Rw7G018330
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
19665162 .. 19667920
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018330.1

Sequence Viewer

Length: 1029 bp
ATGACGCGGCGGTGCTCGCATTGCAGCCACAATGGCCACAACTCCCGCACGTGCCCCAACCGCGGCGTCAAGCTCTTCGGCGTCCGCCTCACCGACGGCGGCATCAGGAAGAGTGCCAGTATGGGCAATCTGACCCACTATGCCGGGTCCGGTCCGGTTCCGGCCTGCTCCATAACAACCCGGACTCTCCCGGCGAGGCTGCCGATCACTCCGGCGCCGCTGACGGTTATGCTTCTGAGGACTTCGTGCCCGGATCGTCTTCCAGCTGCCGGGAACGTAAAAAAGGTTCAAGCTTTGTTTTGGTTAATCTTTAAAGTGTGCACCCCATGGACAGAGGAGGAACATAGGATGTTTTTACTTGGACTACAGAAACTTGGTAAAGGTGATTGGCGTGGAATCGCTCGCAATTATGTTATTTCAAGAACACCTACTCAAGTGGCCAGCCATGCTCAGAAATATTTCATTAGGCAGTCTAATGTATCACGGAGAAAAAGACGTTCTAGCCTGTTTGATATAGTAGCAGATGATTCAGTTGATACTCCAATGGAACCACTGGACTTCTTACCTGAAAACCATGTAGAAGATGATACTGAAAGCAACCACCCATTGCCTGCTCCTCCAGCTTTGGATGAAGAATGTGAATCAATGGCATCTACCAACTCAGATGGAGAACCTTCCCCTCCAAAGGCTGATAACTCACAGTCATGTTATCCAGTGATGTATCCCACTTATTTCTCACCTTTTCCATTTCCTTTTCCAATGTGGCCTGGATACAGTACTGAGCCAACTAAGGTGGATACACACGAGGTCCTTAAGCCAACGGCAGTACATTCAAAGAGCCCAATTAATGTTGATGAGCTAGTAGGCATGTCGAATCTGAGTATAGTAGAGCCTAAAGGTCAAGCCGGTCCGTCCTCGCTCTCACTAAATCTTGTTGAAGGGTCCTCTAGGCAATCGGCTTTCCATGCAAATCCAAGTTCTGGCAGTTCAAATATGAAATCAGGTGGTAGTCCAATCCATGCGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

342

Amino Acids

37.38

Weight (kDa)

