Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

4413375 .. 4414564

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGAAGGAGTCCGTGTTGCTCCAAGGAAGGACTCAACAGAGGAGCCTGGACTGCCTTGGAAGATAAAATTTTATCATCTTACATCAAAACTCATGGAGAAGGAAAATGGAGAAGCCTCCCTAAAAGAGCTGGTGAGAAAAGCTGCTTTTTGCCTTCTTTTCTCCATCGCTTTTTACCCGTCTATTGTCTGAAGAGATGTGGTAAAAGTTGCAGACTTAGATGGTTAAACTATCTGAGACCAGACATAAAGAGAGGCAACATTTCAGGTGATGAAGAAGAACTCATTGTCAGGCTCCATAACCTTCTCGGGAACAGTCTCCAAACTGCCCCTACGCTTGTTTTTAGTTTTGAGATGGATGCTCTAATTCTGTTGATATTTTACTACAGATGGTCCTTAATTGCCGGAAGGTTACCGGGGCGAACAGACAATGAAATCAAGAATTACTGGAATACAACTTTGGGGAAGAAATCGAAAGTCGATTCGTTTTCTAGATCCTCGAAAGAAACTTCTCTAAATCCAAGCAAATCCGTAGCGAAAAAGAAAGATGTCGAGTCCAAAACATCAACTGCAGCTGCTCAACCTATAGTAATAAGAACCAAGGCCACTAGGTTGACCAAAATTTTAGTCCCACAAAATATTCCTAGTGACGAAAATTCTACAGCAGCTGCCGCAAACCCACTAGAGCTTCAAGCTCATCAGACCCAATCGGCGGAAAAAGGCGGAAGCACCGAAGAGTCTCCGAGGACTAATGCAGGTGACTGCAGCAACATCTTGAAGAACTTTGGCTGCGATGATGACGACATTGATGCGAAGGAAGATCAATACTGCAACGAGTTTCAGTTGCTCGACTCTATACCGTTGGATGAGGCAATGATAAATGACGGCTGCTGGACTGGAGGAAACGGTTGCGATCTGGAGGACTACGGTGCCTCGTTGGATTTAGATTCTTTGGCATTCTTGCTTGACTCTGAGGACTGGCCATCCCAAGAAAATGTTATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.28

Weight (kDa)

