Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017614

Physical Location & Seq

Genomic Coordinates Forward (+)

9295785 .. 9298544

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATGATGAGCCAAGAGCAAGAGCAAGAGATCGATGAAGATCAGTTTCCAATTGGGATGCGTGTGCTTGTAGTAGATGATGATCGCACTGGCCTCCTCGACTTGGAAGCTGTGCTTCGTAACTGCCATTATCATGTGTTGTCTGCAAGTGGAGATACAAAGCTTGTGATGAAAGGAAAATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATGTGGCAACATGTGTTCAAGATCAGGAGTGATGTCGATTTAACGACAAATATTTCAGCTGCCACCGCTTGTTGTTGTGCCTTGCCAGTCCTCCTCTCAACCAAAAGAAGACGGAAGCAATGCAATGATCTAGACGATAACAAGGATCTTTCAAAACCGTCATCATCAACCCCGCAAAAGCAAAAGTCTCAGCTTGTTTGGTCTATGGAAATGAGTCAAAAATCTGATGAATGTGGAAGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGAACCATAGGCTTTATTTTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTTCTTCTTATCGGCCAATGGTTGCCGAAATTATAGTTGAAGATGATGCTGCACTCCGAAAGTGTCATGAGGTGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

216

Amino Acids

24.48

Weight (kDa)

6.59

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40870 FvH4_2g40870
rosa_laevigata	RLG00000011395
rosa_multiflora	Rmu_sc0002895.1_g000011
rosa_roxburghii	Rroxscaffold_7G00168430
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402500 Rh6BG411000 Rh6BG411100 Rh6CG416800 Rh6DG403900 Rh6DG404000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	558
AciI	CCGC	2 cut(s)	303, 410
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	184, 256, 390, 608
AluBI	AGCT	7 cut(s)	110, 163, 191, 229, 235, 296, 430
AluI	AGCT	7 cut(s)	110, 163, 191, 229, 235, 296, 430
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	91, 581
ApeKI	GCWGC	4 cut(s)	226, 296, 551, 617
AspLEI	GCGC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	238, 283, 563, 604
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	4 cut(s)	227, 297, 552, 618
BlsI	GCNGC	4 cut(s)	228, 298, 553, 619
BmsI	GCATC	3 cut(s)	48, 532, 604
BpiI	GAAGAC	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	33
BsaBI	GATNNNNATC	2 cut(s)	39, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	94, 323
Bse3DI	GCAATG	3 cut(s)	362, 367, 552
Bse8I	GATNNNNATC	2 cut(s)	39, 81
BseCI	ATCGAT	1 cut(s)	33
BseGI	GGATG	1 cut(s)	63
BseJI	GATNNNNATC	2 cut(s)	39, 81
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	3 cut(s)	362, 367, 552
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	2 cut(s)	94, 323
BseRI	GAGGAG	2 cut(s)	86, 320
BseXI	GCAGC	4 cut(s)	238, 283, 563, 604
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	93, 583
BshVI	ATCGAT	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	93, 583
Bsp143I	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
BspACI	CCGC	2 cut(s)	303, 410
BspANI	GGCC	2 cut(s)	93, 583
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	634
BspPI	GGATC	1 cut(s)	390
BsrDI	GCAATG	3 cut(s)	362, 367, 552
BsrI	ACTGG	2 cut(s)	94, 323
BssMI	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
Bst4CI	ACNGT	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	6 cut(s)	33, 43, 85, 261, 367, 385
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 241, 302, 551, 557
BstNSI	RCATGY	1 cut(s)	251
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	238, 283, 563, 604
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	93, 583
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	556
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	33
CviAII	CATG	4 cut(s)	134, 238, 248, 635
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	6 cut(s)	32, 42, 84, 260, 366, 384
DpnII	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	251
FaeI	CATG	4 cut(s)	137, 241, 251, 638
FaiI	YATR	9 cut(s)	135, 239, 249, 443, 516, 535, 537, 602, 636
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	4 cut(s)	133, 237, 247, 634
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	227, 297, 552, 618
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	227, 297, 552, 618
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	4 cut(s)	227, 297, 552, 618
HaeIII	GGCC	2 cut(s)	93, 583
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	137, 241, 251, 638
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	451
Hpy188I	TCNGA	3 cut(s)	218, 463, 626
Hpy188III	TCNNGA	5 cut(s)	256, 262, 368, 508, 635
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	146, 360, 503, 545, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 241, 302, 551, 557
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	137, 241, 251, 638
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
LmnI	GCTCC	2 cut(s)	188, 223
LpnPI	CCDG	5 cut(s)	75, 225, 247, 336, 521
Lsp1109I	GCAGC	4 cut(s)	238, 283, 563, 604
LweI	GCATC	3 cut(s)	48, 532, 604
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	6 cut(s)	32, 42, 84, 260, 366, 384
MboI	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
MboII	GAAGA	5 cut(s)	50, 357, 561, 564, 620
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	3 cut(s)	51, 179, 597
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	6 cut(s)	104, 107, 338, 341, 631, 639
MseI	TTAA	2 cut(s)	278, 528
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	229, 296
MunI	CAATTG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	232, 241, 302, 551, 557
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
NlaIII	CATG	4 cut(s)	137, 241, 251, 638
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	634
PciI	ACATGT	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	228, 298, 553, 619
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	2 cut(s)	229, 296
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	278, 528
SatI	GCNGC	4 cut(s)	227, 297, 552, 618
Sau3AI	GATC	6 cut(s)	30, 40, 82, 258, 364, 382
SchI	GAGTC	1 cut(s)	460
SfaNI	GCATC	3 cut(s)	48, 532, 604
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	51, 179, 597
SsiI	CCGC	2 cut(s)	303, 410
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	33, 99, 273
TasI	AATT	3 cut(s)	51, 179, 597
Tru1I	TTAA	2 cut(s)	278, 528
Tru9I	TTAA	2 cut(s)	278, 528
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	4 cut(s)	226, 296, 551, 617
TspDTI	ATGAA	3 cut(s)	51, 185, 480
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.