Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Forward (+)

23928630 .. 23930235

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGGAGGAGTCCATGTTGCTTCAAGCAGGAAGGACTTAACAGAGGAGCCTGGACTGCCTTGGAAGATAAAGTACTAACATCTTACATCAAAGCTCACGGAGAAGGCAAATGGAGGAACCTCCCGAAGAGAGCTGGTTTGAAGAGATGTGGTAAGAGCTGTAGGCTGAGATGGTTAAACTATCTCAGGCCAGACATAAAGAGAGGTAACATATCCGGGGATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGATGGTCTCTGATAGCTGGAAGGCTACCGGGCCGAACAGACAATGAAATCAAGAACTACTGGAACACCACTCTGGCAAAGAAAGCAAAACCCGAATCGCATTCCGGATCATCCAAGGAAACATCTCCCGCTCCGACCAGATTCAGGCCCAGAAAGGCATCAGCCGCAGCCACTACTCAACCTCAAGTGATAAGAACCAAGGCCACTAGGTTAACCAGAATGCCAGTCCCGTCACTCCCACTTCTTATCGATGATTGTTCAACATCCACAACCGCATTAGAGCTTCAAGTTCCTCAAACCCAGTTGGTAAGTTCACTTCCTGAAGATGCAGTAAACACACAAGTATACTTTCAGGGGACTGATGCCATGAACTTTGGCTGCAATGGATTTCAAGCAACTGCTGGTGATGATGAAGATGCTAAGGGAGACTACGATATTCCATTAGATGATGGAATGCTCAATGACTGGACGGGAAATGGGAACTGTGATCTTGAGAACTATGGTGCTTCACTAGATTTAGATTCCTTGTCATTTTTGCTTGATTCTGATGACTGGCTGGGCCAGGAAAATAGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.02

Weight (kDa)

