Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

71066574 .. 71068336

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG516800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGAAGGCAAATGGAGAAACCTCCCAAAGAGAGCTGGTATGTACCCAGTCTGTTCTTCTCTCTGTTTCGATCCGCTCTCTTTTCACTTCTGCTTTTGCTCTTCTCTTACTCTGTTTTCACTCTATTTTTAATGCAGGTTTGAAGAGATGTGGTAAGAGCTGTAGACTGAGATGGTTAAACTATCTGAGGCCAGACATAAAGAGAGGTAATATATCCGGGGATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAAAATTACTGGAACACCACTCTGGTGAAGAAAGCTAAACCCGAATCGAATTCCGGATCATCCAAGGAAACATCTCCCGCTCCGACCAAATTCAGGCCCAGAACGCCATCAGCTTCAGCATCAGCCACAGCCACTCAACCTCAAGTAATAAGAACCAAGGCCACTAGGTTAACCAGAATGCTAGTCCCATCACTCCCACTTCTTATCGATGATTACTCAACAACCACAAGCCCATTAGATCTTCGAGTTCCTCAAACCCAGTCGGTAAGTTCACTTCCTGAAGATGCAGCAAATACAGAAGTACACATTCAGGGGACTGATGCAATGAACTTTGGCTGCAATGGATTTCAAGCAACTGCTGGTGAGGATGAAGATGCTATGGGAGACTACGATATTCCATTAGATGATGGAATGCTCAATGATTGGACAGGAAATGATAGCTGTGATCTTGAGAAATATGGTGCTTCATTGGATTTAGATTCCTTGGCATTTTTGCTGGACTCTGATGACTGGCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

279

Amino Acids

30.69

Weight (kDa)

