Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Forward (+)

35645763 .. 35647480

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGGAGAAGTCCATGTTGCTCCAAGCAGGGATTGAACAGAGGAGCATGGACTGCCCTAGAAGATAAAATACTAACTTCTTACATCAAAGCCCATGGTGAAGGCAAATGGAGAAGCCTCCCAAAGAGAGCTGGTTTGAAGAGATGTGGGAAGAGCTGTAGACTTAGATGGCTTAACTATCTGAGACCAGATATAAAGAGAGGCAACATATCCGGTGATGAAGAAGAACTAATTGTCAGACTCCATAAACTTCTTGGGAACAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACCACTTTGGGGAAGAAAGCTAAAGGAGAGCCAACTTCCACCGGTTCATCAAAAGAAACTTCTCCACCCCCAACCAAATCCAGAGCCAAAAGGCGAGAAATCGAGTCGAAAACAACGAAACCATCAGCAGCCGCAGCCGCAGCTACTCTGCCTCCAGTAATAAGAACCAAGGCCACAAGGTTGACCAAAGTTTTAGTCCCAACAATCCCTCAGATTCCTAGCGATGATTATAATCAGACGGCCAATGCTTCATCTTCCACAAACCCATCAGAGCTCCAAGGTCATCAAACCCAGTTGACAGATCAACAAGTTAATGCAGGGGATTGCACTAACAACTTGAACAACAACTATGGCTGCAACGACGAAGATGATGATATTGAAGCTAAGGGTGGGTTCTGCAATGCGTTTCAGTCTCTGCCACTAGACGAGGCTATGATCAATGCCACGTGGACGGGTGGAAACGATTGTGATCTTGAAGACTACGGTGCCACATTGGATTTAGATTCTTTGGCTTTTTTGCTTGACTCCGAGGAATGGCCATCGCAAGATAATATTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

296

Amino Acids

32.39

Weight (kDa)

