Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Forward (+)

29029124 .. 29031572

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATATCGAGAATATGATAGGTGGACTGAGGCTTGATGATGATGAGCCGAGACAACAATCAAGAGAGGACGATCAATTTCCAGTTGGGATGCGTGTGCTTGTGGTTGATGATGATCGCACTTCCCTCCTGGACTTGAAGGCTATGCTCTTTACTGCCATTATCATGTTACCAGTAGCAGCCATCAGATTCGGCATTGAGGACGTTGATAAAAGTAAGGACAAGTTTGAGCTGGTTATGACTGCTGTCGATATGTCAACATTGACGGGTTCAGTGTTGTCTGCAAGTGAGGATACACAGCTTGTGATGAAAGGAATATCGAATGGAGCCTGTGATTATCTGCTGAAACCTGTTAGAGTGGAGCAGCTGAAGCTCATCTGGCAACATGTGTTCAGGATCAGGAGGAGGACAGAGAACAATGTTGATTTAAAGGAAAATATTTCTGTTGCCGCCGCTTGTTATTGTTGTGCCTCGCCAATCTCCCTCTCAACCAAAAGAAGACGGATGCAGAACAATACGGATCTTTTAAAATCATCATCATCAACCCTGCTAAAGCAAAACACCGATCGGCTTGTTAGGTTTATGAAAATGAGTCGTCAAAAGTTACAAGCTGATATCAACAACGCTGAGGCTGTTGCAGATCCGATTACAGTGCTAGCAACAGAAAAAATGAGGGCAATCCAGAACCGTAGGCTGTTTTCTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTTCTCCACATCTGCCAATGGTTGATGATCTTTCCCTCCGAAACGAGGAGTTGAATCGGCAGAATAGGCGTCTGCAGTTCCTGCAGGATCAATGTAGGCTTTATAGAAGTGGCTCACTCTCACAATACAAACCGCATATCGAACCCATAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

300

Amino Acids

34.02

Weight (kDa)

