Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016272

Physical Location & Seq

Genomic Coordinates Reverse (-)

67815784 .. 67817587

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG506000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGAAACCTCCCAAAGAGAGCTGGTTTGTACCCAGTCTGTTCTTCTCTCTGTTTCGATCCGCTCTCTTTTCACTTCTGCTTTTGCTCCTCTTACTCTGTCTTCACTCTATTTTTAATGCAGGTTTGAAGAGATGTGGTAAGAGCTGTAGACTGAGATGGTTAAACTATCTGAGGCCAGACATAAAGAGAGGTAATATATCCGGGGATGAAGAAGAACTCATTATCAGACTCCATAATCTTCTTGGCAACAGATGGTCTCTAATAGCTGGAAGGCTACCGGGGCGAACAGACAATGAAATCAAAAATTACTGGAACACCACTCTGGTGAAGAAAGCTAAACCCGAATCGCATTCGGGATCATCCAAGGAAACATCTCCCGCTCCGACCAAATTCAGGCCCAGAACGCCATCAGCCACAGCCACTCAACCTCAAGTAATAAGAACCAAGGCCACTAGGTTAACCAGAATGCTAGTCCCATCACTCCCACTTCTAATCGATGATTACTCAACAACCACAAGCCCATTAGATCTTCGAGTTCCTCAAACCCAGTCGGTAAGTTCACTTCCTGAAGACGCAGCAAATACAGAAGTACACATTCAGGGGACAGATGCAATGAACTTTGGCTGCAATGGATTTCAAGCAGCTGCTGGTGAGGATGAAGATGCTATGGGAGGCTACGATATTCCATTAGATGATGGAATGCTCAATGATTGGACAGGAAATGATAACTGTGATCTTGAGAAATATGGTGCTTCATTGGATTTAGATTCCTTGGCATTTTTGCTGGACTCTGATGACTGGCTGGGCCAAGAAAATAGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.6

Weight (kDa)