5.75

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 79	8.1e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 94	3.2e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	85 - 154	1.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	929
AciI	CCGC	3 cut(s)	672, 713, 723
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	980
AcsI	RAATTY	3 cut(s)	69, 621, 655
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	712
AgsI	TTSAA	2 cut(s)	692, 778
AjnI	CCWGG	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	6 cut(s)	131, 144, 575, 668, 688, 695
AluI	AGCT	6 cut(s)	131, 144, 575, 668, 688, 695
Alw26I	GTCTC	3 cut(s)	232, 323, 744
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	603, 980
ApeKI	GCWGC	8 cut(s)	144, 572, 575, 665, 668, 765, 789, 888
ApoI	RAATTY	3 cut(s)	69, 621, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	146, 281, 770
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	982
BanI	GGYRCC	1 cut(s)	929
BbvI	GCAGC	8 cut(s)	131, 562, 584, 655, 677, 776, 777, 875
BccI	CCATC	5 cut(s)	174, 216, 349, 384, 991
BceAI	ACGGC	1 cut(s)	901
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	232, 323, 744
BfaI	CTAG	4 cut(s)	492, 609, 645, 683
BfmI	CTRYAG	5 cut(s)	385, 570, 585, 660, 763
BfuAI	ACCTGC	1 cut(s)	746
BisI	GCNGC	9 cut(s)	145, 573, 576, 666, 669, 672, 766, 790, 889
BlsI	GCNGC	9 cut(s)	146, 574, 577, 667, 670, 673, 767, 791, 890
Bme1390I	CCNGG	2 cut(s)	49, 417
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	46, 296, 931
BmrFI	CCNGG	2 cut(s)	49, 417
BmsI	GCATC	2 cut(s)	349, 799
BpmI	CTGGAG	2 cut(s)	918, 938
BpuMI	CCSGG	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	5 cut(s)	24, 57, 416, 600, 743
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	3 cut(s)	452, 901, 983
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	5 cut(s)	24, 57, 416, 600, 743
BseGI	GGATG	3 cut(s)	364, 871, 983
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	227, 963
BseNI	ACTGG	3 cut(s)	452, 901, 983
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	8 cut(s)	131, 562, 584, 655, 677, 776, 777, 875
BshFI	GGCC	2 cut(s)	605, 982
BshNI	GGYRCC	1 cut(s)	929
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	405, 416
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	3 cut(s)	232, 323, 744
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	2 cut(s)	605, 982
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	494, 820, 913
BspACI	CCGC	3 cut(s)	672, 713, 723
BspANI	GGCC	2 cut(s)	605, 982
BspCNI	CTCAG	2 cut(s)	228, 964
BspLI	GGNNCC	3 cut(s)	46, 296, 931
BspMAI	CTGCAG	2 cut(s)	574, 767
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	489
BspT107I	GGYRCC	1 cut(s)	929
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	3 cut(s)	452, 901, 983
BssECI	CCNNGG	5 cut(s)	24, 57, 416, 600, 743
BssMI	GATC	3 cut(s)	494, 820, 913
BssT1I	CCWWGG	3 cut(s)	24, 57, 600
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	4 cut(s)	317, 861, 908, 929
Bst6I	CTCTTC	2 cut(s)	188, 729
BstDEI	CTNAG	3 cut(s)	218, 236, 972
BstEII	GGTNACC	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	364, 871, 983
BstKTI	GATC	3 cut(s)	497, 823, 916
BstMAI	GTCTC	3 cut(s)	232, 323, 744
BstMBI	GATC	3 cut(s)	494, 820, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 671
BstNI	CCWGG	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	47, 415
BstSFI	CTRYAG	5 cut(s)	385, 570, 585, 660, 763
BstV1I	GCAGC	8 cut(s)	131, 562, 584, 655, 677, 776, 777, 875
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	605, 982
BtgZI	GCGATG	2 cut(s)	152, 807
BtsCI	GGATG	3 cut(s)	364, 871, 983
BveI	ACCTGC	1 cut(s)	746
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	393
CviAII	CATG	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	218, 236, 972
DpnI	GATC	3 cut(s)	496, 822, 915
DpnII	GATC	3 cut(s)	494, 820, 913
EaeI	YGGCCR	1 cut(s)	980
Eam1104I	CTCTTC	2 cut(s)	188, 729
EarI	CTCTTC	2 cut(s)	188, 729
