Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Forward (+)

3536821 .. 3537781

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGGAGGAGTCCATGTTGCTCCAAGGAAGGACTCAACAGAGGAGCCTGGACTGCCTTGGAAGATAAAATTCTAACAGCTTACATTAAAGCCCATGGAGAAGGCAAATGGAGAAGCCTTCCCAAAAGAGCTGGTCTAAAGAGATGTGGTAAAAGTTGCAGACTGAGATGGTTAAACTATCTGAGACCAGACATAAAGAGAGGCAACATTTCAGGTGATGAAGAGGAACTCATTGTTAGACTCCATAACCTTCTTGGTAACAGATGGTCGTTGATAGCCGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAGAATTACTGGAACACAACTTTGTGGAAGAAATCGAAAGCCGATTCTCCTTCTGGATCCTCGAAAGAAACTTCTCAACATCCAAGCAAATCCGTAGTGAAAAAGAAAGATGTCGAGTCCAAAACAACATCAACTGCAGCTGCTAAACCTCTAGTAATAAGAACCAAGGCCACTAGGTTGTCCAAAATTCTAGTCCCACAAAACATTCCTAGTCAAGGACGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

180

Amino Acids

20.02

Weight (kDa)

10.37

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.8e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.2e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	363, 376
AcsI	RAATTY	2 cut(s)	69, 498
AfiI	CCNNNNNNNGG	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	80, 131, 452, 537
AluI	AGCT	4 cut(s)	80, 131, 452, 537
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	363, 376
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	2 cut(s)	449, 452
ApoI	RAATTY	2 cut(s)	69, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	439, 461
BccI	CCATC	2 cut(s)	162, 258
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	5 cut(s)	464, 486, 503, 522, 538
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	450, 453
BlsI	GCNGC	2 cut(s)	451, 454
Bme1390I	CCNGG	2 cut(s)	49, 291
BmiI	GGNNCC	2 cut(s)	46, 370
BmrFI	CCNGG	2 cut(s)	49, 291
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	5 cut(s)	24, 57, 94, 290, 477
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	5 cut(s)	24, 57, 94, 290, 477
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	22, 57
BseXI	GCAGC	2 cut(s)	439, 461
BshFI	GGCC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	279, 290
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	368
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	156, 174
BspLI	GGNNCC	2 cut(s)	46, 370
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	363, 376
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	5 cut(s)	24, 57, 94, 290, 477
BssMI	GATC	1 cut(s)	368
BssT1I	CCWWGG	4 cut(s)	24, 57, 94, 477
Bst2UI	CCWGG	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 292
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 289
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	439, 461
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	391
CviAII	CATG	2 cut(s)	15, 95
DdeI	CTNAG	2 cut(s)	164, 182
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	4 cut(s)	24, 57, 94, 477
Eco31I	GGTCTC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	4 cut(s)	24, 57, 94, 477
ErhI	CCWWGG	4 cut(s)	24, 57, 94, 477
FaeI	CATG	2 cut(s)	18, 98
FaiI	YATR	4 cut(s)	16, 96, 194, 246
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	14, 94
Fnu4HI	GCNGC	2 cut(s)	450, 453
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	450, 453
FspBI	CTAG	5 cut(s)	464, 486, 503, 522, 538
GluI	GCNGC	2 cut(s)	450, 453
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	2 cut(s)	279, 290
Hin1II	CATG	2 cut(s)	18, 98
HinfI	GANTC	5 cut(s)	10, 33, 240, 356, 428
HpaII	CCGG	2 cut(s)	279, 290
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	313, 366
HpyAV	CCTTC	6 cut(s)	23, 95, 128, 260, 276, 372
HpyCH4V	TGCA	2 cut(s)	159, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 292
HpyF3I	CTNAG	2 cut(s)	164, 182
Hsp92II	CATG	2 cut(s)	18, 98
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	3 cut(s)	26, 44, 534
LpnPI	CCDG	9 cut(s)	34, 61, 117, 198, 201, 292, 303, 307, 351
Lsp1109I	GCAGC	2 cut(s)	439, 461
MaeI	CTAG	5 cut(s)	464, 486, 503, 522, 538
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	3 cut(s)	74, 233, 352
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	3 cut(s)	69, 316, 498
MlyI	GAGTC	4 cut(s)	19, 27, 234, 437
MnlI	CCTC	5 cut(s)	35, 194, 217, 382, 471
MseI	TTAA	2 cut(s)	87, 173
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	2 cut(s)	279, 290
MspR9I	CCNGG	2 cut(s)	49, 291
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	53, 292
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	18, 98
NlaIV	GGNNCC	2 cut(s)	46, 370
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	451, 454
PleI	GAGTC	4 cut(s)	18, 27, 234, 436
PpsI	GAGTC	4 cut(s)	18, 27, 234, 436
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	46, 370
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	87, 173
SatI	GCNGC	2 cut(s)	450, 453
Sau3AI	GATC	1 cut(s)	368
SchI	GAGTC	4 cut(s)	19, 27, 234, 437
ScrFI	CCNGG	2 cut(s)	49, 291
SetI	ASST	8 cut(s)	82, 133, 217, 252, 454, 463, 491, 539
SfcI	CTRYAG	1 cut(s)	447
Sse9I	AATT	3 cut(s)	69, 316, 498
SspMI	CTAG	5 cut(s)	464, 486, 503, 522, 538
StyD4I	CCNGG	2 cut(s)	47, 289
StyI	CCWWGG	4 cut(s)	24, 57, 94, 477
TaqI	TCGA	3 cut(s)	347, 374, 426
TasI	AATT	3 cut(s)	69, 316, 498
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	87, 173
Tru9I	TTAA	2 cut(s)	87, 173
TseI	GCWGC	2 cut(s)	449, 452
TspDTI	ATGAA	2 cut(s)	234, 321
TspGWI	ACGGA	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	69, 498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	5 cut(s)	464, 486, 503, 522, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.