Rh6CG512000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016767
Physical Location & Seq
Forward (+)
67117109 .. 67118009
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG512000.1

Sequence Viewer

Length: 639 bp
ATGGACTACTGCAACAGCTGGTCATCATCTTCTCCACACTTGACCAGCTGCTTATCAGGATATCGAGCTAATATAGGTATAAATAGGCACGATCAGATCTCTCGTATCAATAATGGCGGCCTTCAAGAAACAAATTATAACAAGGGAGTGGGATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAACGCTGGGTAAGGGTGACTGGAGGGGCATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAAGTTGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAAATAGTACCACCGCCAACACTGCGACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAGAAAAGATGCCGAGTTCGTCCCAGCCTTTTAGATGTCGGTAAAGATCAACTTGTCTCACCTCGTCAACTGATTGATATTAACACTGATAATCCCAATACTGAAGCATCTGTTAACAATCCATACGAGTGCTGGCCAGCCGTTCATTATTCGACGCCTCTCCGAATTGATGTTAATTTGAAGAGCTCATCATCTCAGAGTGCAGCAGCAGCAGGAGGAGGACTTGACTTAGAACTTAAGCTTGCAGTGAGCATAATGCCGTTGGGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

212

Amino Acids

23.53

Weight (kDa)

7.72

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 52 - 96 1.6e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016767)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32022
rosa_laevigata RLG00000010463 RLG00000033676
rosa_roxburghii Rroxscaffold_7G00158320
rosa_rugosa Rorug05G0152900 Rorug05G0152900 Rorug06G0382500
rosa_samantha Rh5AG247600 Rh5CG279100 Rh5DG256300 Rh6AG496500 Rh6CG512000
rosa_wichuraiana Rw5G022700 Rw6G043200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AciI CCGC 2 cut(s) 117, 312
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 515
AfaI GTAC 1 cut(s) 307
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 5 cut(s) 125, 194, 299, 346, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 18, 48, 68, 546, 601
AluI AGCT 5 cut(s) 18, 48, 68, 546, 601
Alw21I GWGCWC 2 cut(s) 171, 548
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 243
AoxI GGCC 2 cut(s) 118, 494
ApeKI GCWGC 4 cut(s) 48, 563, 566, 569
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuHPI GGTGA 3 cut(s) 221, 232, 411
BalI TGGCCA 1 cut(s) 496
BanII GRGCYC 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 171, 548
BbvI GCAGC 4 cut(s) 35, 575, 578, 581
BccI CCATC 2 cut(s) 147, 335
BceAI ACGGC 2 cut(s) 485, 604
BcoDI GTCTC 1 cut(s) 421
BfrI CTTAAG 1 cut(s) 596
BglII AGATCT 1 cut(s) 96
BisI GCNGC 5 cut(s) 49, 118, 564, 567, 570
BlsI GCNGC 5 cut(s) 50, 119, 565, 568, 571
BmsI GCATC 3 cut(s) 231, 359, 476
BpmI CTGGAG 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 515
BsaWI WCCGGW 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 218, 267
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 304, 569
BseNI ACTGG 2 cut(s) 218, 267
BseRI GAGGAG 3 cut(s) 176, 179, 591
BseXI GCAGC 4 cut(s) 35, 575, 578, 581
BseYI CCCAGC 2 cut(s) 199, 383
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 2 cut(s) 120, 496
BsiHKAI GWGCWC 2 cut(s) 171, 548
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 120, 496
Bsp1286I GDGCHC 2 cut(s) 171, 548
Bsp143I GATC 5 cut(s) 91, 96, 248, 406, 631
BspACI CCGC 2 cut(s) 117, 312
BspANI GGCC 2 cut(s) 120, 496
BspCNI CTCAG 2 cut(s) 303, 568
BspPI GGATC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 536
BspTI CTTAAG 1 cut(s) 596
BsrI ACTGG 2 cut(s) 218, 267
BssMI GATC 5 cut(s) 91, 96, 248, 406, 631
BssNI GRCGYC 1 cut(s) 515
Bst6I CTCTTC 1 cut(s) 536
BstACI GRCGYC 1 cut(s) 515
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 494, 498, 603
BstDEI CTNAG 3 cut(s) 290, 555, 589
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 5 cut(s) 94, 99, 251, 409, 634
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 5 cut(s) 91, 96, 248, 406, 631
BstMWI GCNNNNNNNGC 3 cut(s) 272, 320, 569
BstV1I GCAGC 4 cut(s) 35, 575, 578, 581
BstX2I RGATCY 2 cut(s) 96, 248
BstYI RGATCY 2 cut(s) 96, 248
BsuRI GGCC 2 cut(s) 120, 496
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 318, 612
BtsIMutI CAGTG 3 cut(s) 318, 444, 612
Cac8I GCNNGC 3 cut(s) 494, 498, 603