6.34

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	1e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 118	6.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	609
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	3 cut(s)	393, 429, 537
AclWI	GGATC	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	25, 142, 525, 551, 656
AjnI	CCWGG	2 cut(s)	50, 825
AluBI	AGCT	5 cut(s)	95, 134, 159, 281, 547
AluI	AGCT	5 cut(s)	95, 134, 159, 281, 547
Alw26I	GTCTC	2 cut(s)	276, 684
AlwI	GGATC	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	5 cut(s)	188, 295, 410, 465, 823
ApeKI	GCWGC	2 cut(s)	431, 642
AspS9I	GGNCC	3 cut(s)	295, 411, 823
AsuC2I	CCSGG	2 cut(s)	217, 294
AsuHPI	GGTGA	1 cut(s)	680
BarI	GAAGNNNNNNTAC	4 cut(s)	57, 89, 564, 596
BbvI	GCAGC	2 cut(s)	443, 629
BccI	CCATC	3 cut(s)	165, 261, 707
BciT130I	CCWGG	2 cut(s)	52, 827
BcnI	CCSGG	2 cut(s)	217, 294
BcoDI	GTCTC	2 cut(s)	276, 684
BfaI	CTAG	2 cut(s)	471, 776
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	3 cut(s)	429, 432, 643
BlsI	GCNGC	3 cut(s)	430, 433, 644
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	4 cut(s)	52, 217, 294, 827
BmgT120I	GGNCC	3 cut(s)	295, 411, 823
BmiI	GGNNCC	2 cut(s)	49, 119
BmrFI	CCNGG	4 cut(s)	52, 217, 294, 827
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	4 cut(s)	431, 580, 616, 670
BmuI	ACTGGG	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	432, 776
BpuMI	CCSGG	2 cut(s)	217, 294
Bsa29I	ATCGAT	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	60, 216, 378, 462
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	5 cut(s)	329, 488, 565, 734, 821
Bse3DI	GCAATG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	52, 827
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	4 cut(s)	60, 216, 378, 462
BseGI	GGATG	3 cut(s)	226, 374, 527
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	158, 199
BseNI	ACTGG	5 cut(s)	329, 488, 565, 734, 821
BseRI	GAGGAG	2 cut(s)	22, 60
BseXI	GCAGC	2 cut(s)	443, 629
BseYI	CCCAGC	1 cut(s)	820
BshFI	GGCC	5 cut(s)	190, 297, 412, 467, 825
BshVI	ATCGAT	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	216, 293, 369
BslFI	GGGAC	2 cut(s)	476, 634
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	276, 684
BsmFI	GGGAC	2 cut(s)	476, 634
BsmI	GAATGC	3 cut(s)	364, 489, 723
BsnI	GGCC	5 cut(s)	190, 297, 412, 467, 825
Bso31I	GGTCTC	1 cut(s)	276
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	371, 751
BspACI	CCGC	3 cut(s)	393, 429, 537
BspANI	GGCC	5 cut(s)	190, 297, 412, 467, 825
BspCNI	CTCAG	2 cut(s)	159, 198
BspDI	ATCGAT	1 cut(s)	513
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	49, 119
BspPI	GGATC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	5 cut(s)	329, 488, 565, 734, 821
BssECI	CCNNGG	4 cut(s)	60, 216, 378, 462
BssMI	GATC	2 cut(s)	371, 751
BssNAI	GTATAC	1 cut(s)	610
BssT1I	CCWWGG	3 cut(s)	60, 378, 462
Bst1107I	GTATAC	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	52, 827
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	2 cut(s)	122, 137
BstDEI	CTNAG	3 cut(s)	167, 185, 684
BstF5I	GGATG	3 cut(s)	226, 374, 527
BstKTI	GATC	2 cut(s)	374, 754
BstMAI	GTCTC	2 cut(s)	276, 684
BstMBI	GATC	2 cut(s)	371, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 347, 428
BstNI	CCWGG	2 cut(s)	52, 827
BstSCI	CCNGG	4 cut(s)	50, 215, 292, 825
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	443, 629
BstZ17I	GTATAC	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	5 cut(s)	190, 297, 412, 467, 825
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	3 cut(s)	226, 374, 527
Cfr13I	GGNCC	3 cut(s)	295, 411, 823
ClaI	ATCGAT	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	15, 631
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	167, 185, 684
DpnI	GATC	2 cut(s)	373, 753
