Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Reverse (-)

60084602 .. 60085759

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTAGTGTTGTCTGCAAGTGGAGATACAAAGCTTGTGATGAAAGGACAATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATGTGGCAACATGTGTTCAAGATCAGGAGGAGGACAAAGATCAATGTCGATTTAACGACAAATATTTCAGCTGCGCGCTACCGCTTGTTGTTGTGCCTCACCAGCAATGTCGACAAGGCTGAGGCTGAATCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGCAGCCGCAGCACGCGCTTCACATTCTAGCTTCTTCTTATTGGCCAATGCTTGATGATGCTGCACTCCGAAAGTTTCATGAGGTGATGAAGTTGATGAATCAACAGAGGCTTAGAATAGCAAATACGCCAACCCTTCTGCAGAGACGTAGGCTTTATGTTCAAAGAAGGGGCTCGCTCTCGCAATCCAAACCGCTGATCGAACCCATAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

173

Amino Acids

19.79

Weight (kDa)

10.0

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	2 cut(s)	184, 320
AciI	CCGC	3 cut(s)	190, 311, 497
AcoI	YGGCCR	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	55, 127, 467
AluBI	AGCT	6 cut(s)	34, 62, 100, 106, 179, 335
AluI	AGCT	6 cut(s)	34, 62, 100, 106, 179, 335
Alw26I	GTCTC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	5 cut(s)	97, 179, 307, 313, 365
AspLEI	GCGC	3 cut(s)	184, 186, 322
AsuHPI	GGTGA	2 cut(s)	199, 400
BalI	TGGCCA	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	5 cut(s)	109, 166, 319, 325, 352
BccI	CCATC	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	6 cut(s)	98, 180, 308, 311, 314, 366
BlsI	GCNGC	6 cut(s)	99, 181, 309, 312, 315, 367
BmsI	GCATC	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	219
BsePI	GCGCGC	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	5 cut(s)	109, 166, 319, 325, 352
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	184, 320
BshFI	GGCC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	129, 147, 253, 501
BspACI	CCGC	3 cut(s)	190, 311, 497
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	184, 320
BspHI	TCATGA	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	220
BssHII	GCGCGC	1 cut(s)	182
BssMI	GATC	4 cut(s)	129, 147, 253, 501
BstC8I	GCNNGC	3 cut(s)	184, 318, 479
BstDEI	CTNAG	2 cut(s)	228, 416
BstFNI	CGCG	2 cut(s)	184, 320
BstHHI	GCGC	3 cut(s)	184, 186, 322
BstKTI	GATC	4 cut(s)	132, 150, 256, 504
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	4 cut(s)	129, 147, 253, 501
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 112, 210, 313, 319
BstNSI	RCATGY	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	443
BstUI	CGCG	2 cut(s)	184, 320
BstV1I	GCAGC	5 cut(s)	109, 166, 319, 325, 352
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	184, 318, 479
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	3 cut(s)	184, 186, 322
CviAII	CATG	3 cut(s)	109, 119, 383
DdeI	CTNAG	2 cut(s)	228, 416
DpnI	GATC	4 cut(s)	131, 149, 255, 503
DpnII	GATC	4 cut(s)	129, 147, 253, 501
EaeI	YGGCCR	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	3 cut(s)	112, 122, 386
FaiI	YATR	5 cut(s)	110, 120, 384, 462, 512
FatI	CATG	3 cut(s)	108, 118, 382
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	98, 180, 308, 311, 314, 366
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	6 cut(s)	98, 180, 308, 311, 314, 366
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	3 cut(s)	183, 185, 321
GluI	GCNGC	6 cut(s)	98, 180, 308, 311, 314, 366
HaeIII	GGCC	1 cut(s)	349
HhaI	GCGC	3 cut(s)	184, 186, 322
Hin1II	CATG	3 cut(s)	112, 122, 386
Hin6I	GCGC	3 cut(s)	182, 184, 320
HinP1I	GCGC	3 cut(s)	182, 184, 320
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	2 cut(s)	236, 403
HphI	GGTGA	2 cut(s)	199, 400
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	89, 258, 374
Hpy188III	TCNNGA	3 cut(s)	127, 133, 383
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	263, 449, 465
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	4 cut(s)	17, 299, 368, 445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 112, 210, 313, 319
HpyF3I	CTNAG	2 cut(s)	228, 416
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	112, 122, 386
HspAI	GCGC	3 cut(s)	182, 184, 320
Kzo9I	GATC	4 cut(s)	129, 147, 253, 501
LmnI	GCTCC	2 cut(s)	59, 94
LpnPI	CCDG	4 cut(s)	96, 118, 223, 317
Lsp1109I	GCAGC	5 cut(s)	109, 166, 319, 325, 352
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	451
MalI	GATC	4 cut(s)	131, 149, 255, 503
MboI	GATC	4 cut(s)	129, 147, 253, 501
MboII	GAAGA	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	1 cut(s)	349
MluCI	AATT	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	349
MnlI	CCTC	6 cut(s)	129, 132, 215, 223, 379, 405
Mox20I	TGGCCA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	2 cut(s)	161, 520
Msp20I	TGGCCA	1 cut(s)	349
MspA1I	CMGCKG	3 cut(s)	100, 179, 499
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	2 cut(s)	184, 320
MwoI	GCNNNNNNNGC	5 cut(s)	103, 112, 210, 313, 319
NdeII	GATC	4 cut(s)	129, 147, 253, 501
NlaIII	CATG	3 cut(s)	112, 122, 386
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	382
PauI	GCGCGC	1 cut(s)	182
PciI	ACATGT	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	236, 403
PkrI	GCNGC	6 cut(s)	99, 181, 309, 312, 315, 367
PscI	ACATGT	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	253
PteI	GCGCGC	1 cut(s)	182
PvuII	CAGCTG	2 cut(s)	100, 179
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	161, 520
SatI	GCNGC	6 cut(s)	98, 180, 308, 311, 314, 366
Sau3AI	GATC	4 cut(s)	129, 147, 253, 501
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	9 cut(s)	36, 64, 85, 102, 108, 181, 337, 390, 454
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	3 cut(s)	190, 311, 497
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	332
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	156, 219, 504
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	236, 403
Tru1I	TTAA	2 cut(s)	161, 520
Tru9I	TTAA	2 cut(s)	161, 520
TseI	GCWGC	5 cut(s)	97, 179, 307, 313, 365
TspDTI	ATGAA	5 cut(s)	56, 275, 371, 407, 416
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.