Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Reverse (-)

59200279 .. 59201636

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTGATGAGGATCTCTCTGTTGTATTGTTGTCTGCAAGTGGAGATACAAATTACAAAGGTTGTGATGAAAGGAAAATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATGTGGCAACATGTGTTCAAGATCAGGAGGAGGACAAAGATCAATGTCGATTTAATGACAAATATTTCAGCTGCCACCGCTTGTTGTTGTGCCTCACCAGTCCCCCTCTCAACCAAAAGAAGACGGAAGCAATGCAATGATCTAGACGATAACAAGGATCTTTCAAAACCATCATCATCAACCCCGCAAAAGCAAAAGCCTCAGCTTGTTTGGCCTATGGAAATGAGTCCAAAGTTACAGATTGCTGTTAAACATTTAGAGGCTGAGGCTGAACCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGAACCATAGGCTTTATTTTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTAGCTTCTTCTTATCGGCCAATGCTTGGAAATTAAAGAATCCCGATGATGCTGCACTCCGAAAGTTTCATGAGGTGATGGAGTTGATGAATCAACAGAGGCTTAGAATAGCAAATACGCCAACCCTTACTGCAGAGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

225

Amino Acids

25.64

Weight (kDa)

9.55

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	561
AccII	CGCG	1 cut(s)	525
AciI	CCGC	2 cut(s)	213, 320
AclWI	GGATC	2 cut(s)	20, 300
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	82, 154, 300
AluBI	AGCT	6 cut(s)	89, 127, 133, 206, 340, 540
AluI	AGCT	6 cut(s)	89, 127, 133, 206, 340, 540
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	20, 300
AoxI	GGCC	2 cut(s)	347, 552
ApeKI	GCWGC	4 cut(s)	124, 206, 518, 587
AspLEI	GCGC	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	222, 622
BbsI	GAAGAC	1 cut(s)	262
BbvCI	CCTCAGC	2 cut(s)	336, 399
BbvI	GCAGC	4 cut(s)	136, 193, 530, 574
BccI	CCATC	2 cut(s)	313, 607
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	278, 537
BfmI	CTRYAG	1 cut(s)	666
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	4 cut(s)	125, 207, 519, 588
BlsI	GCNGC	4 cut(s)	126, 208, 520, 589
BmsI	GCATC	2 cut(s)	499, 574
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	2 cut(s)	336, 399
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	3 cut(s)	272, 277, 519
Bse8I	GATNNNNATC	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	3 cut(s)	272, 277, 519
BseMII	CTCAG	2 cut(s)	350, 390
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	136, 193, 530, 574
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	349, 554
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	665
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	349, 554
Bsp143I	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
BspACI	CCGC	2 cut(s)	213, 320
BspANI	GGCC	2 cut(s)	349, 554
BspCNI	CTCAG	2 cut(s)	349, 391
BspFNI	CGCG	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	2 cut(s)	20, 300
BsrDI	GCAATG	3 cut(s)	272, 277, 519
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	3 cut(s)	336, 399, 638
BstFNI	CGCG	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	6 cut(s)	15, 159, 177, 277, 295, 427
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 346, 518, 524
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	136, 193, 530, 574
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	3 cut(s)	12, 292, 424
BstYI	RGATCY	3 cut(s)	12, 292, 424
BsuRI	GGCC	2 cut(s)	349, 554
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	527
CviAII	CATG	3 cut(s)	136, 146, 605
DdeI	CTNAG	3 cut(s)	336, 399, 638
DpnI	GATC	6 cut(s)	14, 158, 176, 276, 294, 426
DpnII	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	3 cut(s)	139, 149, 608
FaiI	YATR	7 cut(s)	137, 147, 353, 483, 502, 504, 606
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	135, 145, 604
FauI	CCCGC	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	4 cut(s)	125, 207, 519, 588
Fsp4HI	GCNGC	4 cut(s)	125, 207, 519, 588
FspBI	CTAG	2 cut(s)	278, 537
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	4 cut(s)	125, 207, 519, 588
HaeIII	GGCC	2 cut(s)	349, 554
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	139, 149, 608
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HinfI	GANTC	3 cut(s)	361, 574, 625
HphI	GGTGA	2 cut(s)	222, 622
Hpy188I	TCNGA	3 cut(s)	116, 429, 596
Hpy188III	TCNNGA	6 cut(s)	154, 160, 278, 475, 578, 605
HpyAV	CCTTC	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	6 cut(s)	37, 270, 470, 512, 590, 668
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 346, 518, 524
HpyF3I	CTNAG	3 cut(s)	336, 399, 638
HpySE526I	ACGT	1 cut(s)	674
Hsp92II	CATG	3 cut(s)	139, 149, 608
HspAI	GCGC	1 cut(s)	525
Kzo9I	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
LmnI	GCTCC	2 cut(s)	86, 121
LpnPI	CCDG	4 cut(s)	123, 145, 246, 488
Lsp1109I	GCAGC	4 cut(s)	136, 193, 530, 574
LweI	GCATC	2 cut(s)	499, 574
MaeI	CTAG	2 cut(s)	278, 537
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	6 cut(s)	14, 158, 176, 276, 294, 426
MboI	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
MboII	GAAGA	2 cut(s)	267, 535
MflI	RGATCY	3 cut(s)	12, 292, 424
MluCI	AATT	3 cut(s)	51, 77, 566
MlyI	GAGTC	1 cut(s)	370
MseI	TTAA	4 cut(s)	188, 384, 495, 569
MspA1I	CMGCKG	2 cut(s)	127, 206
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 346, 518, 524
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
NlaIII	CATG	3 cut(s)	139, 149, 608
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	604
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	574, 625
PflMI	CCANNNNNTGG	1 cut(s)	561
PkrI	GCNGC	4 cut(s)	126, 208, 520, 589
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PscI	ACATGT	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	3 cut(s)	12, 292, 424
PvuII	CAGCTG	2 cut(s)	127, 206
SaqAI	TTAA	4 cut(s)	188, 384, 495, 569
SatI	GCNGC	4 cut(s)	125, 207, 519, 588
Sau3AI	GATC	6 cut(s)	12, 156, 174, 274, 292, 424
SchI	GAGTC	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	499, 574
SfcI	CTRYAG	1 cut(s)	666
Sse9I	AATT	3 cut(s)	51, 77, 566
SsiI	CCGC	2 cut(s)	213, 320
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	278, 537
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	51, 77, 566
TfiI	GAWTC	2 cut(s)	574, 625
Tru1I	TTAA	4 cut(s)	188, 384, 495, 569
Tru9I	TTAA	4 cut(s)	188, 384, 495, 569
TseI	GCWGC	4 cut(s)	124, 206, 518, 587
TspDTI	ATGAA	4 cut(s)	83, 446, 593, 638
TspGWI	ACGGA	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	2 cut(s)	278, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.