8.59

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 109 - 154 2.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 980
AccII CGCG 2 cut(s) 7, 63
AciI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 218
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 2 cut(s) 34, 438
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 3 cut(s) 66, 81, 215
AfaI GTAC 2 cut(s) 778, 828
AfiI CCNNNNNNNGG 4 cut(s) 62, 269, 685, 980
AflII CTTAAG 1 cut(s) 812
AgsI TTSAA 5 cut(s) 290, 420, 834, 938, 990
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 5 cut(s) 73, 266, 293, 623, 859
AluI AGCT 5 cut(s) 73, 266, 293, 623, 859
Alw21I GWGCWC 2 cut(s) 17, 323
Alw44I GTGCAC 1 cut(s) 319
AlwI GGATC 1 cut(s) 261
AoxI GGCC 4 cut(s) 34, 162, 438, 764
ApaLI GTGCAC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 24, 199, 266
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 217, 1024
AspS9I GGNCC 5 cut(s) 147, 152, 808, 908, 942
AsuC2I CCSGG 5 cut(s) 145, 181, 191, 251, 271
AsuHPI GGTGA 3 cut(s) 82, 395, 729
AvaII GGWCC 5 cut(s) 147, 152, 808, 908, 942
BaeGI GKGCMC 3 cut(s) 56, 251, 323
BalI TGGCCA 2 cut(s) 36, 440
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 842
BauI CACGAG 1 cut(s) 803
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 17, 323
BbvI GCAGC 3 cut(s) 36, 186, 253
BccI CCATC 1 cut(s) 659
BceAI ACGGC 2 cut(s) 112, 837
BciT130I CCWGG 1 cut(s) 768
BciVI GTATCC 3 cut(s) 732, 764, 790
BcnI CCSGG 5 cut(s) 145, 181, 191, 251, 271
BfaI CTAG 3 cut(s) 501, 860, 948
BfmI CTRYAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 812
BfuI GTATCC 3 cut(s) 732, 764, 790
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 7 cut(s) 8, 25, 64, 100, 200, 218, 267
BlsI GCNGC 7 cut(s) 9, 26, 65, 101, 201, 219, 268
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 6 cut(s) 145, 181, 191, 251, 271, 768
Bme18I GGWCC 5 cut(s) 147, 152, 808, 908, 942
BmgT120I GGNCC 5 cut(s) 147, 152, 808, 908, 942
BmiI GGNNCC 5 cut(s) 148, 159, 216, 549, 943
BmrFI CCNGG 6 cut(s) 145, 181, 191, 251, 271, 768
BmsI GCATC 2 cut(s) 111, 659
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 5 cut(s) 145, 181, 191, 251, 271
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 3 cut(s) 66, 81, 215
BsaJI CCNNGG 2 cut(s) 61, 326
BsaWI WCCGGW 2 cut(s) 149, 154
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 269, 685, 980
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 3 cut(s) 117, 558, 713
Bse3DI GCAATG 2 cut(s) 19, 605
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 61, 326
BseGI GGATG 2 cut(s) 354, 634
BseLI CCNNNNNNNGG 4 cut(s) 62, 269, 685, 980
BseMI GCAATG 2 cut(s) 19, 605
BseMII CTCAG 5 cut(s) 227, 464, 675, 771, 869
BseNI ACTGG 3 cut(s) 117, 558, 713
BseRI GAGGAG 2 cut(s) 350, 606
BseSI GKGCMC 3 cut(s) 56, 251, 323
BseXI GCAGC 3 cut(s) 36, 186, 253
Bsh1236I CGCG 2 cut(s) 7, 63
BshFI GGCC 4 cut(s) 36, 164, 440, 766
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 17, 323
BslI CCNNNNNNNGG 4 cut(s) 62, 269, 685, 980
BsnI GGCC 4 cut(s) 36, 164, 440, 766
Bsp1286I GDGCHC 5 cut(s) 17, 56, 251, 323, 842
Bsp143I GATC 2 cut(s) 204, 253
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 218
BspANI GGCC 4 cut(s) 36, 164, 440, 766
BspCNI CTCAG 5 cut(s) 228, 463, 674, 772, 870
BspFNI CGCG 2 cut(s) 7, 63
BspLI GGNNCC 5 cut(s) 148, 159, 216, 549, 943
BspPI GGATC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 812
BsrDI GCAATG 2 cut(s) 19, 605
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 3 cut(s) 117, 558, 713
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 2 cut(s) 61, 326
