transcription, DNA-templated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31100 |
| malus_domestica | MD08G1070700.v1.1 MD15G1051400.v1.1 |
| prunus_persica | Prupe.1G405400_v2.0.a1 |
| pyrus_communis | pycom08g05850 |
| rosa_chinensis | RchiOBHm_Chr6g0311681 |
| rosa_laevigata | RLG00000010382 |
| rosa_multiflora | Rmu_sc0002888.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00157390 |
| rosa_rugosa | Rorug06G0390900 |
| rosa_samantha | Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500 |
| rosa_wichuraiana | Rw6G044030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AgsI | TTSAA | 1 cut(s) | 173 |
| AluBI | AGCT | 1 cut(s) | 264 |
| AluI | AGCT | 1 cut(s) | 264 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| ApeKI | GCWGC | 2 cut(s) | 110, 159 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 81, 113 |
| BbvI | GCAGC | 2 cut(s) | 122, 146 |
| BccI | CCATC | 2 cut(s) | 19, 224 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BglII | AGATCT | 1 cut(s) | 61 |
| BisI | GCNGC | 2 cut(s) | 111, 160 |
| BlsI | GCNGC | 2 cut(s) | 112, 161 |
| BmrI | ACTGGG | 1 cut(s) | 76 |
| BmsI | GCATC | 3 cut(s) | 97, 133, 187 |
| BmuI | ACTGGG | 1 cut(s) | 76 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 1 cut(s) | 306 |
| Bse1I | ACTGG | 2 cut(s) | 82, 338 |
| Bse3DI | GCAATG | 2 cut(s) | 153, 169 |
| BseDI | CCNNGG | 1 cut(s) | 306 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseMI | GCAATG | 2 cut(s) | 153, 169 |
| BseNI | ACTGG | 2 cut(s) | 82, 338 |
| BseXI | GCAGC | 2 cut(s) | 122, 146 |
| BseYI | CCCAGC | 1 cut(s) | 337 |
| BslFI | GGGAC | 1 cut(s) | 151 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| BsmFI | GGGAC | 1 cut(s) | 151 |
| BsmI | GAATGC | 1 cut(s) | 240 |
| Bsp143I | GATC | 2 cut(s) | 61, 268 |
| BsrDI | GCAATG | 2 cut(s) | 153, 169 |
| BsrI | ACTGG | 2 cut(s) | 82, 338 |
| BssECI | CCNNGG | 1 cut(s) | 306 |
| BssMI | GATC | 2 cut(s) | 61, 268 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstKTI | GATC | 2 cut(s) | 64, 271 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 2 cut(s) | 61, 268 |
| BstV1I | GCAGC | 2 cut(s) | 122, 146 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CviJI | RGCY | 5 cut(s) | 54, 159, 264, 337, 342 |
| CviKI_1 | RGCY | 5 cut(s) | 54, 159, 264, 337, 342 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DpnI | GATC | 2 cut(s) | 63, 270 |
| DpnII | GATC | 2 cut(s) | 61, 268 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaiI | YATR | 2 cut(s) | 203, 282 |
| FaqI | GGGAC | 1 cut(s) | 151 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 160 |
| FokI | GGATG | 1 cut(s) | 203 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 160 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GluI | GCNGC | 2 cut(s) | 111, 160 |
| GsaI | CCCAGC | 1 cut(s) | 341 |
| HinfI | GANTC | 2 cut(s) | 302, 323 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 127 |
| Hpy188I | TCNGA | 1 cut(s) | 328 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 272 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 127 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 146, 162 |
| Kzo9I | GATC | 2 cut(s) | 61, 268 |
| LpnPI | CCDG | 8 cut(s) | 95, 114, 119, 168, 237, 305, 319, 323 |
| Lsp1109I | GCAGC | 2 cut(s) | 122, 146 |
| LweI | GCATC | 3 cut(s) | 97, 133, 187 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MalI | GATC | 2 cut(s) | 63, 270 |
| MboI | GATC | 2 cut(s) | 61, 268 |
| MboII | GAAGA | 4 cut(s) | 44, 56, 116, 206 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MnlI | CCTC | 2 cut(s) | 84, 181 |
| Mva1269I | GAATGC | 1 cut(s) | 240 |
| NdeII | GATC | 2 cut(s) | 61, 268 |
| PctI | GAATGC | 1 cut(s) | 240 |
| PfeI | GAWTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 2 cut(s) | 112, 161 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| PspFI | CCCAGC | 1 cut(s) | 337 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| SatI | GCNGC | 2 cut(s) | 111, 160 |
| Sau3AI | GATC | 2 cut(s) | 61, 268 |
| SchI | GAGTC | 1 cut(s) | 317 |
| SetI | ASST | 1 cut(s) | 266 |
| SfaNI | GCATC | 3 cut(s) | 97, 133, 187 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| SspMI | CTAG | 1 cut(s) | 5 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| TaqI | TCGA | 2 cut(s) | 30, 67 |
| TatI | WGTACW | 1 cut(s) | 124 |
| TfiI | GAWTC | 1 cut(s) | 302 |
| TseI | GCWGC | 2 cut(s) | 110, 159 |
| TspDTI | ATGAA | 3 cut(s) | 164, 207, 279 |
| XspI | CTAG | 1 cut(s) | 5 |