5.1

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	69 - 114	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 119	6.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AccBSI	CCGCTC	2 cut(s)	78, 398
AccI	GTMKAC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	2 cut(s)	76, 396
AclWI	GGATC	2 cut(s)	67, 382
AcsI	RAATTY	2 cut(s)	367, 407
AcuI	CTGAAG	2 cut(s)	417, 618
AfaI	GTAC	2 cut(s)	46, 621
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	145, 668
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	6 cut(s)	37, 162, 284, 353, 431, 759
AluI	AGCT	6 cut(s)	37, 162, 284, 353, 431, 759
Alw26I	GTCTC	2 cut(s)	279, 696
AlwI	GGATC	2 cut(s)	67, 382
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	3 cut(s)	191, 413, 477
ApeKI	GCWGC	2 cut(s)	605, 654
ApoI	RAATTY	2 cut(s)	367, 407
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	2 cut(s)	220, 297
AsuHPI	GGTGA	2 cut(s)	355, 692
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BbvI	GCAGC	2 cut(s)	617, 641
BccI	CCATC	5 cut(s)	168, 264, 433, 514, 719
BcnI	CCSGG	2 cut(s)	220, 297
BcoDI	GTCTC	2 cut(s)	279, 696
BfaI	CTAG	2 cut(s)	483, 500
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	2 cut(s)	606, 655
BlsI	GCNGC	2 cut(s)	607, 656
Bme1390I	CCNGG	2 cut(s)	220, 297
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	220, 297
BmrI	ACTGGG	2 cut(s)	43, 571
BmsI	GCATC	4 cut(s)	446, 592, 628, 682
BmuI	ACTGGG	2 cut(s)	43, 571
BpuEI	CTTGAG	2 cut(s)	444, 788
BpuMI	CCSGG	2 cut(s)	220, 297
Bsa29I	ATCGAT	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	5 cut(s)	219, 296, 381, 474, 801
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	4 cut(s)	49, 332, 577, 833
Bse3DI	GCAATG	2 cut(s)	648, 664
BseAI	TCCGGA	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	5 cut(s)	219, 296, 381, 474, 801
BseGI	GGATG	3 cut(s)	229, 377, 691
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	2 cut(s)	648, 664
BseMII	CTCAG	2 cut(s)	161, 179
BseNI	ACTGG	4 cut(s)	49, 332, 577, 833
BseXI	GCAGC	2 cut(s)	617, 641
BseYI	CCCAGC	1 cut(s)	832
BshFI	GGCC	3 cut(s)	193, 415, 479
BshVI	ATCGAT	1 cut(s)	525
BsiSI	CCGG	3 cut(s)	219, 296, 372
BslFI	GGGAC	2 cut(s)	488, 646
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	279, 696
BsmFI	GGGAC	2 cut(s)	488, 646
BsmI	GAATGC	2 cut(s)	501, 735
BsnI	GGCC	3 cut(s)	193, 415, 479
Bso31I	GGTCTC	1 cut(s)	279
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	72, 374, 556, 763
BspACI	CCGC	2 cut(s)	76, 396
BspANI	GGCC	3 cut(s)	193, 415, 479
BspCNI	CTCAG	2 cut(s)	162, 180
BspDI	ATCGAT	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	371
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	67, 382
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	279
BsrBI	CCGCTC	2 cut(s)	78, 398
BsrDI	GCAATG	2 cut(s)	648, 664
BsrI	ACTGG	4 cut(s)	49, 332, 577, 833
BssECI	CCNNGG	5 cut(s)	219, 296, 381, 474, 801
BssMI	GATC	4 cut(s)	72, 374, 556, 763
BssT1I	CCWWGG	3 cut(s)	381, 474, 801
Bst6I	CTCTTC	2 cut(s)	108, 140
BstDEI	CTNAG	2 cut(s)	170, 188
BstF5I	GGATG	3 cut(s)	229, 377, 691
BstKTI	GATC	4 cut(s)	75, 377, 559, 766
BstMAI	GTCTC	2 cut(s)	279, 696
BstMBI	GATC	4 cut(s)	72, 374, 556, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 421
BstSCI	CCNGG	2 cut(s)	218, 295
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	617, 641
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	193, 415, 479
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	229, 377, 691
BveI	ACCTGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	45, 620
CviQI	GTAC	2 cut(s)	45, 620
DdeI	CTNAG	2 cut(s)	170, 188
DpnI	GATC	4 cut(s)	74, 376, 558, 765
DpnII	GATC	4 cut(s)	72, 374, 556, 763
Eam1104I	CTCTTC	2 cut(s)	108, 140
EarI	CTCTTC	2 cut(s)	108, 140
Eco130I	CCWWGG	3 cut(s)	381, 474, 801
Eco31I	GGTCTC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	417, 618
EcoRI	GAATTC	1 cut(s)	367
EcoT14I	CCWWGG	3 cut(s)	381, 474, 801
ErhI	CCWWGG	3 cut(s)	381, 474, 801
FaiI	YATR	6 cut(s)	43, 200, 215, 252, 698, 777
FaqI	GGGAC	2 cut(s)	488, 646
FauI	CCCGC	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	606, 655
FokI	GGATG	3 cut(s)	236, 364, 698
Fsp4HI	GCNGC	2 cut(s)	606, 655
FspBI	CTAG	2 cut(s)	483, 500
GluI	GCNGC	2 cut(s)	606, 655
GsaI	CCCAGC	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	193, 415, 479
HapII	CCGG	3 cut(s)	219, 296, 372
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	4 cut(s)	246, 362, 797, 818
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	3 cut(s)	219, 296, 372
HphI	GGTGA	2 cut(s)	355, 692
Hpy166II	GTNNAC	4 cut(s)	167, 489, 590, 622
Hpy188I	TCNGA	4 cut(s)	189, 245, 402, 823
Hpy188III	TCNNGA	3 cut(s)	372, 596, 767
Hpy8I	GTNNAC	4 cut(s)	167, 489, 590, 622
HpyAV	CCTTC	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	137, 605, 641, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 421
HpyF3I	CTNAG	2 cut(s)	170, 188
Kpn2I	TCCGGA	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	72, 374, 556, 763
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	617, 641
LweI	GCATC	4 cut(s)	446, 592, 628, 682
MaeI	CTAG	2 cut(s)	483, 500
MalI	GATC	4 cut(s)	74, 376, 558, 765
MbiI	CCGCTC	2 cut(s)	78, 398
MboI	GATC	4 cut(s)	72, 374, 556, 763
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	3 cut(s)	322, 367, 407
MlyI	GAGTC	2 cut(s)	240, 812
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	34, 183, 200, 468, 579, 676
MroI	TCCGGA	1 cut(s)	371
MseI	TTAA	3 cut(s)	132, 179, 488
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	3 cut(s)	219, 296, 372
MspR9I	CCNGG	2 cut(s)	220, 297
Mva1269I	GAATGC	2 cut(s)	501, 735
MwoI	GCNNNNNNNGC	2 cut(s)	298, 421
NciI	CCSGG	2 cut(s)	220, 297
NdeII	GATC	4 cut(s)	72, 374, 556, 763
OliI	CACNNNNGTG	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	2 cut(s)	501, 735
PfeI	GAWTC	2 cut(s)	362, 797
PkrI	GCNGC	2 cut(s)	607, 656
PleI	GAGTC	2 cut(s)	240, 812
PpsI	GAGTC	2 cut(s)	240, 812
PspFI	CCCAGC	1 cut(s)	832
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	2 cut(s)	46, 621
RsaNI	GTAC	2 cut(s)	45, 620
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	132, 179, 488
SatI	GCNGC	2 cut(s)	606, 655
Sau3AI	GATC	4 cut(s)	72, 374, 556, 763
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	2 cut(s)	240, 812
ScrFI	CCNGG	2 cut(s)	220, 297
SfaNI	GCATC	4 cut(s)	446, 592, 628, 682
SfcI	CTRYAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	459, 767
SmoI	CTYRAG	2 cut(s)	459, 767
Sse9I	AATT	3 cut(s)	322, 367, 407
SsiI	CCGC	2 cut(s)	76, 396
SspMI	CTAG	2 cut(s)	483, 500
StyD4I	CCNGG	2 cut(s)	218, 295
StyI	CCWWGG	3 cut(s)	381, 474, 801
TaqI	TCGA	4 cut(s)	71, 365, 525, 562
TasI	AATT	3 cut(s)	322, 367, 407
TatI	WGTACW	1 cut(s)	619
TfiI	GAWTC	2 cut(s)	362, 797
Tru1I	TTAA	3 cut(s)	132, 179, 488
Tru9I	TTAA	3 cut(s)	132, 179, 488
TseI	GCWGC	2 cut(s)	605, 654
TspDTI	ATGAA	5 cut(s)	240, 327, 659, 702, 774
XapI	RAATTY	2 cut(s)	367, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	483, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.