Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Forward (+)

9104739 .. 9107203

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAATATCGAGAATATGATTGGTGGGTTGAGGCTTGATGATGATGAGCCAAGAGTAAGAGCAAGAGATCGACGAAGATCAGTTTCCAATTGGGATGCGTGTGCTTGTGGTAGATGTCTAGATGATGATCGCACTGGCCTCCTCGACTTGGAAGCTGTGCTTCTTTACTGCCATTATCATGTGTTGTCTGCAAGTGGAGATACAAAGCTTGTGATGAAAGGAATATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATCTGGCAACAGGTGTTCAAGATCAGGAGGAGGACAAAGATCAATATCGATTTAACGACAAATATTTCAGCTGTAAGACGGAAGCAGTGCAATGATCTAGACGATAACAAGGATCTTTCAAAAACATCATCATCAACCCCGCAAAAGCAAAAGCCTCAGCTTGTTTGGTCTATGGAAATGAGTCAAAAGTTACAGACTGCTATTCAACATTTAGGCAATGTCGACAAGGCTGAGGCTGAACCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGAACCATAGGCTTTATTTTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTAATGATGCTGCACTCCGAAAGTTTCATGAGGTGATGGAGTTGATGAATCAACAGAGGCTTAGAATAGCACATACGCCAACCCTTCTGCAGAGACGTAGGCTTTATGTTCAAAGAAGGGGCTCGCTCTCACAATCCAAACTGCTGATTGAACCCATAGATGCAGCAGCAGCTTTAGGCCTAGGATTGTTTAGCACCAATAATGGCCTAATGGGTGTCAAAGACTCAAAACTTACCATGAATTGCAATAATATGCCTCTTGGTCGACGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

308

Amino Acids

34.74

Weight (kDa)

