Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Forward (+)

1201633 .. 1202688

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGAGGAGTCCATGTTGCTCCAAGGAAGGACTTAACAGAGGAGCTTGGACTGCCTTGGAAGATAAAGTACTAACGTCTTACATCAAAGCCCATGGAGAAGGCAAATGGAGAAACCTCCCAAAGAGAGCTGGTTTGAAGAGATGTGGTAAGAGCTGTAGACTGAGATGGTTAAACTATCTGAGGCCAGACATAAAGAGAGGTAATATATCCGGGGATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAAAATTACTGGAACACCACTCTGGTGAAGAAAGCTAAACCCGAATCGCATTCCGGATCATCCAAGGAAACATCTCCCGCTCCGACCAAATTCAGGCCCAGAACGCCATCAGCTTCAGCATCAGCCACAGCCACTCAACCTCAAGTAATAAGAACCAAGGCCACTAGGTTAACCAGAATGCTAGTCCCATCACTCCCACTTCTTATCGATGATTACTCAACAACCACAAGCCCATTAGATCTTCGAGTTCCTCAAACCCGGTCGGTAAGTTCACTTCCTGAAGATGCAGCAAATACAGAAGTACACATTCAGGGGACTGATGCAATGAACTTTGGCTGCAATGGATTTCAAGCAACTGCTGGTGAGGATGAAGATGCTATGGGAGACTACGATATTCCATTAGATGATGGAATGCTCAATGATTGGACAGGAAATGATAACTGTGATCTTGAGAAATATGATGCTTCATTGGATTTAGATTCCTTGGCATTTTTGCTGGACTCTGATGACTGGCTGGGCCGAGAAAATAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.27

Weight (kDa)

