Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

68539996 .. 68541363

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGGAGGAGTCCATGCTGCTCCAAGGAAGGACTTAACAGAGGAGCTTGGACTGCCTTGGAAGATAAAGTACTAACGTCTTACATCAAAGCCCATGGAGAAGGCAAATGGAGAAACCTCCCAAAGAGAGCTGGTTTGAAGAGATGTGGTAAGAGCTGTAGACTGAGATGGTTAAACTATCTGAGGCCAGACATAAAGAGAGGTAATATATCCGGGGATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAAAATTACTGGAACACCACTCTGGTGAAGAAAGCTAAACCCGAATCGCATTCGGGATCATCCAAGGAAACATCTCCCGCTCCGACCAAATTCAGGCCCAGAACGCCATCAGCCACAGCCACTCAACCTCAAGTAATAAGAACCAAGGCCACTAGGTTAACCAGAATGCTAGTCCCATCACTCCCACTTCTAATCGATGATTACTCAACAACCACAAGCCCATTAGATCTTCGAGTTCCTCAAACCCAGTCGGTAAGTTCACTTCCTGAAGACGCAGCAAATACAGAAGTACACATTCAGGGGACAGATGCAATGAACTTTGGCTGCAATGGATTTCAAGCAGCTGCTGGTGAGGATGAAGATGCTATGGGAGGCTACGATATTCCATTAGATGATGGAATGCTCAATGATTGGACAGGAAATGATAACTGTGATCTTGAGAAATATGGTGCTTCATTGGATTTAGATTCCTTGGCATTTTTGCTGGACTCTGATGACTGGCTGGGCCAAGAAAATAGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

278

Amino Acids

30.75

Weight (kDa)

