Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Reverse (-)

63686353 .. 63687780

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG411000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTGATGAGGATCTCTCTGTTGTATTGTTGTCTGCAAGTGGAGATACAAATTACAAAGGTTGTGATGAAAGGAAAATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATGTGGCAACATGTGTTCAAGATCAGGAGGAGGACAAAGATCAATGTCGATTTAATGACAAATATTTCAGCTGCCACCGCTTGTTGTTGTGCCTCACCAGTCCCCCTCTCAACCAAAAGAAGACGGAAGCAATGCAATGATCTAGACGATAACAAGGATCTTTCAAAACCATCATCATCAACCCCGCAAAAGCAAAAGCCTCAGCTTGTTTGGTCTATGGAAATGAGTCCAAAGTTACAGATTGCTGTTAAACATTTAGGCAATGTCGACAAGGCTGAGGCTGAACCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGAACCATAGGCTTTATTTTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTAGCTTCTTCTTATCGGCCAATGCTTGCTTTTGCTTAGTAGAACGTACGTTTTGTAAGTCTGTCTTATATTATTGTTTGGATGCAGATGATGCTGCACTCCGAAAGTTTCATGAGGTGATGGAGTTGATGAATCAACAGAGGCTTAGAATAGCAAATACGCCAACCCTTCTGCAGAGACGTAGGCTTTATGTTCAAAGAAGGGGCTCACTCTCGCAATCCAAACCGCTGATCGAACCCATAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

265

Amino Acids

30.25

Weight (kDa)

9.54

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	537
AciI	CCGC	3 cut(s)	213, 320, 773
AclWI	GGATC	2 cut(s)	20, 300
AcoI	YGGCCR	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	791
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	82, 154, 300, 743
AluBI	AGCT	6 cut(s)	89, 127, 133, 206, 340, 552
AluI	AGCT	6 cut(s)	89, 127, 133, 206, 340, 552
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	20, 300
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	124, 206, 530, 641
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	222, 676
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	262
BbvCI	CCTCAGC	2 cut(s)	336, 411
BbvI	GCAGC	4 cut(s)	136, 193, 542, 628
BccI	CCATC	3 cut(s)	313, 661, 785
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	2 cut(s)	278, 549
BfmI	CTRYAG	1 cut(s)	719
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	4 cut(s)	125, 207, 531, 642
BlsI	GCNGC	4 cut(s)	126, 208, 532, 643
BmsI	GCATC	3 cut(s)	511, 619, 628
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	2 cut(s)	336, 411
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	791
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	4 cut(s)	272, 277, 403, 531
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	791
BseMI	GCAATG	4 cut(s)	272, 277, 403, 531
BseMII	CTCAG	2 cut(s)	350, 402
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	136, 193, 542, 628
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	566
BsiWI	CGTACG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	791
BsmAI	GTCTC	1 cut(s)	718
BsmBI	CGTCTC	1 cut(s)	718
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
BspACI	CCGC	3 cut(s)	213, 320, 773
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	349, 403
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	2 cut(s)	20, 300
BsrDI	GCAATG	4 cut(s)	272, 277, 403, 531
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	535, 574
BstDEI	CTNAG	4 cut(s)	336, 411, 583, 692
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	7 cut(s)	15, 159, 177, 277, 295, 439, 780
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 530, 536, 638
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	719
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	136, 193, 542, 628
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	3 cut(s)	12, 292, 436
BstYI	RGATCY	3 cut(s)	12, 292, 436
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	535, 574
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	3 cut(s)	136, 146, 659
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	336, 411, 583, 692
DpnI	GATC	7 cut(s)	14, 158, 176, 276, 294, 438, 779
DpnII	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
DraI	TTTAAA	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	755
Esp3I	CGTCTC	1 cut(s)	718
FaeI	CATG	3 cut(s)	139, 149, 662
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	135, 145, 658
FauI	CCCGC	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	125, 207, 531, 642
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	125, 207, 531, 642
FspBI	CTAG	2 cut(s)	278, 549
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	4 cut(s)	125, 207, 531, 642
HaeIII	GGCC	1 cut(s)	566
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	139, 149, 662
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	361, 679
HphI	GGTGA	2 cut(s)	222, 676
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	116, 441, 650
Hpy188III	TCNNGA	5 cut(s)	154, 160, 278, 487, 659
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	446, 725, 741
HpyCH4IV	ACGT	3 cut(s)	592, 596, 727
HpyCH4V	TGCA	7 cut(s)	37, 270, 482, 524, 632, 644, 721
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 530, 536, 638
HpyF3I	CTNAG	4 cut(s)	336, 411, 583, 692
HpySE526I	ACGT	3 cut(s)	592, 596, 727
Hsp92II	CATG	3 cut(s)	139, 149, 662
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
LmnI	GCTCC	2 cut(s)	86, 121
LpnPI	CCDG	4 cut(s)	123, 145, 246, 500
Lsp1109I	GCAGC	4 cut(s)	136, 193, 542, 628
LweI	GCATC	3 cut(s)	511, 619, 628
MaeI	CTAG	2 cut(s)	278, 549
MaeII	ACGT	3 cut(s)	592, 596, 727
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	7 cut(s)	14, 158, 176, 276, 294, 438, 779
MboI	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
MboII	GAAGA	2 cut(s)	267, 547
MflI	RGATCY	3 cut(s)	12, 292, 436
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	2 cut(s)	51, 77
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	9 cut(s)	3, 156, 159, 238, 251, 345, 406, 655, 681
MseI	TTAA	4 cut(s)	188, 384, 507, 796
MspA1I	CMGCKG	3 cut(s)	127, 206, 775
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	6 cut(s)	130, 139, 212, 530, 536, 638
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
NlaIII	CATG	3 cut(s)	139, 149, 662
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	658
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	679
Pfl23II	CGTACG	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	126, 208, 532, 643
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PscI	ACATGT	1 cut(s)	145
PspLI	CGTACG	1 cut(s)	593
PstI	CTGCAG	1 cut(s)	723
PsuI	RGATCY	3 cut(s)	12, 292, 436
PvuII	CAGCTG	2 cut(s)	127, 206
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	188, 384, 507, 796
SatI	GCNGC	4 cut(s)	125, 207, 531, 642
Sau3AI	GATC	7 cut(s)	12, 156, 174, 274, 292, 436, 777
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	3 cut(s)	511, 619, 628
SfcI	CTRYAG	1 cut(s)	719
Sse9I	AATT	2 cut(s)	51, 77
SsiI	CCGC	3 cut(s)	213, 320, 773
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	278, 549
TaiI	ACGT	3 cut(s)	595, 599, 730
TaqI	TCGA	3 cut(s)	183, 402, 780
TasI	AATT	2 cut(s)	51, 77
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	4 cut(s)	188, 384, 507, 796
Tru9I	TTAA	4 cut(s)	188, 384, 507, 796
TseI	GCWGC	4 cut(s)	124, 206, 530, 641
TspDTI	ATGAA	4 cut(s)	83, 458, 647, 692
TspGWI	ACGGA	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	278, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.