Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

66206528 .. 66208318

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGGTAAAAACTACAGCCCTCTCACAACTGAAAATTCTTATTGTTGTTGTCCGCCACACCCCACACCCCCCCCTTCCTCCTATCAATTAAAGTTTCTACTTTGGTTATGTTATAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAAAATTACTGGAACACCACTCTGGTGAAGAAAGCTAAACCCGAATCGAATTCCGGATCATCCAAGGAAACATCTCCCGCTCCGACCAAATTCAGGCCCAGAACGCCATCAGCTTCAGCATCAGCCACAGCCACTCAACCTCAAGTAATAAGAACCAAGGCCACTAGGTTAACCAGAATGCTAGTCCCATCACTCCCACTTCTTATCGATGATTACTCAACAACCACAAGCCCATTAGATCTTCGAGTTCCTCAAACCCAGTCGGTAAGTTCACTTCCTGAAGATGCAGCAAATACAGAAGTACACTTTCAGGGGACTGATGCAATGAACTTTGGCTGCAATGGATTTCAAGCAACTGCTGGTGAGGATGAAGATGCTATGGGAGACTACGATATTCCATTAGATGATGGAATGCTCAATGATTGGACAGGAAATGATAGCTGTGATCTTGAGAAATATGGTGCTTCATTGGATTTAGATTCCTTGGCATTTTTGCTGGACTCTGATGACTGGCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

242

Amino Acids

26.55

Weight (kDa)