6.14

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	1.9e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 117	5.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	411, 612
AfaI	GTAC	2 cut(s)	72, 615
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	139, 662
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	6 cut(s)	47, 131, 156, 278, 347, 425
AluI	AGCT	6 cut(s)	47, 131, 156, 278, 347, 425
Alw26I	GTCTC	2 cut(s)	273, 690
AlwI	GGATC	1 cut(s)	376
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	4 cut(s)	185, 407, 471, 829
ApeKI	GCWGC	2 cut(s)	599, 648
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	408, 829
AsuC2I	CCSGG	3 cut(s)	214, 291, 571
AsuHPI	GGTGA	2 cut(s)	349, 686
BarI	GAAGNNNNNNTAC	4 cut(s)	54, 86, 570, 602
BbvI	GCAGC	2 cut(s)	611, 635
BccI	CCATC	5 cut(s)	162, 258, 427, 508, 713
BcnI	CCSGG	3 cut(s)	214, 291, 571
BcoDI	GTCTC	2 cut(s)	273, 690
BfaI	CTAG	2 cut(s)	477, 494
BfmI	CTRYAG	1 cut(s)	157
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	600, 649
BlsI	GCNGC	2 cut(s)	601, 650
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	3 cut(s)	214, 291, 571
BmgT120I	GGNCC	2 cut(s)	408, 829
BmrFI	CCNGG	3 cut(s)	214, 291, 571
BmsI	GCATC	5 cut(s)	440, 586, 622, 676, 763
BpuEI	CTTGAG	2 cut(s)	438, 782
BpuMI	CCSGG	3 cut(s)	214, 291, 571
Bsa29I	ATCGAT	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 468, 795
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	326, 827
Bse3DI	GCAATG	2 cut(s)	642, 658
BseAI	TCCGGA	1 cut(s)	365
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 468, 795
BseGI	GGATG	3 cut(s)	223, 371, 685
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	2 cut(s)	642, 658
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	2 cut(s)	326, 827
BseRI	GAGGAG	2 cut(s)	22, 57
BseXI	GCAGC	2 cut(s)	611, 635
BseYI	CCCAGC	1 cut(s)	826
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	4 cut(s)	187, 409, 473, 831
BshVI	ATCGAT	1 cut(s)	519
BsiEI	CGRYCG	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	213, 290, 366, 571
BslFI	GGGAC	2 cut(s)	482, 640
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	2 cut(s)	273, 690
BsmFI	GGGAC	2 cut(s)	482, 640
BsmI	GAATGC	3 cut(s)	361, 495, 729
BsnI	GGCC	4 cut(s)	187, 409, 473, 831
Bso31I	GGTCTC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	368, 550, 757
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	4 cut(s)	187, 409, 473, 831
BspCNI	CTCAG	2 cut(s)	156, 174
BspDI	ATCGAT	1 cut(s)	519
BspEI	TCCGGA	1 cut(s)	365
BspPI	GGATC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	642, 658
BsrI	ACTGG	2 cut(s)	326, 827
BssECI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 468, 795
BssMI	GATC	3 cut(s)	368, 550, 757
BssT1I	CCWWGG	6 cut(s)	24, 57, 94, 375, 468, 795
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	223, 371, 685
BstKTI	GATC	3 cut(s)	371, 553, 760
BstMAI	GTCTC	2 cut(s)	273, 690
BstMBI	GATC	3 cut(s)	368, 550, 757
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
BstSCI	CCNGG	3 cut(s)	212, 289, 569
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	611, 635
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	187, 409, 473, 831
BsuTUI	ATCGAT	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	223, 371, 685
Cfr13I	GGNCC	2 cut(s)	408, 829
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	71, 614
CviAII	CATG	2 cut(s)	15, 95
CviQI	GTAC	2 cut(s)	71, 614
DdeI	CTNAG	2 cut(s)	164, 182
DpnI	GATC	3 cut(s)	370, 552, 759
DpnII	GATC	3 cut(s)	368, 550, 757
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	6 cut(s)	24, 57, 94, 375, 468, 795
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	411, 612
EcoT14I	CCWWGG	6 cut(s)	24, 57, 94, 375, 468, 795
ErhI	CCWWGG	6 cut(s)	24, 57, 94, 375, 468, 795
FaeI	CATG	2 cut(s)	18, 98
FaiI	YATR	7 cut(s)	16, 96, 194, 209, 246, 692, 771
FaqI	GGGAC	2 cut(s)	482, 640
FatI	CATG	2 cut(s)	14, 94
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	600, 649
FokI	GGATG	3 cut(s)	230, 358, 692
Fsp4HI	GCNGC	2 cut(s)	600, 649
FspBI	CTAG	2 cut(s)	477, 494
GluI	GCNGC	2 cut(s)	600, 649
GsaI	CCCAGC	1 cut(s)	830
HaeIII	GGCC	4 cut(s)	187, 409, 473, 831
HapII	CCGG	4 cut(s)	213, 290, 366, 571
Hin1II	CATG	2 cut(s)	18, 98
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	5 cut(s)	10, 240, 356, 791, 812
HpaI	GTTAAC	1 cut(s)	483
HpaII	CCGG	4 cut(s)	213, 290, 366, 571
HphI	GGTGA	2 cut(s)	349, 686
Hpy166II	GTNNAC	4 cut(s)	161, 483, 584, 616
Hpy188I	TCNGA	4 cut(s)	183, 239, 396, 817
Hpy188III	TCNNGA	3 cut(s)	366, 590, 761
Hpy8I	GTNNAC	4 cut(s)	161, 483, 584, 616
HpyAV	CCTTC	3 cut(s)	23, 95, 276
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	599, 635, 651
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
HpyF3I	CTNAG	2 cut(s)	164, 182
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	18, 98
Kpn2I	TCCGGA	1 cut(s)	365
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	368, 550, 757
LmnI	GCTCC	3 cut(s)	26, 44, 397
Lsp1109I	GCAGC	2 cut(s)	611, 635
LweI	GCATC	5 cut(s)	440, 586, 622, 676, 763
MaeI	CTAG	2 cut(s)	477, 494
MaeII	ACGT	1 cut(s)	77
MalI	GATC	3 cut(s)	370, 552, 759
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	3 cut(s)	368, 550, 757
MboII	GAAGA	9 cut(s)	74, 151, 233, 236, 242, 352, 545, 605, 695
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	2 cut(s)	316, 401
MlyI	GAGTC	3 cut(s)	19, 234, 806
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	35, 128, 177, 194, 462, 573, 670
MroI	TCCGGA	1 cut(s)	365
MseI	TTAA	4 cut(s)	36, 173, 482, 847
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	4 cut(s)	213, 290, 366, 571
MspR9I	CCNGG	3 cut(s)	214, 291, 571
Mva1269I	GAATGC	3 cut(s)	361, 495, 729
MwoI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
NciI	CCSGG	3 cut(s)	214, 291, 571
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	368, 550, 757
NlaIII	CATG	2 cut(s)	18, 98
OliI	CACNNNNGTG	1 cut(s)	335
PctI	GAATGC	3 cut(s)	361, 495, 729
PfeI	GAWTC	2 cut(s)	356, 791
PkrI	GCNGC	2 cut(s)	601, 650
PleI	GAGTC	3 cut(s)	18, 234, 806
PpsI	GAGTC	3 cut(s)	18, 234, 806
PspFI	CCCAGC	1 cut(s)	826
PspPI	GGNCC	2 cut(s)	408, 829
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	72, 615
RsaNI	GTAC	2 cut(s)	71, 614
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	36, 173, 482, 847
SatI	GCNGC	2 cut(s)	600, 649
Sau3AI	GATC	3 cut(s)	368, 550, 757
Sau96I	GGNCC	2 cut(s)	408, 829
ScaI	AGTACT	1 cut(s)	72
SchI	GAGTC	3 cut(s)	19, 234, 806
ScrFI	CCNGG	3 cut(s)	214, 291, 571
SfaNI	GCATC	5 cut(s)	440, 586, 622, 676, 763
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	453, 761
SmoI	CTYRAG	2 cut(s)	453, 761
Sse9I	AATT	2 cut(s)	316, 401
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	477, 494
StyD4I	CCNGG	3 cut(s)	212, 289, 569
StyI	CCWWGG	6 cut(s)	24, 57, 94, 375, 468, 795
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	519, 556
TasI	AATT	2 cut(s)	316, 401
TatI	WGTACW	2 cut(s)	70, 613
TfiI	GAWTC	2 cut(s)	356, 791
Tru1I	TTAA	4 cut(s)	36, 173, 482, 847
Tru9I	TTAA	4 cut(s)	36, 173, 482, 847
TseI	GCWGC	2 cut(s)	599, 648
TspDTI	ATGAA	5 cut(s)	234, 321, 653, 696, 768
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	477, 494
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.