BssMI GATC 2 cut(s) 204, 253
BssNI GRCGYC 3 cut(s) 66, 81, 215
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 3 cut(s) 226, 702, 776
Bst6I CTCTTC 2 cut(s) 80, 104
BstACI GRCGYC 3 cut(s) 66, 81, 215
BstAFI CTTAAG 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 5 cut(s) 17, 166, 403, 442, 612
BstDEI CTNAG 6 cut(s) 236, 450, 661, 780, 789, 878
BstDSI CCRYGG 2 cut(s) 61, 326
BstF5I GGATG 2 cut(s) 354, 634
BstFNI CGCG 2 cut(s) 7, 63
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 2 cut(s) 217, 1024
BstKTI GATC 2 cut(s) 207, 256
BstMBI GATC 2 cut(s) 204, 253
BstMWI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 446, 620, 965
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 6 cut(s) 143, 179, 189, 249, 269, 766
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 3 cut(s) 56, 251, 323
BstUI CGCG 2 cut(s) 7, 63
BstV1I GCAGC 3 cut(s) 36, 186, 253
BstV2I GAAGAC 1 cut(s) 251
BsuI GTATCC 3 cut(s) 732, 764, 790
BsuRI GGCC 4 cut(s) 36, 164, 440, 766
BtgI CCRYGG 2 cut(s) 61, 326
BtsCI GGATG 2 cut(s) 354, 634
BtsIMutI CAGTG 2 cut(s) 551, 720
Cac8I GCNNGC 5 cut(s) 17, 166, 403, 442, 612
CfoI GCGC 2 cut(s) 217, 1024
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 5 cut(s) 147, 152, 808, 908, 942
Cfr42I CCGCGG 1 cut(s) 64
CpoI CGGWCCG 2 cut(s) 152, 908
CseI GACGC 3 cut(s) 13, 55, 70
Csp6I GTAC 2 cut(s) 777, 827
CspCI CAANNNNNGTGG 2 cut(s) 774, 809
CspI CGGWCCG 2 cut(s) 152, 908
CviAII CATG 7 cut(s) 327, 446, 575, 705, 868, 965, 1019
CviQI GTAC 2 cut(s) 777, 827
DdeI CTNAG 6 cut(s) 236, 450, 661, 780, 789, 878
DinI GGCGCC 1 cut(s) 216
DpnI GATC 2 cut(s) 206, 255
DpnII GATC 2 cut(s) 204, 253
DraI TTTAAA 1 cut(s) 313
EaeI YGGCCR 2 cut(s) 34, 438
Eam1104I CTCTTC 2 cut(s) 80, 104
EarI CTCTTC 2 cut(s) 80, 104
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 842
Eco47I GGWCC 5 cut(s) 147, 152, 808, 908, 942
Eco72I CACGTG 1 cut(s) 51
EcoO109I RGGNCCY 2 cut(s) 808, 942
EcoRII CCWGG 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 842
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 7 cut(s) 330, 449, 578, 708, 871, 968, 1022
FatI CATG 7 cut(s) 326, 445, 574, 704, 867, 964, 1018
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 7 cut(s) 8, 25, 64, 100, 200, 218, 267
FokI GGATG 2 cut(s) 361, 641
FriOI GRGCYC 1 cut(s) 842
Fsp4HI GCNGC 7 cut(s) 8, 25, 64, 100, 200, 218, 267
FspBI CTAG 3 cut(s) 501, 860, 948
GlaI GCGC 2 cut(s) 216, 1023
GluI GCNGC 7 cut(s) 8, 25, 64, 100, 200, 218, 267
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 4 cut(s) 36, 164, 440, 766
HgaI GACGC 3 cut(s) 13, 55, 70
HhaI GCGC 2 cut(s) 217, 1024
Hin1I GRCGYC 3 cut(s) 66, 81, 215
Hin1II CATG 7 cut(s) 330, 449, 578, 708, 871, 968, 1022
Hin6I GCGC 2 cut(s) 215, 1022
HinP1I GCGC 2 cut(s) 215, 1022
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 5 cut(s) 184, 396, 527, 641, 874
HphI GGTGA 3 cut(s) 82, 395, 729
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 5 cut(s) 132, 237, 453, 664, 879
Hpy188III TCNNGA 2 cut(s) 106, 420
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 684, 932
HpyCH4III ACNGT 3 cut(s) 226, 702, 776
HpyCH4IV ACGT 3 cut(s) 50, 276, 496
HpyCH4V TGCA 3 cut(s) 24, 321, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 446, 620, 965
HpyF3I CTNAG 6 cut(s) 236, 450, 661, 780, 789, 878
HpySE526I ACGT 3 cut(s) 50, 276, 496
Hsp92I GRCGYC 3 cut(s) 66, 81, 215
Hsp92II CATG 7 cut(s) 330, 449, 578, 708, 871, 968, 1022
HspAI GCGC 2 cut(s) 215, 1022
KasI GGCGCC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 204, 253