8.23

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	732
AciI	CCGC	3 cut(s)	450, 453, 875
AclWI	GGATC	4 cut(s)	404, 528, 635, 837
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	811
AfiI	CCNNNNNNNGG	1 cut(s)	787
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	139, 796
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	232, 301, 367, 373, 611
AluI	AGCT	5 cut(s)	232, 301, 367, 373, 611
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	4 cut(s)	404, 528, 635, 837
AlwNI	CAGNNNCTG	1 cut(s)	823
ApeKI	GCWGC	3 cut(s)	179, 364, 725
AspLEI	GCGC	1 cut(s)	734
AsuNHI	GCTAGC	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	505
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	191, 376, 737
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	2 cut(s)	815, 824
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	5 cut(s)	180, 365, 450, 453, 726
BlsI	GCNGC	5 cut(s)	181, 366, 451, 454, 727
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	81, 495, 706
BmtI	GCTAGC	1 cut(s)	659
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse1I	ACTGG	2 cut(s)	83, 173
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	96, 510
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	20, 618
BseNI	ACTGG	2 cut(s)	83, 173
BseRI	GAGGAG	2 cut(s)	418, 803
BseXI	GCAGC	3 cut(s)	191, 376, 737
Bsh1236I	CGCG	1 cut(s)	732
Bsh1285I	CGRYCG	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	1 cut(s)	46
Bsp143I	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
BspACI	CCGC	3 cut(s)	450, 453, 875
BspCNI	CTCAG	2 cut(s)	21, 619
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	2 cut(s)	819, 828
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	4 cut(s)	404, 528, 635, 837
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	83, 173
BssMI	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
BssNI	GRCGYC	1 cut(s)	811
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	652, 689
BstACI	GRCGYC	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	657, 730
BstDEI	CTNAG	2 cut(s)	29, 627
BstF5I	GGATG	2 cut(s)	96, 510
BstFNI	CGCG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	8 cut(s)	76, 118, 399, 523, 568, 643, 772, 832
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	6 cut(s)	370, 379, 725, 731, 808, 823
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	815, 824
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	3 cut(s)	191, 376, 737
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	2 cut(s)	520, 640
BstYI	RGATCY	2 cut(s)	520, 640
BsuI	GTATCC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	96, 510
BtsIMutI	CAGTG	2 cut(s)	279, 657
Cac8I	GCNNGC	2 cut(s)	657, 730
CaiI	CAGNNNCTG	1 cut(s)	823
CfoI	GCGC	1 cut(s)	734
CseI	GACGC	1 cut(s)	800
CviAII	CATG	2 cut(s)	166, 386
DdeI	CTNAG	2 cut(s)	29, 627
DpnI	GATC	8 cut(s)	75, 117, 398, 522, 567, 642, 771, 831
DpnII	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
DraI	TTTAAA	2 cut(s)	429, 528
Eco32I	GATATC	2 cut(s)	7, 616
Eco57I	CTGAAG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	2 cut(s)	7, 616
FaeI	CATG	2 cut(s)	169, 389
FatI	CATG	2 cut(s)	165, 385
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	180, 365, 450, 453, 726
FokI	GGATG	2 cut(s)	103, 517
Fsp4HI	GCNGC	5 cut(s)	180, 365, 450, 453, 726
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	5 cut(s)	180, 365, 450, 453, 726
HgaI	GACGC	1 cut(s)	800
HhaI	GCGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	2 cut(s)	169, 389
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	189, 592, 796
Hpy166II	GTNNAC	2 cut(s)	26, 258
Hpy188I	TCNGA	3 cut(s)	188, 645, 782
Hpy188III	TCNNGA	5 cut(s)	10, 63, 394, 400, 682
Hpy8I	GTNNAC	2 cut(s)	26, 258
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	652, 689
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	6 cut(s)	284, 508, 638, 719, 817, 826
HpyF10VI	GCNNNNNNNGC	6 cut(s)	370, 379, 725, 731, 808, 823
HpyF3I	CTNAG	2 cut(s)	29, 627
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	2 cut(s)	169, 389
HspAI	GCGC	1 cut(s)	732
Kzo9I	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
LmnI	GCTCC	2 cut(s)	326, 361
Lsp1109I	GCAGC	3 cut(s)	191, 376, 737
LweI	GCATC	3 cut(s)	81, 495, 706
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	168, 603
MalI	GATC	8 cut(s)	75, 117, 398, 522, 567, 642, 771, 831
MboI	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
MboII	GAAGA	2 cut(s)	510, 735
MflI	RGATCY	2 cut(s)	520, 640
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	601
MseI	TTAA	3 cut(s)	428, 527, 898
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	370, 379, 725, 731, 808, 823
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	2 cut(s)	169, 389
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	75
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	189, 796
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	181, 366, 451, 454, 727
Ple19I	CGATCG	1 cut(s)	568
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
PscI	ACATGT	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	328
PstI	CTGCAG	2 cut(s)	819, 828
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	2 cut(s)	520, 640
PvuI	CGATCG	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	428, 527, 898
SatI	GCNGC	5 cut(s)	180, 365, 450, 453, 726
Sau3AI	GATC	8 cut(s)	73, 115, 396, 520, 565, 640, 769, 829
SbfI	CCTGCAGG	1 cut(s)	828
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	131
SdaI	CCTGCAGG	1 cut(s)	828
SetI	ASST	9 cut(s)	25, 207, 234, 303, 352, 369, 375, 581, 613
SfaNI	GCATC	3 cut(s)	81, 495, 706
SfcI	CTRYAG	2 cut(s)	815, 824
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse8387I	CCTGCAGG	1 cut(s)	828
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	450, 453, 875
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	652, 689
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	9, 249, 320, 882
TasI	AATT	1 cut(s)	77
TauI	GCSGC	2 cut(s)	452, 455
TfiI	GAWTC	2 cut(s)	189, 796
Tru1I	TTAA	3 cut(s)	428, 527, 898
Tru9I	TTAA	3 cut(s)	428, 527, 898
TscAI	CASTG	2 cut(s)	279, 657
TseI	GCWGC	3 cut(s)	179, 364, 725
TspDTI	ATGAA	2 cut(s)	323, 599
TspGWI	ACGGA	2 cut(s)	517, 533
TspRI	CASTG	2 cut(s)	279, 657
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.