Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012831

Physical Location & Seq

Genomic Coordinates Reverse (-)

5884402 .. 5886690

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGACTCGGAGGTGCTCGCATTGCAGCCACAATGGCCACAACTCCCGGACGTGTCCGAACCGAGGGGTCAAGCTCTTCGGCGTTCGCTTGACCGACGGCTCCATCAGGAAGAGCGCTAGTATGGGCAATCTGACCCACTATGCGGGGTCGGGTTCGGGTCTCCTCCCTAACAATCCGGATTCTCCTGGCGACACCACCAACGACCATGCTGCTGCCGACGGCTACGCCTCTGAGGACTGCGTGCCCGGATCGTCTTCGAGCCGCGAACGCAAAAAAGGCACTCCATGGACTGAAGAGGAACATAGGATGTTTTTACTCGGACTGCAGAAGCTTGGTAAAGGTGATTGGCGTGGAATCGCTCGCAATTACGTCATATCAAGAACACCTACTCAAGTGGCTAGCCATGCTCAGAAATATTTTATTAGGCAGACTAATGTGTCAAGGAGGAAAAGACGTTCCAGCCTCTTTGATATTGTAGCAGATGATTCAGTTGAAACCCAAATGGAACCACTGGACTTCTTACATGGTAACTATCCAGAAGCTGAAACTCAAGGCAACAATCCATTGCCAGCTCCTCCGCCTTTGGATAAAGAATGCGAATCAATGGACTCCACCAACTCAGATGGAGAACAGGCCGCTCCAAATCCCGATAGCTCAGAGTCATATTACCCAATGGTATATCCTGCGTATTTCTCCCCTTTCCCAATTCCTTATCCCTTGTGGCCTGGATACACTACTGAGCCCACTATGATGGATAAACATGAGGTTCTGAAGCCAACGGCAATACATTCAAAAAGCCCGATAAATGTTGATGAGCTAGTAGGCATGTCAAAATTGAGTTTAGGGGAGCCTCTAGGTCATTCTGGTCCGTCCTCGCTTACGCTTAAAATGGTTGAAGGGTCGTCTAGGCAGTCTGCTTTCCATGCAAATCCGGGTTCCGGCAGTTCAAGCATCAGTTCAGGTGGCAGTCCTATCCATGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010252 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022622 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045927 GO:0045934 GO:0046677 GO:0046686 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051341 GO:0051354 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2000468 GO:2000469 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

329

Amino Acids

35.58

Weight (kDa)

