Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002895.1

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Reverse (-)

54778 .. 57141

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002895.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgaatatcgagaatacgattggtgggttgaggctcgatgatgatgagctaagacaagagcaagagatcgacgaagatcagtttccaattgggatgcgtgtgcttgtggtagatgatgatcgcactggcctcctcgacttggaagctgtgcttcttaactgccattatcatgtgttgtctgcaagtggagatacaaagcttgtgatgaagggaaaattgaatggagcttgtgattttctgctgaaacctgtcagagtggagcagctgaagctcatgtggcaacatgtgttcaagatcaggaggaggacaaagatcaatgtagatttaacgacaaatatttcagctgccaccgcttgttgttgtgcctcaccagtccccctctcaaccaaaagaagacggaagcaatgcaatgatctagacgataacaaggatctttcaaaaccatcatcatcaaccgcgcaaatgcaaaagcctcagcttgtttggtctaaggaaatgaatgatgctgcactccgaaagtttcatgaggtgatggagttgatgaatcaacagaggcttagaaatacgccaaccctctgtttcatcacaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

197

Amino Acids

22.49

Weight (kDa)

7.58

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	458
AciI	CCGC	2 cut(s)	351, 456
AclWI	GGATC	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	220, 292, 438
AluBI	AGCT	9 cut(s)	49, 146, 199, 227, 265, 271, 344, 478, 591
AluI	AGCT	9 cut(s)	49, 146, 199, 227, 265, 271, 344, 478, 591
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	262, 344, 506
AspLEI	GCGC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	360, 541
BbsI	GAAGAC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	274, 331, 493
BccI	CCATC	2 cut(s)	451, 526
BfaI	CTAG	2 cut(s)	416, 592
BisI	GCNGC	3 cut(s)	263, 345, 507
BlsI	GCNGC	3 cut(s)	264, 346, 508
BmsI	GCATC	2 cut(s)	84, 493
BpiI	GAAGAC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	130, 371
Bse3DI	GCAATG	2 cut(s)	410, 415
Bse8I	GATNNNNATC	1 cut(s)	117
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	2 cut(s)	410, 415
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	130, 371
BseRI	GAGGAG	2 cut(s)	122, 316
BseXI	GCAGC	3 cut(s)	274, 331, 493
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
BspACI	CCGC	2 cut(s)	351, 456
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	458
BspHI	TCATGA	1 cut(s)	523
BspPI	GGATC	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	410, 415
BsrI	ACTGG	2 cut(s)	130, 371
BssMI	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
BstDEI	CTNAG	4 cut(s)	50, 474, 489, 557
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	7 cut(s)	69, 79, 121, 297, 315, 415, 433
BstMBI	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 277, 350
BstNSI	RCATGY	1 cut(s)	287
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	3 cut(s)	274, 331, 493
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	460
CviAII	CATG	4 cut(s)	170, 274, 284, 524
DdeI	CTNAG	4 cut(s)	50, 474, 489, 557
DpnI	GATC	7 cut(s)	68, 78, 120, 296, 314, 414, 432
DpnII	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
Eco57I	CTGAAG	1 cut(s)	287
FaeI	CATG	4 cut(s)	173, 277, 287, 527
FaiI	YATR	4 cut(s)	171, 275, 285, 525
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	4 cut(s)	169, 273, 283, 523
Fnu4HI	GCNGC	3 cut(s)	263, 345, 507
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	263, 345, 507
FspBI	CTAG	2 cut(s)	416, 592
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	3 cut(s)	263, 345, 507
HaeIII	GGCC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	4 cut(s)	173, 277, 287, 527
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	544
HphI	GGTGA	2 cut(s)	360, 541
Hpy188I	TCNGA	2 cut(s)	254, 515
Hpy188III	TCNNGA	5 cut(s)	10, 292, 298, 416, 524
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	182, 408, 466, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 277, 350
HpyF3I	CTNAG	4 cut(s)	50, 474, 489, 557
Hsp92II	CATG	4 cut(s)	173, 277, 287, 527
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
LmnI	GCTCC	2 cut(s)	224, 259
LpnPI	CCDG	4 cut(s)	111, 261, 283, 384
Lsp1109I	GCAGC	3 cut(s)	274, 331, 493
LweI	GCATC	2 cut(s)	84, 493
MaeI	CTAG	2 cut(s)	416, 592
MalI	GATC	7 cut(s)	68, 78, 120, 296, 314, 414, 432
MboI	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
MboII	GAAGA	2 cut(s)	86, 405
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	87, 215
MseI	TTAA	2 cut(s)	156, 326
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	265, 344
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	3 cut(s)	268, 277, 350
NdeII	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
NlaIII	CATG	4 cut(s)	173, 277, 287, 527
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	264, 346, 508
PscI	ACATGT	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	2 cut(s)	265, 344
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	156, 326
SatI	GCNGC	3 cut(s)	263, 345, 507
Sau3AI	GATC	7 cut(s)	66, 76, 118, 294, 312, 412, 430
SfaNI	GCATC	2 cut(s)	84, 493
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	87, 215
SsiI	CCGC	2 cut(s)	351, 456
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	416, 592
TaqI	TCGA	4 cut(s)	9, 36, 69, 135
TasI	AATT	2 cut(s)	87, 215
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	156, 326
Tru9I	TTAA	2 cut(s)	156, 326
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	262, 344, 506
TspDTI	ATGAA	6 cut(s)	17, 221, 512, 512, 557, 571
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	2 cut(s)	416, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.