Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Reverse (-)

59980446 .. 59983252

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGGCAACATGTGTTCAAGATCAGGAGGAGGACAAAGATCAATGTAGATTTAACGACAAATATTTCAGTTGCCACCGCTTGTTGTTGTGCCTCACCAGTCCCCCTCTCAACCAAAAGAAGACGGAAGCAATGCAATGATCTAGACGATAACAAGGATCTTTCAAAACCATCATCATCAACCCCGCAAAAGCAAAAGCCTCAGCTTGTTTGGTCTATGGAAATGAGTCCAAAGTTACAGATTGCTGTTAAACATTTAGAGGCTGAGGCTGAACCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGCCGCAGCACGCGCTTCACATTCTAGCTTCTTCTTATCGGCCAATGCTTGGTAACTTGATGATGCTGCACTCCGAAAGTTTCATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

143

Amino Acids

16.24

Weight (kDa)

9.47

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	1 cut(s)	353
AciI	CCGC	3 cut(s)	78, 185, 344
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	19, 165
AluBI	AGCT	2 cut(s)	205, 368
AluI	AGCT	2 cut(s)	205, 368
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	346, 406
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	127
BbvCI	CCTCAGC	2 cut(s)	201, 264
BbvI	GCAGC	2 cut(s)	358, 393
BccI	CCATC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	143, 365
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	344, 347, 407
BlsI	GCNGC	3 cut(s)	345, 348, 408
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	2 cut(s)	201, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	98
Bse3DI	GCAATG	2 cut(s)	137, 142
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	2 cut(s)	137, 142
BseMII	CTCAG	2 cut(s)	215, 255
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	358, 393
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	21, 39, 139, 157, 289
BspACI	CCGC	3 cut(s)	78, 185, 344
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	214, 256
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	1 cut(s)	423
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	137, 142
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	5 cut(s)	21, 39, 139, 157, 289
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	201, 264
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	24, 42, 142, 160, 292
BstMBI	GATC	5 cut(s)	21, 39, 139, 157, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	14
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	358, 393
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	157, 289
BstYI	RGATCY	2 cut(s)	157, 289
BsuRI	GGCC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	355
CviAII	CATG	2 cut(s)	11, 424
CviJI	RGCY	8 cut(s)	199, 205, 263, 269, 310, 343, 368, 382
CviKI_1	RGCY	8 cut(s)	199, 205, 263, 269, 310, 343, 368, 382
DdeI	CTNAG	2 cut(s)	201, 264
DpnI	GATC	5 cut(s)	23, 41, 141, 159, 291
DpnII	GATC	5 cut(s)	21, 39, 139, 157, 289
EaeI	YGGCCR	1 cut(s)	380
FaeI	CATG	2 cut(s)	14, 427
FaiI	YATR	3 cut(s)	12, 218, 425
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	10, 423
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	344, 347, 407
Fsp4HI	GCNGC	3 cut(s)	344, 347, 407
FspBI	CTAG	2 cut(s)	143, 365
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	3 cut(s)	344, 347, 407
HaeIII	GGCC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	14, 427
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	294, 415
Hpy188III	TCNNGA	4 cut(s)	19, 25, 143, 424
HpyAV	CCTTC	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	135, 335, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	201, 264
Hsp92II	CATG	2 cut(s)	14, 427
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	21, 39, 139, 157, 289
LpnPI	CCDG	3 cut(s)	10, 111, 353
Lsp1109I	GCAGC	2 cut(s)	358, 393
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	143, 365
MaeIII	GTNAC	2 cut(s)	234, 392
MalI	GATC	5 cut(s)	23, 41, 141, 159, 291
MboI	GATC	5 cut(s)	21, 39, 139, 157, 289
MboII	GAAGA	2 cut(s)	132, 363
MflI	RGATCY	2 cut(s)	157, 289
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	8 cut(s)	21, 24, 103, 116, 210, 253, 259, 420
MseI	TTAA	2 cut(s)	53, 249
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	5 cut(s)	21, 39, 139, 157, 289
NlaIII	CATG	2 cut(s)	14, 427
NspI	RCATGY	1 cut(s)	14
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	345, 348, 408
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	157, 289
SaqAI	TTAA	2 cut(s)	53, 249
SatI	GCNGC	3 cut(s)	344, 347, 407
Sau3AI	GATC	5 cut(s)	21, 39, 139, 157, 289
SchI	GAGTC	1 cut(s)	235
SetI	ASST	3 cut(s)	207, 370, 431
SfaNI	GCATC	1 cut(s)	393
SsiI	CCGC	3 cut(s)	78, 185, 344
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	143, 365
TauI	GCSGC	1 cut(s)	346
Tru1I	TTAA	2 cut(s)	53, 249
Tru9I	TTAA	2 cut(s)	53, 249
TseI	GCWGC	2 cut(s)	346, 406
TspDTI	ATGAA	2 cut(s)	311, 412
TspGWI	ACGGA	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	2 cut(s)	143, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.