9.53

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	504, 913
AccII	CGCG	1 cut(s)	639
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	6 cut(s)	229, 301, 402, 488, 761, 800
AluBI	AGCT	8 cut(s)	155, 208, 236, 274, 280, 353, 442, 821
AluI	AGCT	8 cut(s)	155, 208, 236, 274, 280, 353, 442, 821
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	3 cut(s)	136, 826, 853
ApeKI	GCWGC	6 cut(s)	271, 632, 659, 812, 815, 818
AspA2I	CCTAGG	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	694
AvrII	CCTAGG	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	773
BbvCI	CCTCAGC	2 cut(s)	438, 513
BbvI	GCAGC	6 cut(s)	283, 644, 646, 824, 827, 830
BccI	CCATC	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	736
BfaI	CTAG	3 cut(s)	119, 380, 830
BfmI	CTRYAG	1 cut(s)	737
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	6 cut(s)	272, 633, 660, 813, 816, 819
BlnI	CCTAGG	1 cut(s)	829
BlsI	GCNGC	6 cut(s)	273, 634, 661, 814, 817, 820
BmsI	GCATC	4 cut(s)	85, 613, 646, 799
Bpu10I	CCTNAGC	2 cut(s)	438, 513
Bsa29I	ATCGAT	1 cut(s)	330
BsaBI	GATNNNNATC	2 cut(s)	126, 326
BsaJI	CCNNGG	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	3 cut(s)	379, 505, 633
Bse8I	GATNNNNATC	2 cut(s)	126, 326
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	2 cut(s)	126, 326
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	3 cut(s)	379, 505, 633
BseMII	CTCAG	2 cut(s)	452, 504
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	131, 325
BseXI	GCAGC	6 cut(s)	283, 644, 646, 824, 827, 830
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	138, 828, 855
BshVI	ATCGAT	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	736
BsmBI	CGTCTC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	138, 828, 855
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp143I	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	3 cut(s)	138, 828, 855
BspCNI	CTCAG	2 cut(s)	451, 505
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	676
BspMAI	CTGCAG	1 cut(s)	741
BspPI	GGATC	1 cut(s)	402
BsrDI	GCAATG	3 cut(s)	379, 505, 633
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
BssT1I	CCWWGG	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	637, 773
BstDEI	CTNAG	3 cut(s)	438, 513, 710
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	8 cut(s)	70, 80, 130, 306, 324, 379, 397, 541
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 286, 632, 638, 818
BstSFI	CTRYAG	1 cut(s)	737
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	6 cut(s)	283, 644, 646, 824, 827, 830
BstX2I	RGATCY	2 cut(s)	394, 538
BstYI	RGATCY	2 cut(s)	394, 538
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	138, 828, 855
BsuTUI	ATCGAT	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	132, 374
Cac8I	GCNNGC	2 cut(s)	637, 773
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	641
ClaI	ATCGAT	1 cut(s)	330
CviAII	CATG	3 cut(s)	179, 677, 886
DdeI	CTNAG	3 cut(s)	438, 513, 710
DpnI	GATC	8 cut(s)	69, 79, 129, 305, 323, 378, 396, 540
DpnII	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
DraI	TTTAAA	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	829
Eco147I	AGGCCT	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	829
EcoT38I	GRGCYC	1 cut(s)	773
ErhI	CCWWGG	1 cut(s)	829
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	3 cut(s)	182, 680, 889
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	3 cut(s)	178, 676, 885
FauI	CCCGC	1 cut(s)	429
FauNDI	CATATG	1 cut(s)	616
FblI	GTMKAC	2 cut(s)	504, 913
Fnu4HI	GCNGC	6 cut(s)	272, 633, 660, 813, 816, 819
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	773
Fsp4HI	GCNGC	6 cut(s)	272, 633, 660, 813, 816, 819
FspBI	CTAG	3 cut(s)	119, 380, 830
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	6 cut(s)	272, 633, 660, 813, 816, 819
HaeIII	GGCC	3 cut(s)	138, 828, 855
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	182, 680, 889
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	505, 914
HindII	GTYRAC	2 cut(s)	505, 914
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	463, 697, 872
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	2 cut(s)	505, 914
Hpy188I	TCNGA	3 cut(s)	263, 543, 668
Hpy188III	TCNNGA	7 cut(s)	10, 119, 301, 307, 380, 589, 677
Hpy8I	GTNNAC	2 cut(s)	505, 914
Hpy99I	CGWCG	2 cut(s)	75, 918
HpyAV	CCTTC	3 cut(s)	548, 743, 759
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	8 cut(s)	191, 372, 584, 626, 662, 739, 812, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 286, 632, 638, 818
HpyF3I	CTNAG	3 cut(s)	438, 513, 710
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	3 cut(s)	182, 680, 889
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
LmnI	GCTCC	2 cut(s)	233, 268
LpnPI	CCDG	6 cut(s)	120, 270, 271, 278, 292, 602
Lsp1109I	GCAGC	6 cut(s)	283, 644, 646, 824, 827, 830
LweI	GCATC	4 cut(s)	85, 613, 646, 799
MaeI	CTAG	3 cut(s)	119, 380, 830
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	8 cut(s)	69, 79, 129, 305, 323, 378, 396, 540
MboI	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
MboII	GAAGA	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	88
MflI	RGATCY	2 cut(s)	394, 538
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	2 cut(s)	88, 889
MlyI	GAGTC	2 cut(s)	472, 866
MseI	TTAA	2 cut(s)	335, 609
MslI	CAYNNNNRTG	2 cut(s)	177, 651
MspA1I	CMGCKG	2 cut(s)	274, 353
MunI	CAATTG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	5 cut(s)	277, 286, 632, 638, 818
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
NlaIII	CATG	3 cut(s)	182, 680, 889
PagI	TCATGA	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	6 cut(s)	273, 634, 661, 814, 817, 820
PleI	GAGTC	2 cut(s)	471, 866
PpsI	GAGTC	2 cut(s)	471, 866
PstI	CTGCAG	1 cut(s)	741
PsuI	RGATCY	2 cut(s)	394, 538
PvuII	CAGCTG	2 cut(s)	274, 353
RseI	CAYNNNNRTG	2 cut(s)	177, 651
SalI	GTCGAC	2 cut(s)	503, 912
SaqAI	TTAA	2 cut(s)	335, 609
SatI	GCNGC	6 cut(s)	272, 633, 660, 813, 816, 819
Sau3AI	GATC	8 cut(s)	67, 77, 127, 303, 321, 376, 394, 538
SchI	GAGTC	2 cut(s)	472, 866
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	4 cut(s)	85, 613, 646, 799
SfcI	CTRYAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	177, 651
Sse9I	AATT	2 cut(s)	88, 889
SseBI	AGGCCT	1 cut(s)	828
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	2 cut(s)	225, 346
SspMI	CTAG	3 cut(s)	119, 380, 830
StuI	AGGCCT	1 cut(s)	828
StyI	CCWWGG	1 cut(s)	829
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	6 cut(s)	9, 70, 144, 330, 504, 913
TasI	AATT	2 cut(s)	88, 889
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	2 cut(s)	335, 609
Tru9I	TTAA	2 cut(s)	335, 609
TscAI	CASTG	2 cut(s)	139, 374
TseI	GCWGC	6 cut(s)	271, 632, 659, 812, 815, 818
TspDTI	ATGAA	6 cut(s)	17, 230, 560, 665, 710, 902
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	2 cut(s)	139, 374
XbaI	TCTAGA	2 cut(s)	118, 379
XmaJI	CCTAGG	1 cut(s)	829
XmiI	GTMKAC	2 cut(s)	504, 913
XspI	CTAG	3 cut(s)	119, 380, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.