4.7

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	53 - 77	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	2 cut(s)	95, 285
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	76, 256, 296
AcuI	CTGAAG	2 cut(s)	306, 507
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	557
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	173, 242, 320, 648
AluI	AGCT	4 cut(s)	173, 242, 320, 648
Alw26I	GTCTC	2 cut(s)	168, 585
AlwI	GGATC	1 cut(s)	271
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	2 cut(s)	302, 366
ApeKI	GCWGC	2 cut(s)	494, 543
ApoI	RAATTY	3 cut(s)	76, 256, 296
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	244, 581
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbvI	GCAGC	2 cut(s)	506, 530
BccI	CCATC	4 cut(s)	153, 322, 403, 608
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	168, 585
BfaI	CTAG	2 cut(s)	372, 389
BfmI	CTRYAG	1 cut(s)	55
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	2 cut(s)	495, 544
BlsI	GCNGC	2 cut(s)	496, 545
Bme1390I	CCNGG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	4 cut(s)	335, 481, 517, 571
BmuI	ACTGGG	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	333, 677
BpuMI	CCSGG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	4 cut(s)	185, 270, 363, 690
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	3 cut(s)	221, 466, 722
Bse3DI	GCAATG	2 cut(s)	537, 553
BseAI	TCCGGA	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	185, 270, 363, 690
BseGI	GGATG	2 cut(s)	266, 580
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	2 cut(s)	537, 553
BseNI	ACTGG	3 cut(s)	221, 466, 722
BseXI	GCAGC	2 cut(s)	506, 530
BseYI	CCCAGC	1 cut(s)	721
BshFI	GGCC	2 cut(s)	304, 368
BshVI	ATCGAT	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	185, 261
BslFI	GGGAC	2 cut(s)	377, 535
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	168, 585
BsmFI	GGGAC	2 cut(s)	377, 535
BsmI	GAATGC	2 cut(s)	390, 624
BsnI	GGCC	2 cut(s)	304, 368
Bso31I	GGTCTC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	263, 445, 652
BspACI	CCGC	2 cut(s)	95, 285
BspANI	GGCC	2 cut(s)	304, 368
BspDI	ATCGAT	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	260
BspPI	GGATC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	537, 553
BsrI	ACTGG	3 cut(s)	221, 466, 722
BssECI	CCNNGG	4 cut(s)	185, 270, 363, 690
BssMI	GATC	3 cut(s)	263, 445, 652
BssT1I	CCWWGG	3 cut(s)	270, 363, 690
BstF5I	GGATG	2 cut(s)	266, 580
BstKTI	GATC	3 cut(s)	266, 448, 655
BstMAI	GTCTC	2 cut(s)	168, 585
BstMBI	GATC	3 cut(s)	263, 445, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 310
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	506, 530
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	304, 368
BsuTUI	ATCGAT	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	266, 580
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	509
CviQI	GTAC	1 cut(s)	509
DpnI	GATC	3 cut(s)	265, 447, 654
DpnII	GATC	3 cut(s)	263, 445, 652
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	270, 363, 690
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	306, 507
EcoRI	GAATTC	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	270, 363, 690
ErhI	CCWWGG	3 cut(s)	270, 363, 690
FaiI	YATR	5 cut(s)	29, 151, 156, 587, 666
FaqI	GGGAC	2 cut(s)	377, 535
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	495, 544
FokI	GGATG	2 cut(s)	253, 587
Fsp4HI	GCNGC	2 cut(s)	495, 544
FspBI	CTAG	2 cut(s)	372, 389
GluI	GCNGC	2 cut(s)	495, 544
GsaI	CCCAGC	1 cut(s)	725
HaeIII	GGCC	2 cut(s)	304, 368
HapII	CCGG	2 cut(s)	185, 261
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	4 cut(s)	23, 251, 686, 707
HpaI	GTTAAC	1 cut(s)	378
HpaII	CCGG	2 cut(s)	185, 261
HphI	GGTGA	2 cut(s)	244, 581
Hpy166II	GTNNAC	3 cut(s)	378, 479, 511
Hpy188I	TCNGA	3 cut(s)	22, 291, 712
Hpy188III	TCNNGA	3 cut(s)	261, 485, 656
Hpy8I	GTNNAC	3 cut(s)	378, 479, 511
HpyAV	CCTTC	2 cut(s)	126, 171
HpyCH4V	TGCA	3 cut(s)	494, 530, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 310
Kpn2I	TCCGGA	1 cut(s)	260
KspAI	GTTAAC	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	263, 445, 652
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	506, 530
LweI	GCATC	4 cut(s)	335, 481, 517, 571
MaeI	CTAG	2 cut(s)	372, 389
MalI	GATC	3 cut(s)	265, 447, 654
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	3 cut(s)	263, 445, 652
MboII	GAAGA	7 cut(s)	16, 19, 25, 247, 440, 500, 590
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	5 cut(s)	76, 128, 211, 256, 296
MlyI	GAGTC	2 cut(s)	17, 701
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	72, 130, 357, 468, 565
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	2 cut(s)	131, 377
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	2 cut(s)	185, 261
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	2 cut(s)	390, 624
MwoI	GCNNNNNNNGC	2 cut(s)	187, 310
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	263, 445, 652
OliI	CACNNNNGTG	1 cut(s)	230
PctI	GAATGC	2 cut(s)	390, 624
PfeI	GAWTC	2 cut(s)	251, 686
PkrI	GCNGC	2 cut(s)	496, 545
PleI	GAGTC	2 cut(s)	17, 701
PpsI	GAGTC	2 cut(s)	17, 701
PspFI	CCCAGC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	131, 377
SatI	GCNGC	2 cut(s)	495, 544
Sau3AI	GATC	3 cut(s)	263, 445, 652
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	17, 701
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	7 cut(s)	49, 175, 244, 322, 349, 377, 650
SfaNI	GCATC	4 cut(s)	335, 481, 517, 571
SfcI	CTRYAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	348, 656
SmoI	CTYRAG	2 cut(s)	348, 656
Sse9I	AATT	5 cut(s)	76, 128, 211, 256, 296
SsiI	CCGC	2 cut(s)	95, 285
SspMI	CTAG	2 cut(s)	372, 389
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	3 cut(s)	270, 363, 690
TaqI	TCGA	3 cut(s)	254, 414, 451
TasI	AATT	5 cut(s)	76, 128, 211, 256, 296
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	251, 686
Tru1I	TTAA	2 cut(s)	131, 377
Tru9I	TTAA	2 cut(s)	131, 377
TseI	GCWGC	2 cut(s)	494, 543
TspDTI	ATGAA	5 cut(s)	17, 216, 548, 591, 663
XapI	RAATTY	3 cut(s)	76, 256, 296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	2 cut(s)	372, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.