Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Reverse (-)

44354904 .. 44405497

Gene Structure 50594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCAACATCCACTATGCAATCAATCCTTGGAAGCTCTGTCGCTTATGGAAGAGTTGCAGGCAAGAACAGATCCCTGAACCTGCAGAGTACTGTTCCTGCTAGTTATGCAGTTTCAAGCTATCTCAGGGTTCGCTCTATGGCAGAGGATGGTCAAAAGAAGCAACCAATAACTGTAACAAAAGCCTCAAAGGATCCCCAGCCTGCAGCTTCTCCACCATCTCCGAAGTTTTCAGACGTGTTTGCATTCAGCGGGCCGGCACCTGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCGGCTCTATCTGTCGAACTCTTCAAGGGGCAAGATTTGTTTGCTCAGATATCCAACGGCCCCGGAGTACCATTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCTTTACCTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAATATGTGACTGGTCGAACCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

188

Amino Acids

19.7

Weight (kDa)

9.64

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	87 - 180	9.7e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	262
AciI	CCGC	2 cut(s)	255, 308
AclWI	GGATC	4 cut(s)	69, 191, 204, 473
AcoI	YGGCCR	1 cut(s)	504
AfaI	GTAC	2 cut(s)	94, 375
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	120, 331, 433
AjiI	CACGTC	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	5 cut(s)	39, 123, 212, 487, 524
AluI	AGCT	5 cut(s)	39, 123, 212, 487, 524
Alw21I	GWGCWC	1 cut(s)	489
AlwI	GGATC	4 cut(s)	69, 191, 204, 473
AoxI	GGCC	4 cut(s)	257, 364, 504, 528
ApeKI	GCWGC	2 cut(s)	5, 209
AspS9I	GGNCC	2 cut(s)	257, 365
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	146, 229
BceAI	ACGGC	2 cut(s)	295, 379
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	2 cut(s)	105, 560
BfmI	CTRYAG	2 cut(s)	86, 207
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	6, 210, 309
BlsI	GCNGC	3 cut(s)	7, 211, 310
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	257, 365
BmiI	GGNNCC	4 cut(s)	198, 264, 367, 423
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	422, 469
BpuMI	CCSGG	1 cut(s)	369
BsaJI	CCNNGG	5 cut(s)	31, 367, 417, 444, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	5 cut(s)	31, 367, 417, 444, 474
BseGI	GGATG	4 cut(s)	11, 157, 413, 484
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	142, 258, 365
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	201
BshFI	GGCC	4 cut(s)	259, 366, 506, 530
BshNI	GGYRCC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	260, 369
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	4 cut(s)	259, 366, 506, 530
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	74, 196, 465
BspACI	CCGC	2 cut(s)	255, 308
BspANI	GGCC	4 cut(s)	259, 366, 506, 530
BspCNI	CTCAG	3 cut(s)	141, 259, 364
BspLI	GGNNCC	4 cut(s)	198, 264, 367, 423
BspMAI	CTGCAG	2 cut(s)	90, 211
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	4 cut(s)	69, 191, 204, 473
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	5 cut(s)	31, 367, 417, 444, 474
BssMI	GATC	3 cut(s)	74, 196, 465
BssT1I	CCWWGG	2 cut(s)	31, 417
Bst4CI	ACNGT	3 cut(s)	97, 178, 445
Bst6I	CTCTTC	2 cut(s)	49, 332
BstC8I	GCNNGC	6 cut(s)	64, 207, 257, 261, 284, 288
BstDEI	CTNAG	3 cut(s)	128, 267, 351
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	11, 157, 413, 484
BstKTI	GATC	3 cut(s)	77, 199, 468
BstMBI	GATC	3 cut(s)	74, 196, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	2 cut(s)	86, 207
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	74, 196, 465
BstYI	RGATCY	3 cut(s)	74, 196, 465
BsuRI	GGCC	4 cut(s)	259, 366, 506, 530
BtgI	CCRYGG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	11, 157, 413, 484
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	6 cut(s)	64, 207, 257, 261, 284, 288
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	257, 365
Csp6I	GTAC	2 cut(s)	93, 374
CviAII	CATG	1 cut(s)	508
CviQI	GTAC	2 cut(s)	93, 374
DdeI	CTNAG	3 cut(s)	128, 267, 351
DpnI	GATC	3 cut(s)	76, 198, 467
DpnII	GATC	3 cut(s)	74, 196, 465
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	49, 332
EarI	CTCTTC	2 cut(s)	49, 332
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	31, 417
Eco24I	GRGCYC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	31, 417
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	2 cut(s)	31, 417
FaeI	CATG	1 cut(s)	511
FaiI	YATR	6 cut(s)	20, 51, 111, 143, 509, 543
FatI	CATG	1 cut(s)	507
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	6, 210, 309
FokI	GGATG	3 cut(s)	164, 400, 491
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	6, 210, 309
FspBI	CTAG	2 cut(s)	105, 560
GluI	GCNGC	3 cut(s)	6, 210, 309
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	259, 366, 506, 530
HapII	CCGG	2 cut(s)	260, 369
Hin1II	CATG	1 cut(s)	511
HinfI	GANTC	2 cut(s)	273, 449
HpaII	CCGG	2 cut(s)	260, 369
HphI	GGTGA	1 cut(s)	526
Hpy188I	TCNGA	5 cut(s)	228, 238, 354, 460, 478
Hpy188III	TCNNGA	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	492, 541
HpyCH4III	ACNGT	3 cut(s)	97, 178, 445
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	8, 22, 62, 88, 113, 209, 248, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	128, 267, 351
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	74, 196, 465
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	2 cut(s)	422, 469
MaeI	CTAG	2 cut(s)	105, 560
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	178, 439, 544
MalI	GATC	3 cut(s)	76, 198, 467
MboI	GATC	3 cut(s)	74, 196, 465
MboII	GAAGA	2 cut(s)	66, 319
MflI	RGATCY	3 cut(s)	74, 196, 465
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	506
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	384, 483
MnlI	CCTC	4 cut(s)	142, 199, 435, 484
Mox20I	TGGCCA	1 cut(s)	506
MroNI	GCCGGC	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	260, 369
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	74, 196, 465
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	4 cut(s)	198, 264, 367, 423
NmuCI	GTSAC	2 cut(s)	439, 544
PctI	GAATGC	1 cut(s)	248
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	7, 211, 310
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	198, 264, 367, 423
PspPI	GGNCC	2 cut(s)	257, 365
PstI	CTGCAG	2 cut(s)	90, 211
PsuI	RGATCY	3 cut(s)	74, 196, 465
RsaI	GTAC	2 cut(s)	94, 375
RsaNI	GTAC	2 cut(s)	93, 374
SacI	GAGCTC	1 cut(s)	489
SatI	GCNGC	3 cut(s)	6, 210, 309
Sau3AI	GATC	3 cut(s)	74, 196, 465
Sau96I	GGNCC	2 cut(s)	257, 365
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	422, 469
SfcI	CTRYAG	2 cut(s)	86, 207
SsiI	CCGC	2 cut(s)	255, 308
SspMI	CTAG	2 cut(s)	105, 560
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	31, 417
TaaI	ACNGT	3 cut(s)	97, 178, 445
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	321, 553
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	439, 544
TseI	GCWGC	2 cut(s)	5, 209
Tsp45I	GTSAC	2 cut(s)	439, 544
TspDTI	ATGAA	1 cut(s)	373
XspI	CTAG	2 cut(s)	105, 560
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.