 cut(s) 71, 530
SduI GDGCHC 2 cut(s) 62, 207
SetI ASST 6 cut(s) 90, 115, 237, 378, 418, 648
SfaNI GCATC 2 cut(s) 267, 515
SmlI CTYRAG 2 cut(s) 218, 641
SmoI CTYRAG 2 cut(s) 218, 641
Sse9I AATT 5 cut(s) 40, 212, 550, 567, 577
SsiI CCGC 2 cut(s) 24, 351
SspI AATATT 1 cut(s) 320
SspMI CTAG 2 cut(s) 114, 629
TaaI ACNGT 1 cut(s) 485
TaqI TCGA 4 cut(s) 17, 378, 432, 554
TasI AATT 5 cut(s) 40, 212, 550, 567, 577
TatI WGTACW 2 cut(s) 69, 528
TfiI GAWTC 2 cut(s) 34, 517
Tru1I TTAA 5 cut(s) 150, 480, 513, 576, 642
Tru9I TTAA 5 cut(s) 150, 480, 513, 576, 642
TscAI CASTG 1 cut(s) 364
TseI GCWGC 4 cut(s) 82, 85, 611, 650
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 364
Vha464I CTTAAG 1 cut(s) 641
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 15
XspI CTAG 2 cut(s) 114, 629
ZrmI AGTACT 2 cut(s) 71, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.