Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

5587087 .. 5588510

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1070700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAAGGAGTCCGTGTTGCTCCAAGGAAGGACTCAACAGAGGAGCCTGGACTGCCTTGGAAGATAAAATTTTATCATCTTACATCAAAGCTCATGGAGAAGGAAAATGGAGAAGCCTCCCTAAAAGAGCTGGTCTGAAGAGATGTGGTAAAAGTTGTAGACTTAGATGGTTAAACTATCTGAGACCAGACATAAAGAGAGGCAACATTTCAGGTGATGAAGAAGAACTCATTGTCAGGCTCCATAACCTTCTTGGTAACAGATGGTCCTTAATAGCCGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAGAATTACTGGAATACAACTTTGGGGAAGAAATCGAAAGTCGATTCGTTTTCTGGATCCTCGAAAGAAACTTCTCTAAATCCATGCAAATCCATAGCGAAAAAGAAAGATGTCGAGTCCAAAACATCAACTGCCGCTGCTCAACCTCTAGTAATAAGAACCAAGGCCACTAGGTTGACCAAAATTTTAGTCCCACAAAATATTCCTAGTGACGAAAATTATACAGCAGCTGCCGCAAACCCATTAGAGCTTCAGACCCAATCGGCGGAAAAAGGCGGAAGCACCGAAGAGTTTCCGAGGACTAATGCAGGTGACTGCAGCAACATCTTGAAGAACTTTGGCTGCGATGATGACGACATTGATGCGAAGGGAGATCAATACTGCAACGAGTTTCAGTTGCTCAACTCTATACCGTTGGATGAGGCAATGATAAATGACGGCTGCTGGACGGGAGGAAACGGTTGCGATCTGGAGGACTACGGTGCCTCGTTGGATTTAGATTCTTTGGCATTCTTGCTTGACTCTGAGGAATGGCCTTCCCAAGAAAATGTTGTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

291

Amino Acids

31.96

Weight (kDa)