6.14

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	1.9e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 117	5.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	2 cut(s)	72, 603
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	139, 650
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	6 cut(s)	47, 131, 156, 278, 347, 656
AluI	AGCT	6 cut(s)	47, 131, 156, 278, 347, 656
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	4 cut(s)	185, 407, 459, 817
ApeKI	GCWGC	5 cut(s)	18, 587, 636, 653, 656
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	408, 817
AsuC2I	CCSGG	2 cut(s)	214, 291
AsuHPI	GGTGA	2 cut(s)	349, 674
BarI	GAAGNNNNNNTAC	4 cut(s)	54, 86, 558, 590
BbsI	GAAGAC	1 cut(s)	588
BbvI	GCAGC	5 cut(s)	5, 599, 623, 643, 665
BccI	CCATC	5 cut(s)	162, 258, 427, 496, 701
BcnI	CCSGG	2 cut(s)	214, 291
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	465, 482
BfmI	CTRYAG	1 cut(s)	157
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	5 cut(s)	19, 588, 637, 654, 657
BlsI	GCNGC	5 cut(s)	20, 589, 638, 655, 658
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	2 cut(s)	214, 291
BmgT120I	GGNCC	2 cut(s)	408, 817
BmrFI	CCNGG	2 cut(s)	214, 291
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	610, 664
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	588
BpuEI	CTTGAG	2 cut(s)	426, 770
BpuMI	CCSGG	2 cut(s)	214, 291
Bsa29I	ATCGAT	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 456, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	326, 559, 815
Bse3DI	GCAATG	2 cut(s)	630, 646
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 456, 783
BseGI	GGATG	3 cut(s)	223, 371, 673
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	2 cut(s)	630, 646
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	3 cut(s)	326, 559, 815
BseRI	GAGGAG	2 cut(s)	22, 57
BseXI	GCAGC	5 cut(s)	5, 599, 623, 643, 665
BseYI	CCCAGC	1 cut(s)	814
BshFI	GGCC	4 cut(s)	187, 409, 461, 819
BshVI	ATCGAT	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	213, 290
BslFI	GGGAC	2 cut(s)	470, 628
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	470, 628
BsmI	GAATGC	3 cut(s)	361, 483, 717
BsnI	GGCC	4 cut(s)	187, 409, 461, 819
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	368, 538, 745
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	4 cut(s)	187, 409, 461, 819
BspCNI	CTCAG	2 cut(s)	156, 174
BspDI	ATCGAT	1 cut(s)	507
BspPI	GGATC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	630, 646
BsrI	ACTGG	3 cut(s)	326, 559, 815
BssECI	CCNNGG	8 cut(s)	24, 57, 94, 213, 290, 375, 456, 783
BssMI	GATC	3 cut(s)	368, 538, 745
BssT1I	CCWWGG	6 cut(s)	24, 57, 94, 375, 456, 783
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	223, 371, 673
BstKTI	GATC	3 cut(s)	371, 541, 748
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	368, 538, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
BstSCI	CCNGG	2 cut(s)	212, 289
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	5, 599, 623, 643, 665
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	187, 409, 461, 819
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	223, 371, 673
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	408, 817
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	71, 602
CviAII	CATG	2 cut(s)	15, 95
CviQI	GTAC	2 cut(s)	71, 602
DdeI	CTNAG	2 cut(s)	164, 182
DpnI	GATC	3 cut(s)	370, 540, 747
DpnII	GATC	3 cut(s)	368, 538, 745
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	6 cut(s)	24, 57, 94, 375, 456, 783
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	600
EcoT14I	CCWWGG	6 cut(s)	24, 57, 94, 375, 456, 783
ErhI	CCWWGG	6 cut(s)	24, 57, 94, 375, 456, 783
FaeI	CATG	2 cut(s)	18, 98
FaiI	YATR	7 cut(s)	16, 96, 194, 209, 246, 680, 759
FaqI	GGGAC	2 cut(s)	470, 628
FatI	CATG	2 cut(s)	14, 94
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	19, 588, 637, 654, 657
FokI	GGATG	3 cut(s)	230, 358, 680
Fsp4HI	GCNGC	5 cut(s)	19, 588, 637, 654, 657
FspBI	CTAG	2 cut(s)	465, 482
GluI	GCNGC	5 cut(s)	19, 588, 637, 654, 657
GsaI	CCCAGC	1 cut(s)	818
HaeIII	GGCC	4 cut(s)	187, 409, 461, 819
HapII	CCGG	2 cut(s)	213, 290
HgaI	GACGC	1 cut(s)	593
Hin1II	CATG	2 cut(s)	18, 98
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	5 cut(s)	10, 240, 356, 779, 800
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	2 cut(s)	213, 290
HphI	GGTGA	2 cut(s)	349, 674
Hpy166II	GTNNAC	4 cut(s)	161, 471, 572, 604
Hpy188I	TCNGA	4 cut(s)	183, 239, 396, 805
Hpy188III	TCNNGA	3 cut(s)	366, 578, 749
Hpy8I	GTNNAC	4 cut(s)	161, 471, 572, 604
HpyAV	CCTTC	3 cut(s)	23, 95, 276
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	623, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
HpyF3I	CTNAG	2 cut(s)	164, 182
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	18, 98
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	368, 538, 745
LmnI	GCTCC	3 cut(s)	26, 44, 397
Lsp1109I	GCAGC	5 cut(s)	5, 599, 623, 643, 665
LweI	GCATC	2 cut(s)	610, 664
MaeI	CTAG	2 cut(s)	465, 482
MaeII	ACGT	1 cut(s)	77
MalI	GATC	3 cut(s)	370, 540, 747
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	3 cut(s)	368, 538, 745
MboII	GAAGA	9 cut(s)	74, 151, 233, 236, 242, 352, 533, 593, 683
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	2 cut(s)	316, 401
MlyI	GAGTC	3 cut(s)	19, 234, 794
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	35, 128, 177, 194, 450, 561, 658, 677
MseI	TTAA	3 cut(s)	36, 173, 470
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	2 cut(s)	213, 290
MspR9I	CCNGG	2 cut(s)	214, 291
Mva1269I	GAATGC	3 cut(s)	361, 483, 717
MwoI	GCNNNNNNNGC	3 cut(s)	53, 292, 415
NciI	CCSGG	2 cut(s)	214, 291
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	368, 538, 745
NlaIII	CATG	2 cut(s)	18, 98
OliI	CACNNNNGTG	1 cut(s)	335
PctI	GAATGC	3 cut(s)	361, 483, 717
PfeI	GAWTC	2 cut(s)	356, 779
PkrI	GCNGC	5 cut(s)	20, 589, 638, 655, 658
PleI	GAGTC	3 cut(s)	18, 234, 794
PpsI	GAGTC	3 cut(s)	18, 234, 794
PspFI	CCCAGC	1 cut(s)	814
PspPI	GGNCC	2 cut(s)	408, 817
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	2 cut(s)	72, 603
RsaNI	GTAC	2 cut(s)	71, 602
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	36, 173, 470
SatI	GCNGC	5 cut(s)	19, 588, 637, 654, 657
Sau3AI	GATC	3 cut(s)	368, 538, 745
Sau96I	GGNCC	2 cut(s)	408, 817
ScaI	AGTACT	1 cut(s)	72
SchI	GAGTC	3 cut(s)	19, 234, 794
ScrFI	CCNGG	2 cut(s)	214, 291
SfaNI	GCATC	2 cut(s)	610, 664
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	441, 749
SmoI	CTYRAG	2 cut(s)	441, 749
Sse9I	AATT	2 cut(s)	316, 401
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	465, 482
StyD4I	CCNGG	2 cut(s)	212, 289
StyI	CCWWGG	6 cut(s)	24, 57, 94, 375, 456, 783
TaaI	ACNGT	1 cut(s)	743
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	507, 544
TasI	AATT	2 cut(s)	316, 401
TatI	WGTACW	2 cut(s)	70, 601
TfiI	GAWTC	2 cut(s)	356, 779
Tru1I	TTAA	3 cut(s)	36, 173, 470
Tru9I	TTAA	3 cut(s)	36, 173, 470
TseI	GCWGC	5 cut(s)	18, 587, 636, 653, 656
TspDTI	ATGAA	5 cut(s)	234, 321, 641, 684, 756
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	465, 482
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.