6.5

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47390
fragaria_vesca	FvH4_5g19500
malus_domestica	MD00G1169600.v1.1 MD06G1054100.v1.1
prunus_persica	Prupe.5G064900_v2.0.a1
pyrus_communis	pycom04g05450 pycom06g04550
rosa_chinensis	RchiOBHm_Chr7g0204081
rosa_laevigata	RLG00000003489
rosa_roxburghii	Rroxscaffold_3G00253370
rosa_rugosa	Rorug07G0080500 Rorug07G0080600 Rorug07G0080700
rosa_samantha	Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200
rosa_wichuraiana	Rw7G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	638
AccII	CGCG	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	4 cut(s)	143, 262, 578, 636
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	312, 791
AfeI	AGCGCT	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	62, 142, 938
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	494, 792, 896, 948
AjiI	CACGTC	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	184, 724
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	6 cut(s)	73, 331, 542, 572, 654, 817
AluI	AGCT	6 cut(s)	73, 331, 542, 572, 654, 817
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	3 cut(s)	34, 633, 722
ApeKI	GCWGC	3 cut(s)	24, 209, 212
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	866
AsuC2I	CCSGG	3 cut(s)	46, 246, 933
AsuHPI	GGTGA	1 cut(s)	353
AsuNHI	GCTAGC	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	866
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	36, 196, 199
BccI	CCATC	3 cut(s)	110, 617, 745
BceAI	ACGGC	3 cut(s)	112, 235, 795
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	186, 726
BciVI	GTATCC	1 cut(s)	722
BcnI	CCSGG	3 cut(s)	46, 246, 933
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	5 cut(s)	117, 399, 818, 854, 906
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	5 cut(s)	25, 210, 213, 262, 636
BlsI	GCNGC	5 cut(s)	26, 211, 214, 263, 637
Bme1390I	CCNGG	5 cut(s)	46, 186, 246, 726, 933
Bme18I	GGWCC	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	4 cut(s)	100, 507, 849, 937
BmrFI	CCNGG	5 cut(s)	46, 186, 246, 726, 933
BmsI	GCATC	1 cut(s)	960
BmtI	GCTAGC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	375, 534
BpuMI	CCSGG	3 cut(s)	46, 246, 933
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	61, 284
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 142, 938
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	2 cut(s)	19, 563
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	186, 726
BseDI	CCNNGG	2 cut(s)	61, 284
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	62, 142, 938
BseMI	GCAATG	2 cut(s)	19, 563
BseMII	CTCAG	5 cut(s)	222, 422, 633, 669, 729
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	152, 564
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	36, 196, 199
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	36, 635, 724
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	46, 176, 246, 932, 939
BslI	CCNNNNNNNGG	3 cut(s)	62, 142, 938
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	36, 635, 724
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	17, 246, 744
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	4 cut(s)	143, 262, 578, 636
BspANI	GGCC	3 cut(s)	36, 635, 724
BspCNI	CTCAG	5 cut(s)	223, 421, 632, 668, 730
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	100, 507, 849, 937
BspMAI	CTGCAG	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	256
BspQI	GCTCTTC	2 cut(s)	80, 104
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	638
BsrDI	GCAATG	2 cut(s)	19, 563
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	61, 284
BssMI	GATC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	186, 726
Bst6I	CTCTTC	3 cut(s)	80, 104, 288
BstC8I	GCNNGC	5 cut(s)	17, 242, 361, 400, 570
BstDEI	CTNAG	5 cut(s)	231, 408, 619, 655, 738
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 33, 267, 276, 404, 923, 948
BstNI	CCWGG	2 cut(s)	186, 726
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	5 cut(s)	44, 184, 244, 724, 931
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	36, 196, 199
BstV2I	GAAGAC	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	3 cut(s)	36, 635, 724
BtgI	CCRYGG	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	5 cut(s)	17, 242, 361, 400, 570
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	866
CviAII	CATG	8 cut(s)	206, 285, 404, 524, 761, 826, 923, 977
DdeI	CTNAG	5 cut(s)	231, 408, 619, 655, 738
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	80, 104, 288
EarI	CTCTTC	3 cut(s)	80, 104, 288
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	866
Eco47III	AGCGCT	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	312, 791
EcoRII	CCWGG	2 cut(s)	184, 724
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	8 cut(s)	209, 288, 407, 527, 764, 829, 926, 980
FatI	CATG	8 cut(s)	205, 284, 403, 523, 760, 825, 922, 976
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	25, 210, 213, 262, 636
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	5 cut(s)	25, 210, 213, 262, 636
FspBI	CTAG	5 cut(s)	117, 399, 818, 854, 906
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	5 cut(s)	25, 210, 213, 262, 636
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	36, 635, 724
HapII	CCGG	5 cut(s)	46, 176, 246, 932, 939
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	8 cut(s)	209, 288, 407, 527, 764, 829, 926, 980
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	7 cut(s)	4, 179, 354, 485, 599, 608, 659
HpaII	CCGG	5 cut(s)	46, 176, 246, 932, 939
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	9 cut(s)	9, 57, 132, 232, 320, 411, 622, 658, 771
Hpy188III	TCNNGA	5 cut(s)	106, 176, 378, 536, 647
Hpy99I	CGWCG	2 cut(s)	98, 221
HpyAV	CCTTC	1 cut(s)	890
HpyCH4IV	ACGT	3 cut(s)	50, 369, 454
HpyCH4V	TGCA	4 cut(s)	24, 325, 926, 980
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 33, 267, 276, 404, 923, 948
HpyF3I	CTNAG	5 cut(s)	231, 408, 619, 655, 738
HpySE526I	ACGT	3 cut(s)	50, 369, 454
Hsp92II	CATG	8 cut(s)	209, 288, 407, 527, 764, 829, 926, 980
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	248
LguI	GCTCTTC	2 cut(s)	80, 104
LmnI	GCTCC	4 cut(s)	104, 577, 643, 847
Lsp1109I	GCAGC	3 cut(s)	36, 196, 199
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	5 cut(s)	117, 399, 818, 854, 906
MaeII	ACGT	3 cut(s)	50, 369, 454
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	1 cut(s)	250
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	1 cut(s)	248
MboII	GAAGA	4 cut(s)	67, 121, 246, 305
MhlI	GDGCHC	3 cut(s)	17, 246, 744
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	3 cut(s)	364, 705, 833
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	602, 668
Mox20I	TGGCCA	1 cut(s)	36
MroI	TCCGGA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	885
MslI	CAYNNNNRTG	1 cut(s)	749
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	5 cut(s)	46, 176, 246, 932, 939
MspR9I	CCNGG	5 cut(s)	46, 186, 246, 726, 933
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	186, 726
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	7 cut(s)	21, 33, 267, 276, 404, 923, 948
NciI	CCSGG	3 cut(s)	46, 246, 933
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	248
NheI	GCTAGC	1 cut(s)	398
NlaIII	CATG	8 cut(s)	209, 288, 407, 527, 764, 829, 926, 980
NlaIV	GGNNCC	4 cut(s)	100, 507, 849, 937
NspI	RCATGY	1 cut(s)	829
PciSI	GCTCTTC	2 cut(s)	80, 104
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	179, 354, 485, 599
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	26, 211, 214, 263, 637
PleI	GAGTC	2 cut(s)	602, 667
PpsI	GAGTC	2 cut(s)	602, 667
Psp6I	CCWGG	2 cut(s)	184, 724
PspGI	CCWGG	2 cut(s)	184, 724
PspN4I	GGNNCC	4 cut(s)	100, 507, 849, 937
PspPI	GGNCC	1 cut(s)	866
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	749
SapI	GCTCTTC	2 cut(s)	80, 104
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	5 cut(s)	25, 210, 213, 262, 636
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	866
SchI	GAGTC	2 cut(s)	602, 668
ScrFI	CCNGG	5 cut(s)	46, 186, 246, 726, 933
SduI	GDGCHC	3 cut(s)	17, 246, 744
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	390, 549
SmoI	CTYRAG	2 cut(s)	390, 549
Sse9I	AATT	3 cut(s)	364, 705, 833
SsiI	CCGC	4 cut(s)	143, 262, 578, 636
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	5 cut(s)	117, 399, 818, 854, 906
StyD4I	CCNGG	5 cut(s)	44, 184, 244, 724, 931
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	3 cut(s)	53, 372, 457
TaqI	TCGA	1 cut(s)	257
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	364, 705, 833
TauI	GCSGC	2 cut(s)	264, 638
TfiI	GAWTC	4 cut(s)	179, 354, 485, 599
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	3 cut(s)	24, 209, 212
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	866
XceI	RCATGY	1 cut(s)	829
XspI	CTAG	5 cut(s)	117, 399, 818, 854, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.