5.9

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	5.3e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.5e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	4 cut(s)	447, 546, 578, 588
AclWI	GGATC	2 cut(s)	363, 376
AcsI	RAATTY	2 cut(s)	69, 495
AcuI	CTGAAG	2 cut(s)	158, 548
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	4 cut(s)	92, 131, 542, 562
AluI	AGCT	4 cut(s)	92, 131, 542, 562
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	363, 376
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	477, 845
ApeKI	GCWGC	6 cut(s)	449, 539, 542, 630, 654, 753
ApoI	RAATTY	2 cut(s)	69, 495
ArsI	GACNNNNNNTTYG	2 cut(s)	486, 518
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	227, 635
AvaII	GGWCC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	794
BbvI	GCAGC	6 cut(s)	436, 529, 551, 641, 642, 740
BccI	CCATC	2 cut(s)	162, 258
BceAI	ACGGC	1 cut(s)	766
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	461, 483, 519
BfmI	CTRYAG	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	8 cut(s)	447, 450, 540, 543, 546, 631, 655, 754
BlsI	GCNGC	8 cut(s)	448, 451, 541, 544, 547, 632, 656, 755
Bme1390I	CCNGG	2 cut(s)	49, 291
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	4 cut(s)	46, 242, 370, 796
BmrFI	CCNGG	2 cut(s)	49, 291
BmsI	GCATC	1 cut(s)	664
BpmI	CTGGAG	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	5 cut(s)	24, 57, 290, 474, 608
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	5 cut(s)	24, 57, 290, 474, 608
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	173, 828
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	6 cut(s)	436, 529, 551, 641, 642, 740
BshFI	GGCC	2 cut(s)	479, 847
BshNI	GGYRCC	1 cut(s)	794
BsiSI	CCGG	2 cut(s)	279, 290
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	479, 847
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	368, 685, 778
BspACI	CCGC	4 cut(s)	447, 546, 578, 588
BspANI	GGCC	2 cut(s)	479, 847
BspCNI	CTCAG	2 cut(s)	174, 829
BspLI	GGNNCC	4 cut(s)	46, 242, 370, 796
BspMAI	CTGCAG	1 cut(s)	632
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	363, 376
BspT107I	GGYRCC	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	5 cut(s)	24, 57, 290, 474, 608
BssMI	GATC	3 cut(s)	368, 685, 778
BssT1I	CCWWGG	3 cut(s)	24, 57, 474
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	726, 773, 794
Bst6I	CTCTTC	2 cut(s)	134, 594
BstDEI	CTNAG	3 cut(s)	164, 182, 837
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	3 cut(s)	371, 688, 781
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	368, 685, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 292, 545
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 289
BstSFI	CTRYAG	1 cut(s)	628
BstV1I	GCAGC	6 cut(s)	436, 529, 551, 641, 642, 740
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	479, 847
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	267
CviAII	CATG	2 cut(s)	95, 396
DdeI	CTNAG	3 cut(s)	164, 182, 837
DpnI	GATC	3 cut(s)	370, 687, 780
DpnII	GATC	3 cut(s)	368, 685, 778
Eam1104I	CTCTTC	2 cut(s)	134, 594
EarI	CTCTTC	2 cut(s)	134, 594
EciI	GGCGGA	2 cut(s)	593, 603
Eco130I	CCWWGG	3 cut(s)	24, 57, 474
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	158, 548
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	3 cut(s)	24, 57, 474
ErhI	CCWWGG	3 cut(s)	24, 57, 474
FaeI	CATG	2 cut(s)	98, 399
FaiI	YATR	7 cut(s)	96, 194, 246, 397, 407, 534, 722
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	94, 395
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	8 cut(s)	447, 450, 540, 543, 546, 631, 655, 754
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	8 cut(s)	447, 450, 540, 543, 546, 631, 655, 754
FspBI	CTAG	3 cut(s)	461, 483, 519
GluI	GCNGC	8 cut(s)	447, 450, 540, 543, 546, 631, 655, 754
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	2 cut(s)	479, 847
HapII	CCGG	2 cut(s)	279, 290
Hin1II	CATG	2 cut(s)	98, 399
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	6 cut(s)	10, 33, 356, 428, 812, 833
HpaII	CCGG	2 cut(s)	279, 290
HphI	GGTGA	2 cut(s)	227, 635
Hpy166II	GTNNAC	2 cut(s)	161, 489
Hpy188I	TCNGA	5 cut(s)	138, 183, 567, 609, 838
Hpy188III	TCNNGA	4 cut(s)	313, 366, 640, 782
Hpy8I	GTNNAC	2 cut(s)	161, 489
HpyAV	CCTTC	6 cut(s)	23, 95, 260, 276, 673, 858
HpyCH4III	ACNGT	3 cut(s)	726, 773, 794
HpyCH4V	TGCA	4 cut(s)	399, 620, 630, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 292, 545
HpyF3I	CTNAG	3 cut(s)	164, 182, 837
Hsp92II	CATG	2 cut(s)	98, 399
Kzo9I	GATC	3 cut(s)	368, 685, 778
LmnI	GCTCC	3 cut(s)	26, 44, 246
Lsp1109I	GCAGC	6 cut(s)	436, 529, 551, 641, 642, 740
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	3 cut(s)	461, 483, 519
MaeIII	GTNAC	3 cut(s)	257, 521, 623
MalI	GATC	3 cut(s)	370, 687, 780
MboI	GATC	3 cut(s)	368, 685, 778
MboII	GAAGA	7 cut(s)	74, 151, 233, 236, 352, 611, 655
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	4 cut(s)	69, 316, 495, 529
MlyI	GAGTC	4 cut(s)	19, 27, 437, 827
MmeI	TCCRAC	2 cut(s)	708, 783
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	2 cut(s)	173, 272
MspA1I	CMGCKG	2 cut(s)	449, 542
MspI	CCGG	2 cut(s)	279, 290
MspR9I	CCNGG	2 cut(s)	49, 291
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	53, 292, 545
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	368, 685, 778
NlaIII	CATG	2 cut(s)	98, 399
NlaIV	GGNNCC	4 cut(s)	46, 242, 370, 796
NmuCI	GTSAC	2 cut(s)	521, 623
PaqCI	CACCTGC	1 cut(s)	611
PctI	GAATGC	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	356, 812
PkrI	GCNGC	8 cut(s)	448, 451, 541, 544, 547, 632, 656, 755
PleI	GAGTC	4 cut(s)	18, 27, 436, 827
PpsI	GAGTC	4 cut(s)	18, 27, 436, 827
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	4 cut(s)	46, 242, 370, 796
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	632
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	173, 272
SatI	GCNGC	8 cut(s)	447, 450, 540, 543, 546, 631, 655, 754
Sau3AI	GATC	3 cut(s)	368, 685, 778
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	4 cut(s)	19, 27, 437, 827
ScrFI	CCNGG	2 cut(s)	49, 291
SetI	ASST	9 cut(s)	94, 133, 217, 252, 460, 488, 544, 564, 625
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	4 cut(s)	69, 316, 495, 529
SsiI	CCGC	4 cut(s)	447, 546, 578, 588
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	461, 483, 519
StyD4I	CCNGG	2 cut(s)	47, 289
StyI	CCWWGG	3 cut(s)	24, 57, 474
TaaI	ACNGT	3 cut(s)	726, 773, 794
TaqI	TCGA	4 cut(s)	347, 354, 374, 426
TasI	AATT	4 cut(s)	69, 316, 495, 529
TauI	GCSGC	2 cut(s)	449, 548
TfiI	GAWTC	2 cut(s)	356, 812
Tru1I	TTAA	2 cut(s)	173, 272
Tru9I	TTAA	2 cut(s)	173, 272
TseFI	GTSAC	2 cut(s)	521, 623
TseI	GCWGC	6 cut(s)	449, 539, 542, 630, 654, 753
Tsp45I	GTSAC	2 cut(s)	521, 623
TspDTI	ATGAA	2 cut(s)	234, 321
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	2 cut(s)	69, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	3 cut(s)	461, 483, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.