8.05

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	2 cut(s)	459, 465
AcoI	YGGCCR	2 cut(s)	567, 863
AcvI	CACGTG	1 cut(s)	774
AfiI	CCNNNNNNNGG	2 cut(s)	336, 861
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	37, 139, 667, 707, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	7 cut(s)	131, 156, 278, 347, 470, 601, 710
AluI	AGCT	7 cut(s)	131, 156, 278, 347, 470, 601, 710
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	178, 273, 744
AlwNI	CAGNNNCTG	1 cut(s)	742
AoxI	GGCC	3 cut(s)	498, 567, 863
ApeKI	GCWGC	4 cut(s)	455, 461, 467, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AsiGI	ACCGGT	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	110, 227
BalI	TGGCCA	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbrPI	CACGTG	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	467, 473, 479, 668
BccI	CCATC	5 cut(s)	162, 258, 457, 601, 874
BceAI	ACGGC	1 cut(s)	582
BclI	TGATCA	1 cut(s)	762
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	3 cut(s)	178, 273, 744
BfaI	CTAG	3 cut(s)	59, 546, 749
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	6 cut(s)	456, 459, 462, 465, 468, 682
BlsI	GCNGC	6 cut(s)	457, 460, 463, 466, 469, 683
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	810
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	774
BsaBI	GATNNNNATC	2 cut(s)	558, 795
BsaI	GGTCTC	2 cut(s)	178, 273
BsaJI	CCNNGG	5 cut(s)	94, 290, 495, 604, 855
BsaWI	WCCGGW	2 cut(s)	212, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 861
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	326, 482, 619
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	2 cut(s)	558, 795
BseDI	CCNNGG	5 cut(s)	94, 290, 495, 604, 855
BseJI	GATNNNNATC	2 cut(s)	558, 795
BseLI	CCNNNNNNNGG	2 cut(s)	336, 861
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	173, 551
BseNI	ACTGG	3 cut(s)	326, 482, 619
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	467, 473, 479, 668
BshFI	GGCC	3 cut(s)	500, 569, 865
BshNI	GGYRCC	1 cut(s)	812
BshTI	ACCGGT	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	3 cut(s)	213, 290, 369
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	336, 861
BsmAI	GTCTC	3 cut(s)	178, 273, 744
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	500, 569, 865
Bso31I	GGTCTC	2 cut(s)	178, 273
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	628, 762, 796
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	459, 465
BspANI	GGCC	3 cut(s)	500, 569, 865
BspCNI	CTCAG	2 cut(s)	174, 550
BspLI	GGNNCC	1 cut(s)	814
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	812
BspTNI	GGTCTC	2 cut(s)	178, 273
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	326, 482, 619
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	5 cut(s)	94, 290, 495, 604, 855
BssMI	GATC	3 cut(s)	628, 762, 796
BssT1I	CCWWGG	3 cut(s)	94, 495, 604
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	2 cut(s)	134, 146
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	774
BstDEI	CTNAG	4 cut(s)	164, 182, 537, 711
BstDSI	CCRYGG	1 cut(s)	94
BstKTI	GATC	3 cut(s)	631, 765, 799
BstMAI	GTCTC	3 cut(s)	178, 273, 744
BstMBI	GATC	3 cut(s)	628, 762, 796
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 292, 461, 464, 467
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	4 cut(s)	467, 473, 479, 668
BstV2I	GAAGAC	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	500, 569, 865
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	2 cut(s)	564, 852
CaiI	CAGNNNCTG	1 cut(s)	742
Cfr10I	RCCGGY	1 cut(s)	368
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	3 cut(s)	15, 48, 95
DdeI	CTNAG	4 cut(s)	164, 182, 537, 711
DpnI	GATC	3 cut(s)	630, 764, 798
DpnII	GATC	3 cut(s)	628, 762, 796
EaeI	YGGCCR	2 cut(s)	567, 863
Eam1104I	CTCTTC	2 cut(s)	134, 146
EarI	CTCTTC	2 cut(s)	134, 146
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	3 cut(s)	94, 495, 604
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	2 cut(s)	178, 273
Eco53kI	GAGCTC	1 cut(s)	601
Eco72I	CACGTG	1 cut(s)	774
EcoICRI	GAGCTC	1 cut(s)	601
EcoT14I	CCWWGG	3 cut(s)	94, 495, 604
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	3 cut(s)	94, 495, 604
FaeI	CATG	3 cut(s)	18, 51, 98
FaiI	YATR	9 cut(s)	16, 49, 96, 194, 209, 246, 558, 678, 761
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	14, 47, 94
FbaI	TGATCA	1 cut(s)	762
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	6 cut(s)	456, 459, 462, 465, 468, 682
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	6 cut(s)	456, 459, 462, 465, 468, 682
FspBI	CTAG	3 cut(s)	59, 546, 749
GluI	GCNGC	6 cut(s)	456, 459, 462, 465, 468, 682
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	500, 569, 865
HapII	CCGG	3 cut(s)	213, 290, 369
Hin1II	CATG	3 cut(s)	18, 51, 98
HincII	GTYRAC	2 cut(s)	510, 624
HindII	GTYRAC	2 cut(s)	510, 624
HinfI	GANTC	5 cut(s)	240, 431, 541, 830, 851
HpaII	CCGG	3 cut(s)	213, 290, 369
HphI	GGTGA	2 cut(s)	110, 227
Hpy166II	GTNNAC	4 cut(s)	161, 510, 624, 777
Hpy188I	TCNGA	6 cut(s)	183, 239, 540, 564, 598, 856
Hpy188III	TCNNGA	3 cut(s)	313, 408, 800
Hpy8I	GTNNAC	4 cut(s)	161, 510, 624, 777
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	2 cut(s)	95, 276
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	4 cut(s)	644, 654, 684, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 292, 461, 464, 467
HpyF3I	CTNAG	4 cut(s)	164, 182, 537, 711
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	3 cut(s)	18, 51, 98
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	3 cut(s)	628, 762, 796
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	26, 44, 606
Lsp1109I	GCAGC	4 cut(s)	467, 473, 479, 668
MaeI	CTAG	3 cut(s)	59, 546, 749
MaeII	ACGT	1 cut(s)	773
MalI	GATC	3 cut(s)	630, 764, 798
MboI	GATC	3 cut(s)	628, 762, 796
MboII	GAAGA	9 cut(s)	74, 151, 163, 233, 236, 352, 573, 704, 815
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	865
MluCI	AATT	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	865
MlyI	GAGTC	3 cut(s)	234, 440, 845
MnlI	CCTC	7 cut(s)	35, 128, 194, 489, 546, 748, 850
Mox20I	TGGCCA	1 cut(s)	865
MscI	TGGCCA	1 cut(s)	865
MseI	TTAA	2 cut(s)	174, 639
Msp20I	TGGCCA	1 cut(s)	865
MspI	CCGG	3 cut(s)	213, 290, 369
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	5 cut(s)	53, 292, 461, 464, 467
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	628, 762, 796
NlaIII	CATG	3 cut(s)	18, 51, 98
NlaIV	GGNNCC	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	541, 830
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	6 cut(s)	457, 460, 463, 466, 469, 683
PleI	GAGTC	3 cut(s)	234, 439, 845
PmaCI	CACGTG	1 cut(s)	774
PmlI	CACGTG	1 cut(s)	774
PpsI	GAGTC	3 cut(s)	234, 439, 845
Ppu21I	YACGTR	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	603
PspCI	CACGTG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	603
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	174, 639
SatI	GCNGC	6 cut(s)	456, 459, 462, 465, 468, 682
Sau3AI	GATC	3 cut(s)	628, 762, 796
SchI	GAGTC	3 cut(s)	234, 440, 845
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	459, 465
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	3 cut(s)	59, 546, 749
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	3 cut(s)	94, 495, 604
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	2 cut(s)	429, 434
TasI	AATT	1 cut(s)	231
TauI	GCSGC	2 cut(s)	461, 467
TfiI	GAWTC	2 cut(s)	541, 830
Tru1I	TTAA	2 cut(s)	174, 639
Tru9I	TTAA	2 cut(s)	174, 639
TseI	GCWGC	4 cut(s)	455, 461, 467, 681
TspDTI	ATGAA	4 cut(s)	234, 321, 363, 567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	59, 546, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.