5.32

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	64 - 109	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 114	5.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31100
malus_domestica	MD08G1070700.v1.1 MD15G1051400.v1.1
prunus_persica	Prupe.1G405400_v2.0.a1
pyrus_communis	pycom08g05850
rosa_chinensis	RchiOBHm_Chr6g0311681
rosa_laevigata	RLG00000010382
rosa_multiflora	Rmu_sc0002888.1_g000015
rosa_roxburghii	Rroxscaffold_7G00157390
rosa_rugosa	Rorug06G0390900
rosa_samantha	Rh6AG506000 Rh6BG516800 Rh6CG522700 Rh6DG508500
rosa_wichuraiana	Rw6G044030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccBSI	CCGCTC	2 cut(s)	65, 383
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	2 cut(s)	63, 381
AclWI	GGATC	2 cut(s)	54, 367
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	33, 594
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	130, 641
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	24, 147, 269, 338, 647
AluI	AGCT	5 cut(s)	24, 147, 269, 338, 647
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	54, 367
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	4 cut(s)	176, 398, 450, 808
ApeKI	GCWGC	4 cut(s)	578, 627, 644, 647
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	399, 808
AsuC2I	CCSGG	2 cut(s)	205, 282
AsuHPI	GGTGA	2 cut(s)	340, 665
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbsI	GAAGAC	2 cut(s)	95, 579
BbvI	GCAGC	4 cut(s)	590, 614, 634, 656
BccI	CCATC	5 cut(s)	153, 249, 418, 487, 692
BcnI	CCSGG	2 cut(s)	205, 282
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	456, 473
BfmI	CTRYAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	4 cut(s)	579, 628, 645, 648
BlsI	GCNGC	4 cut(s)	580, 629, 646, 649
Bme1390I	CCNGG	2 cut(s)	205, 282
BmgT120I	GGNCC	2 cut(s)	399, 808
BmrFI	CCNGG	2 cut(s)	205, 282
BmrI	ACTGGG	2 cut(s)	30, 544
BmsI	GCATC	2 cut(s)	601, 655
BmuI	ACTGGG	2 cut(s)	30, 544
BpiI	GAAGAC	2 cut(s)	95, 579
BpuEI	CTTGAG	2 cut(s)	417, 761
BpuMI	CCSGG	2 cut(s)	205, 282
Bsa29I	ATCGAT	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	5 cut(s)	204, 281, 366, 447, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	4 cut(s)	36, 317, 550, 806
Bse3DI	GCAATG	2 cut(s)	621, 637
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	204, 281, 366, 447, 774
BseGI	GGATG	3 cut(s)	214, 362, 664
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	2 cut(s)	621, 637
BseMII	CTCAG	2 cut(s)	146, 164
BseNI	ACTGG	4 cut(s)	36, 317, 550, 806
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	4 cut(s)	590, 614, 634, 656
BseYI	CCCAGC	1 cut(s)	805
BshFI	GGCC	4 cut(s)	178, 400, 452, 810
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	204, 281
BslFI	GGGAC	2 cut(s)	461, 619
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	461, 619
BsmI	GAATGC	3 cut(s)	352, 474, 708
BsnI	GGCC	4 cut(s)	178, 400, 452, 810
Bso31I	GGTCTC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	59, 359, 529, 736
BspACI	CCGC	2 cut(s)	63, 381
BspANI	GGCC	4 cut(s)	178, 400, 452, 810
BspCNI	CTCAG	2 cut(s)	147, 165
BspDI	ATCGAT	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	54, 367
BspTNI	GGTCTC	1 cut(s)	264
BsrBI	CCGCTC	2 cut(s)	65, 383
BsrDI	GCAATG	2 cut(s)	621, 637
BsrI	ACTGG	4 cut(s)	36, 317, 550, 806
BssECI	CCNNGG	5 cut(s)	204, 281, 366, 447, 774
BssMI	GATC	4 cut(s)	59, 359, 529, 736
BssT1I	CCWWGG	3 cut(s)	366, 447, 774
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	155, 173
BstF5I	GGATG	3 cut(s)	214, 362, 664
BstKTI	GATC	4 cut(s)	62, 362, 532, 739
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	4 cut(s)	59, 359, 529, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 406
BstSCI	CCNGG	2 cut(s)	203, 280
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	4 cut(s)	590, 614, 634, 656
BstV2I	GAAGAC	2 cut(s)	95, 579
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	178, 400, 452, 810
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	214, 362, 664
BveI	ACCTGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	399, 808
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	32, 593
CviQI	GTAC	2 cut(s)	32, 593
DdeI	CTNAG	2 cut(s)	155, 173
DpnI	GATC	4 cut(s)	61, 361, 531, 738
DpnII	GATC	4 cut(s)	59, 359, 529, 736
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	366, 447, 774
Eco31I	GGTCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	591
EcoT14I	CCWWGG	3 cut(s)	366, 447, 774
ErhI	CCWWGG	3 cut(s)	366, 447, 774
FaiI	YATR	5 cut(s)	185, 200, 237, 671, 750
FaqI	GGGAC	2 cut(s)	461, 619
FauI	CCCGC	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	579, 628, 645, 648
FokI	GGATG	3 cut(s)	221, 349, 671
Fsp4HI	GCNGC	4 cut(s)	579, 628, 645, 648
FspBI	CTAG	2 cut(s)	456, 473
GluI	GCNGC	4 cut(s)	579, 628, 645, 648
GsaI	CCCAGC	1 cut(s)	809
HaeIII	GGCC	4 cut(s)	178, 400, 452, 810
HapII	CCGG	2 cut(s)	204, 281
HgaI	GACGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	4 cut(s)	231, 347, 770, 791
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	204, 281
HphI	GGTGA	2 cut(s)	340, 665
Hpy166II	GTNNAC	4 cut(s)	152, 462, 563, 595
Hpy188I	TCNGA	4 cut(s)	174, 230, 387, 796
Hpy188III	TCNNGA	3 cut(s)	357, 569, 740
Hpy8I	GTNNAC	4 cut(s)	152, 462, 563, 595
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4V	TGCA	3 cut(s)	122, 614, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 406
HpyF3I	CTNAG	2 cut(s)	155, 173
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	59, 359, 529, 736
LmnI	GCTCC	2 cut(s)	93, 388
Lsp1109I	GCAGC	4 cut(s)	590, 614, 634, 656
LweI	GCATC	2 cut(s)	601, 655
MaeI	CTAG	2 cut(s)	456, 473
MalI	GATC	4 cut(s)	61, 361, 531, 738
MbiI	CCGCTC	2 cut(s)	65, 383
MboI	GATC	4 cut(s)	59, 359, 529, 736
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	2 cut(s)	307, 392
MlyI	GAGTC	2 cut(s)	225, 785
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	21, 101, 168, 185, 441, 552, 649, 668
MseI	TTAA	3 cut(s)	117, 164, 461
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	204, 281
MspR9I	CCNGG	2 cut(s)	205, 282
Mva1269I	GAATGC	3 cut(s)	352, 474, 708
MwoI	GCNNNNNNNGC	2 cut(s)	283, 406
NciI	CCSGG	2 cut(s)	205, 282
NdeII	GATC	4 cut(s)	59, 359, 529, 736
OliI	CACNNNNGTG	1 cut(s)	326
PctI	GAATGC	3 cut(s)	352, 474, 708
PfeI	GAWTC	2 cut(s)	347, 770
PkrI	GCNGC	4 cut(s)	580, 629, 646, 649
PleI	GAGTC	2 cut(s)	225, 785
PpsI	GAGTC	2 cut(s)	225, 785
PspFI	CCCAGC	1 cut(s)	805
PspPI	GGNCC	2 cut(s)	399, 808
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	33, 594
RsaNI	GTAC	2 cut(s)	32, 593
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	117, 164, 461
SatI	GCNGC	4 cut(s)	579, 628, 645, 648
Sau3AI	GATC	4 cut(s)	59, 359, 529, 736
Sau96I	GGNCC	2 cut(s)	399, 808
SchI	GAGTC	2 cut(s)	225, 785
ScrFI	CCNGG	2 cut(s)	205, 282
SfaNI	GCATC	2 cut(s)	601, 655
SfcI	CTRYAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	432, 740
SmoI	CTYRAG	2 cut(s)	432, 740
Sse9I	AATT	2 cut(s)	307, 392
SsiI	CCGC	2 cut(s)	63, 381
SspMI	CTAG	2 cut(s)	456, 473
StyD4I	CCNGG	2 cut(s)	203, 280
StyI	CCWWGG	3 cut(s)	366, 447, 774
TaaI	ACNGT	1 cut(s)	734
TaqI	TCGA	3 cut(s)	58, 498, 535
TasI	AATT	2 cut(s)	307, 392
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	347, 770
Tru1I	TTAA	3 cut(s)	117, 164, 461
Tru9I	TTAA	3 cut(s)	117, 164, 461
TseI	GCWGC	4 cut(s)	578, 627, 644, 647
TspDTI	ATGAA	5 cut(s)	225, 312, 632, 675, 747
XapI	RAATTY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	2 cut(s)	456, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.