CseI GACGC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 272
CviJI RGCY 9 cut(s) 18, 48, 68, 120, 387, 496, 500, 546, 601
CviKI_1 RGCY 9 cut(s) 18, 48, 68, 120, 387, 496, 500, 546, 601
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 290, 555, 589
DpnI GATC 5 cut(s) 93, 98, 250, 408, 633
DpnII GATC 5 cut(s) 91, 96, 248, 406, 631
EaeI YGGCCR 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Ecl136II GAGCTC 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 548
Eco32I GATATC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 546
EcoRV GATATC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 548
FaeI CATG 1 cut(s) 275
FaiI YATR 7 cut(s) 74, 80, 138, 237, 273, 484, 614
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 366
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 5 cut(s) 49, 118, 564, 567, 570
FokI GGATG 1 cut(s) 165
FriOI GRGCYC 1 cut(s) 548
Fsp4HI GCNGC 5 cut(s) 49, 118, 564, 567, 570
GluI GCNGC 5 cut(s) 49, 118, 564, 567, 570
GsaI CCCAGC 2 cut(s) 203, 387
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 120, 496
HapII CCGG 1 cut(s) 172
HgaI GACGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 2 cut(s) 428, 475
HindII GTYRAC 2 cut(s) 428, 475
HindIII AAGCTT 1 cut(s) 599
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 1 cut(s) 172
HphI GGTGA 3 cut(s) 221, 232, 411
Hpy166II GTNNAC 2 cut(s) 428, 475
Hpy188I TCNGA 4 cut(s) 96, 293, 524, 558
Hpy188III TCNNGA 3 cut(s) 57, 125, 182
Hpy8I GTNNAC 2 cut(s) 428, 475
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 12, 563, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 320, 569
HpyF3I CTNAG 3 cut(s) 290, 555, 589
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 1 cut(s) 275
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 5 cut(s) 91, 96, 248, 406, 631
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 4 cut(s) 35, 575, 578, 581
LweI GCATC 3 cut(s) 231, 359, 476
MaeIII GTNAC 2 cut(s) 209, 238
MalI GATC 5 cut(s) 93, 98, 250, 408, 633
MboI GATC 5 cut(s) 91, 96, 248, 406, 631
MboII GAAGA 2 cut(s) 21, 553
MflI RGATCY 2 cut(s) 96, 248
MhlI GDGCHC 2 cut(s) 171, 548
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 3 cut(s) 133, 525, 535
MluNI TGGCCA 1 cut(s) 496
MnlI CCTC 9 cut(s) 154, 157, 178, 210, 347, 432, 528, 569, 572
Mox20I TGGCCA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 496
MseI TTAA 4 cut(s) 441, 474, 534, 597
MslI CAYNNNNRTG 1 cut(s) 487
Msp20I TGGCCA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 18, 48
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 272, 320, 569
NdeII GATC 5 cut(s) 91, 96, 248, 406, 631
NlaIII CATG 1 cut(s) 275
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 2 cut(s) 209, 238
PciSI GCTCTTC 1 cut(s) 536
PkrI GCNGC 5 cut(s) 50, 119, 565, 568, 571
PsiI TTATAA 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 548
PspFI CCCAGC 2 cut(s) 199, 383
PsuI RGATCY 2 cut(s) 96, 248
PvuII CAGCTG 2 cut(s) 18, 48
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 487
SacI GAGCTC 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 4 cut(s) 441, 474, 534, 597
SatI GCNGC 5 cut(s) 49, 118, 564, 567, 570
Sau3AI GATC 5 cut(s) 91, 96, 248, 406, 631
SduI GDGCHC 2 cut(s) 171, 548
SetI ASST 8 cut(s) 20, 50, 70, 79, 339, 424, 548, 603
SfaNI GCATC 3 cut(s) 231, 359, 476
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 182, 596
SmoI CTYRAG 2 cut(s) 182, 596
Sse9I AATT 3 cut(s) 133, 525, 535
SsiI CCGC 2 cut(s) 117, 312
SspI AATATT 1 cut(s) 284
SstI GAGCTC 1 cut(s) 548
TaqI TCGA 4 cut(s) 64, 339, 351, 512
TasI AATT 3 cut(s) 133, 525, 535
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 4 cut(s) 441, 474, 534, 597
Tru9I TTAA 4 cut(s) 441, 474, 534, 597
TscAI CASTG 3 cut(s) 325, 451, 612
TseFI GTSAC 2 cut(s) 209, 238
TseI GCWGC 4 cut(s) 48, 563, 566, 569
Tsp45I GTSAC 2 cut(s) 209, 238
TspDTI ATGAA 1 cut(s) 494
TspRI CASTG 3 cut(s) 325, 451, 612
Vha464I CTTAAG 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.