EciI	GGCGGA	2 cut(s)	728, 738
Eco130I	CCWWGG	3 cut(s)	24, 57, 600
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	3 cut(s)	24, 57, 600
ErhI	CCWWGG	3 cut(s)	24, 57, 600
FaeI	CATG	1 cut(s)	98
FaiI	YATR	6 cut(s)	96, 248, 300, 587, 857, 1001
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	9 cut(s)	145, 573, 576, 666, 669, 672, 766, 790, 889
FokI	GGATG	3 cut(s)	371, 878, 970
Fsp4HI	GCNGC	9 cut(s)	145, 573, 576, 666, 669, 672, 766, 790, 889
FspBI	CTAG	4 cut(s)	492, 609, 645, 683
GluI	GCNGC	9 cut(s)	145, 573, 576, 666, 669, 672, 766, 790, 889
GsuI	CTGGAG	2 cut(s)	918, 938
HaeIII	GGCC	2 cut(s)	605, 982
HapII	CCGG	2 cut(s)	405, 416
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	8 cut(s)	10, 33, 482, 554, 737, 851, 947, 968
HpaII	CCGG	2 cut(s)	405, 416
HphI	GGTGA	3 cut(s)	146, 281, 770
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	5 cut(s)	192, 237, 702, 744, 973
Hpy188III	TCNNGA	5 cut(s)	310, 439, 492, 775, 917
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	6 cut(s)	23, 95, 165, 314, 402, 808
HpyCH4III	ACNGT	4 cut(s)	317, 861, 908, 929
HpyCH4V	TGCA	5 cut(s)	213, 572, 755, 765, 831
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 671
HpyF3I	CTNAG	3 cut(s)	218, 236, 972
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	494, 820, 913
LmnI	GCTCC	3 cut(s)	26, 44, 300
Lsp1109I	GCAGC	8 cut(s)	131, 562, 584, 655, 677, 776, 777, 875
LweI	GCATC	2 cut(s)	349, 799
MaeI	CTAG	4 cut(s)	492, 609, 645, 683
MaeIII	GTNAC	3 cut(s)	411, 647, 758
MalI	GATC	3 cut(s)	496, 822, 915
MboI	GATC	3 cut(s)	494, 820, 913
MboII	GAAGA	8 cut(s)	74, 205, 287, 290, 478, 746, 790, 830
MflI	RGATCY	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	982
MluCI	AATT	6 cut(s)	69, 366, 399, 442, 621, 655
MluNI	TGGCCA	1 cut(s)	982
MlyI	GAGTC	6 cut(s)	19, 27, 563, 746, 845, 962
MmeI	TCCRAC	2 cut(s)	843, 918
Mox20I	TGGCCA	1 cut(s)	982
MscI	TGGCCA	1 cut(s)	982
MseI	TTAA	2 cut(s)	227, 398
Msp20I	TGGCCA	1 cut(s)	982
MspA1I	CMGCKG	2 cut(s)	575, 668
MspI	CCGG	2 cut(s)	405, 416
MspR9I	CCNGG	2 cut(s)	49, 417
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	53, 671
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	494, 820, 913
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	46, 296, 931
NmuCI	GTSAC	2 cut(s)	647, 758
PaqCI	CACCTGC	1 cut(s)	746
PctI	GAATGC	1 cut(s)	956
PfeI	GAWTC	2 cut(s)	482, 947
PkrI	GCNGC	9 cut(s)	146, 574, 577, 667, 670, 673, 767, 791, 890
PleI	GAGTC	6 cut(s)	18, 27, 562, 745, 845, 962
PpsI	GAGTC	6 cut(s)	18, 27, 562, 745, 845, 962
Psp6I	CCWGG	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	46, 296, 931
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	2 cut(s)	574, 767
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	2 cut(s)	575, 668
SaqAI	TTAA	2 cut(s)	227, 398
SatI	GCNGC	9 cut(s)	145, 573, 576, 666, 669, 672, 766, 790, 889
Sau3AI	GATC	3 cut(s)	494, 820, 913
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	6 cut(s)	19, 27, 563, 746, 845, 962
ScrFI	CCNGG	2 cut(s)	49, 417
SfaNI	GCATC	2 cut(s)	349, 799
SfcI	CTRYAG	5 cut(s)	385, 570, 585, 660, 763
SinI	GGWCC	1 cut(s)	393
Sse9I	AATT	6 cut(s)	69, 366, 399, 442, 621, 655
SsiI	CCGC	3 cut(s)	672, 713, 723
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	4 cut(s)	492, 609, 645, 683
StyD4I	CCNGG	2 cut(s)	47, 415
StyI	CCWWGG	3 cut(s)	24, 57, 600
TaaI	ACNGT	4 cut(s)	317, 861, 908, 929
TaqI	TCGA	5 cut(s)	473, 480, 500, 552, 849
TasI	AATT	6 cut(s)	69, 366, 399, 442, 621, 655
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	482, 947
Tru1I	TTAA	2 cut(s)	227, 398
Tru9I	TTAA	2 cut(s)	227, 398
TseFI	GTSAC	2 cut(s)	647, 758
TseI	GCWGC	8 cut(s)	144, 572, 575, 665, 668, 765, 789, 888
Tsp45I	GTSAC	2 cut(s)	647, 758
TspDTI	ATGAA	2 cut(s)	288, 447
TspGWI	ACGGA	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	3 cut(s)	69, 621, 655
XbaI	TCTAGA	1 cut(s)	491
XspI	CTAG	4 cut(s)	492, 609, 645, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.