DpnII	GATC	2 cut(s)	371, 751
Eam1104I	CTCTTC	2 cut(s)	122, 137
EarI	CTCTTC	2 cut(s)	122, 137
Eco130I	CCWWGG	3 cut(s)	60, 378, 462
Eco31I	GGTCTC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	50, 825
EcoT14I	CCWWGG	3 cut(s)	60, 378, 462
ErhI	CCWWGG	3 cut(s)	60, 378, 462
FaeI	CATG	2 cut(s)	18, 634
FaiI	YATR	7 cut(s)	16, 197, 212, 249, 610, 632, 765
FaqI	GGGAC	2 cut(s)	476, 634
FatI	CATG	2 cut(s)	14, 630
FauI	CCCGC	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	3 cut(s)	429, 432, 643
FokI	GGATG	3 cut(s)	233, 361, 514
Fsp4HI	GCNGC	3 cut(s)	429, 432, 643
FspBI	CTAG	2 cut(s)	471, 776
GluI	GCNGC	3 cut(s)	429, 432, 643
GsaI	CCCAGC	1 cut(s)	824
HaeIII	GGCC	5 cut(s)	190, 297, 412, 467, 825
HapII	CCGG	3 cut(s)	216, 293, 369
Hin1II	CATG	2 cut(s)	18, 634
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	6 cut(s)	10, 243, 359, 405, 785, 806
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	3 cut(s)	216, 293, 369
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	4 cut(s)	477, 578, 598, 610
Hpy188I	TCNGA	4 cut(s)	242, 276, 399, 811
Hpy188III	TCNNGA	5 cut(s)	124, 316, 369, 584, 755
Hpy8I	GTNNAC	4 cut(s)	477, 578, 598, 610
HpyAV	CCTTC	3 cut(s)	26, 98, 279
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4V	TGCA	2 cut(s)	593, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 347, 428
HpyF3I	CTNAG	3 cut(s)	167, 185, 684
Hsp92II	CATG	2 cut(s)	18, 634
Kpn2I	TCCGGA	1 cut(s)	368
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	371, 751
LmnI	GCTCC	2 cut(s)	47, 400
Lsp1109I	GCAGC	2 cut(s)	443, 629
LweI	GCATC	4 cut(s)	431, 580, 616, 670
MaeI	CTAG	2 cut(s)	471, 776
MaeIII	GTNAC	2 cut(s)	206, 495
MalI	GATC	2 cut(s)	373, 753
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	2 cut(s)	371, 751
MboII	GAAGA	8 cut(s)	77, 139, 154, 236, 239, 245, 599, 689
MlyI	GAGTC	2 cut(s)	19, 237
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	6 cut(s)	38, 108, 131, 197, 456, 567
MroI	TCCGGA	1 cut(s)	368
MseI	TTAA	3 cut(s)	39, 176, 476
MspI	CCGG	3 cut(s)	216, 293, 369
MspR9I	CCNGG	4 cut(s)	52, 217, 294, 827
Mva1269I	GAATGC	3 cut(s)	364, 489, 723
MvaI	CCWGG	2 cut(s)	52, 827
MwoI	GCNNNNNNNGC	3 cut(s)	56, 347, 428
NciI	CCSGG	2 cut(s)	217, 294
NdeII	GATC	2 cut(s)	371, 751
NlaIII	CATG	2 cut(s)	18, 634
NlaIV	GGNNCC	2 cut(s)	49, 119
NmuCI	GTSAC	1 cut(s)	495
PctI	GAATGC	3 cut(s)	364, 489, 723
PfeI	GAWTC	4 cut(s)	359, 405, 785, 806
PkrI	GCNGC	3 cut(s)	430, 433, 644
PleI	GAGTC	2 cut(s)	18, 237
PpsI	GAGTC	2 cut(s)	18, 237
Psp6I	CCWGG	2 cut(s)	50, 825
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	2 cut(s)	50, 825
PspN4I	GGNNCC	2 cut(s)	49, 119
PspPI	GGNCC	3 cut(s)	295, 411, 823
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	39, 176, 476
SatI	GCNGC	3 cut(s)	429, 432, 643
Sau3AI	GATC	2 cut(s)	371, 751
Sau96I	GGNCC	3 cut(s)	295, 411, 823
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	2 cut(s)	19, 237
ScrFI	CCNGG	4 cut(s)	52, 217, 294, 827
SetI	ASST	9 cut(s)	97, 123, 136, 161, 208, 283, 448, 476, 549
SfaNI	GCATC	4 cut(s)	431, 580, 616, 670
SfcI	CTRYAG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	447, 755
SmoI	CTYRAG	2 cut(s)	447, 755
SsiI	CCGC	3 cut(s)	393, 429, 537
SspMI	CTAG	2 cut(s)	471, 776
StyD4I	CCNGG	4 cut(s)	50, 215, 292, 825
StyI	CCWWGG	3 cut(s)	60, 378, 462
TaaI	ACNGT	1 cut(s)	749
TaqI	TCGA	1 cut(s)	513
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	359, 405, 785, 806
Tru1I	TTAA	3 cut(s)	39, 176, 476
Tru9I	TTAA	3 cut(s)	39, 176, 476
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	2 cut(s)	431, 642
Tsp45I	GTSAC	1 cut(s)	495
TspDTI	ATGAA	4 cut(s)	237, 324, 647, 690
TspGWI	ACGGA	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	2 cut(s)	471, 776
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.