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 173, 619
Lsp1109I GCAGC 3 cut(s) 36, 186, 253
LweI GCATC 2 cut(s) 111, 659
MaeI CTAG 3 cut(s) 501, 860, 948
MaeII ACGT 3 cut(s) 50, 276, 496
MalI GATC 2 cut(s) 206, 255
MboI GATC 2 cut(s) 204, 253
MboII GAAGA 5 cut(s) 67, 121, 251, 593, 644
MhlI GDGCHC 5 cut(s) 17, 56, 251, 323, 842
MlsI TGGCCA 2 cut(s) 36, 440
MluCI AATT 2 cut(s) 406, 843
MluNI TGGCCA 2 cut(s) 36, 440
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 1 cut(s) 178
Mox20I TGGCCA 2 cut(s) 36, 440
MroXI GAANNNNTTC 1 cut(s) 458
MscI TGGCCA 2 cut(s) 36, 440
MseI TTAA 4 cut(s) 305, 312, 813, 846
MslI CAYNNNNRTG 1 cut(s) 703
Msp20I TGGCCA 2 cut(s) 36, 440
MspA1I CMGCKG 3 cut(s) 63, 220, 266
MspCI CTTAAG 1 cut(s) 812
MspR9I CCNGG 6 cut(s) 145, 181, 191, 251, 271, 768
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 2 cut(s) 7, 63
MwoI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 446, 620, 965
NarI GGCGCC 1 cut(s) 215
NciI CCSGG 5 cut(s) 145, 181, 191, 251, 271
NcoI CCATGG 1 cut(s) 326
NdeII GATC 2 cut(s) 204, 253
NlaIII CATG 7 cut(s) 330, 449, 578, 708, 871, 968, 1022
NlaIV GGNNCC 5 cut(s) 148, 159, 216, 549, 943
NspI RCATGY 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 4 cut(s) 396, 527, 641, 874
PflMI CCANNNNNTGG 1 cut(s) 980
PkrI GCNGC 7 cut(s) 9, 26, 65, 101, 201, 219, 268
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 218
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 2 cut(s) 808, 942
PshBI ATTAAT 1 cut(s) 846
Psp5II RGGWCCY 2 cut(s) 808, 942
Psp6I CCWGG 1 cut(s) 766
PspCI CACGTG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 5 cut(s) 148, 159, 216, 549, 943
PspPI GGNCC 5 cut(s) 147, 152, 808, 908, 942
PspPPI RGGWCCY 2 cut(s) 808, 942
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 778, 828
RsaNI GTAC 2 cut(s) 777, 827
RseI CAYNNNNRTG 1 cut(s) 703
Rsr2I CGGWCCG 2 cut(s) 152, 908
RsrII CGGWCCG 2 cut(s) 152, 908
SacII CCGCGG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 305, 312, 813, 846
SatI GCNGC 7 cut(s) 8, 25, 64, 100, 200, 218, 267
Sau3AI GATC 2 cut(s) 204, 253
Sau96I GGNCC 5 cut(s) 147, 152, 808, 908, 942
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 6 cut(s) 145, 181, 191, 251, 271, 768
SduI GDGCHC 5 cut(s) 17, 56, 251, 323, 842
SfaNI GCATC 2 cut(s) 111, 659
SfcI CTRYAG 1 cut(s) 365
SfoI GGCGCC 1 cut(s) 216
Sfr303I CCGCGG 1 cut(s) 64
SgrBI CCGCGG 1 cut(s) 64
SinI GGWCC 5 cut(s) 147, 152, 808, 908, 942
SmiMI CAYNNNNRTG 1 cut(s) 703
SmlI CTYRAG 2 cut(s) 432, 812
SmoI CTYRAG 2 cut(s) 432, 812
Sse9I AATT 2 cut(s) 406, 843
SsiI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 218
SspDI GGCGCC 1 cut(s) 214
SspI AATATT 1 cut(s) 458
SspMI CTAG 3 cut(s) 501, 860, 948
StyD4I CCNGG 6 cut(s) 143, 179, 189, 249, 269, 766
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 226, 702, 776
TaiI ACGT 3 cut(s) 53, 279, 499
TaqI TCGA 1 cut(s) 872
TasI AATT 2 cut(s) 406, 843
TatI WGTACW 2 cut(s) 776, 826
TauI GCSGC 4 cut(s) 10, 66, 102, 220
TfiI GAWTC 4 cut(s) 396, 527, 641, 874
Tru1I TTAA 4 cut(s) 305, 312, 813, 846
Tru9I TTAA 4 cut(s) 305, 312, 813, 846
TscAI CASTG 2 cut(s) 558, 720
TseI GCWGC 3 cut(s) 24, 199, 266
TspDTI ATGAA 3 cut(s) 451, 645, 1010
TspGWI ACGGA 2 cut(s) 499, 900
TspRI CASTG 2 cut(s) 558, 720
Van91I CCANNNNNTGG 1 cut(s) 980
Vha464I CTTAAG 1 cut(s) 812
VneI GTGCAC 1 cut(s) 319
VpaK11BI GGWCC 5 cut(s) 147, 152, 808, 908, 942
VspI ATTAAT 1 cut(s) 846
XceI RCATGY 1 cut(s) 871
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 3 cut(s) 501, 860, 948
ZrmI AGTACT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.