FvH4_5g19500
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
11334179 .. 11338079
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19500.t1

Sequence Viewer

Length: 990 bp
ATGACGCGGCGGTGCTCGCATTGCAGCCACAATGGCCACAACTCCCGCACGTGCCCCAACCGCGGCGTCAAGCTCTTCGGCGTGCGACTCACCGACGGCGGCATCAGGAAGAGTGCTAGCATGGGAAATCTGACCCACTATGCCGGGTCGGGTTCGGGTCTGCTCCATAACAACCCGGACTCTCCAGGCGAGGCTGCTGATCACTCTGCTGCAGCTGACGGTTATGCTTCCGAGGACTTCGTGCCCGGATCGTCTTCTAGCTGCCGGGAACGTAAAAAAGGCACCCCATGGACAGAGGAGGAGCATAGGATGTTTTTGCTTGGACTACAGAAACTTGGTAAAGGCGATTGGCGTGGAATCGCTCGCAATTATGTTATTTCGAGAACGCCTACACAAGTGGCTAGCCATGCTCAGAAATATTTCATTAGGCAATCTAATGTATCAAGGAGAAAAAGACGATCTAGCCTGTTTGATATCGTAGCAGATGATTCAGTTGACACTCCAATGGAACAACTGGATTTATTACCTGAAAACCATCTAGAAGATGAAACTGAAAACAACCACCCATTGCCTGCTCCTCCAGCTTTGGATGAAGAATGCGAATCAATGGCATCTACGAACTCAGATGGAGAACCTTCCCCTCCAAAGCCTGATAACTCACAGTCATGTTATCCAGTGATGTATCCTGCTTATTTCTCACCTTTTCCGTTTCCTTTTCCAATGTGGCCTGGATACAGTACTGAGCCACCTAAGGTGGATACACATGAGATACTTAAGCCAACAGCGGTACATTCAAAGAGCCCTATTAATGTGGATGAGCTAGTAGGCATGTCGAATCTGAGTTTAGGAGAGCCTAAAGGTCAAGCCGGTCCCTCCTCGCTTTCACTAAATCTTGTTGAAGGTTCCTCTAGGCAATCGGCTTTCCATGCAAATCCAAGTTCTGGCAGTTCGAATATGAAATCAGGTGGTAGTCCAATTCATGCGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

330

Amino Acids

35.68

Weight (kDa)

6.27

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 141 2.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 2 cut(s) 7, 63
AciI CCGC 7 cut(s) 7, 10, 46, 61, 63, 99, 785
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 34
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 739, 789
AfiI CCNNNNNNNGG 2 cut(s) 62, 941
AflII CTTAAG 1 cut(s) 773
AgsI TTSAA 2 cut(s) 795, 899
AjnI CCWGG 2 cut(s) 184, 727
AluBI AGCT 5 cut(s) 73, 215, 261, 584, 820
AluI AGCT 5 cut(s) 73, 215, 261, 584, 820
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 256
AoxI GGCC 2 cut(s) 34, 725
ApeKI GCWGC 5 cut(s) 24, 194, 209, 212, 261
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 985
AspS9I GGNCC 1 cut(s) 869
AsuC2I CCSGG 4 cut(s) 145, 176, 246, 266
AsuHPI GGTGA 2 cut(s) 82, 690
AsuII TTCGAA 1 cut(s) 950
AsuNHI GCTAGC 2 cut(s) 116, 401
AvaII GGWCC 1 cut(s) 869
AxyI CCTNAGG 1 cut(s) 750
BaeGI GKGCMC 2 cut(s) 56, 246
BalI TGGCCA 1 cut(s) 36
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 803
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 36, 181, 196, 224, 248
BccI CCATC 2 cut(s) 543, 620
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 186, 729
BciVI GTATCC 3 cut(s) 693, 725, 751
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 4 cut(s) 145, 176, 246, 266
BfaI CTAG 7 cut(s) 117, 258, 402, 462, 539, 821, 909
BfmI CTRYAG 2 cut(s) 210, 326
BfrI CTTAAG 1 cut(s) 773
BfuI GTATCC 3 cut(s) 693, 725, 751
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 8 cut(s) 8, 25, 64, 100, 195, 210, 213, 262
BlsI GCNGC 8 cut(s) 9, 26, 65, 101, 196, 211, 214, 263
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
Bme18I GGWCC 1 cut(s) 869
BmgT120I GGNCC 1 cut(s) 869
BmiI GGNNCC 3 cut(s) 283, 871, 904
BmrFI CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
BmsI GCATC 2 cut(s) 111, 620
BmtI GCTAGC 2 cut(s) 120, 405
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 2 cut(s) 168, 564
Bpu14I TTCGAA 1 cut(s) 950
BpuMI CCSGG 4 cut(s) 145, 176, 246, 266
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 61, 231, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 941
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 519, 674
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 2 cut(s) 19, 566
BseBI CCWGG 2 cut(s) 186, 729
BseDI CCNNGG 3 cut(s) 61, 231, 287
BseGI GGATG 3 cut(s) 315, 595, 820
BseLI CCNNNNNNNGG 2 cut(s) 62, 941
BseMI GCAATG 2 cut(s) 19, 566
BseMII CTCAG 4 cut(s) 425, 636, 732, 830
BseNI ACTGG 2 cut(s) 519, 674
BseRI GAGGAG 4 cut(s) 311, 314, 567, 865
BseSI GKGCMC 2 cut(s) 56, 246
BseXI GCAGC 5 cut(s) 36, 181, 196, 224, 248
Bsh1236I CGCG 2 cut(s) 7, 63
BshFI GGCC 2 cut(s) 36, 727
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 5 cut(s) 144, 176, 246, 265, 867
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 2 cut(s) 62, 941
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 2 cut(s) 36, 727
Bsp119I TTCGAA 1 cut(s) 950
Bsp1286I GDGCHC 4 cut(s) 17, 56, 246, 803
Bsp143I GATC 3 cut(s) 199, 248, 458
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 7 cut(s) 7, 10, 46, 61, 63, 99, 785
BspANI GGCC 2 cut(s) 36, 727
BspCNI CTCAG 4 cut(s) 424, 635, 733, 831
BspFNI CGCG 2 cut(s) 7, 63
BspLI GGNNCC 3 cut(s) 283, 871, 904
BspMAI CTGCAG 1 cut(s) 214
BspOI GCTAGC 2 cut(s) 120, 405
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 773
BsrDI GCAATG 2 cut(s) 19, 566
BsrFI RCCGGY 1 cut(s) 866
BsrI ACTGG 2 cut(s) 519, 674
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 3 cut(s) 61, 231, 287
BssMI GATC 3 cut(s) 199, 248, 458
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 186, 729
Bst4CI ACNGT 3 cut(s) 221, 663, 737
Bst6I CTCTTC 2 cut(s) 80, 104
BstACI GRCGYC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 6 cut(s) 17, 83, 118, 364, 403, 573
BstDEI CTNAG 5 cut(s) 411, 622, 741, 750, 839
BstDSI CCRYGG 2 cut(s) 61, 287
BstF5I GGATG 3 cut(s) 315, 595, 820
BstFNI CGCG 2 cut(s) 7, 63
BstHHI GCGC 1 cut(s) 985
BstKTI GATC 3 cut(s) 202, 251, 461
BstMBI GATC 3 cut(s) 199, 248, 458
BstMWI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
BstNI CCWGG 2 cut(s) 186, 729
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 6 cut(s) 143, 174, 184, 244, 264, 727
BstSFI CTRYAG 2 cut(s) 210, 326
BstSLI GKGCMC 2 cut(s) 56, 246
BstUI CGCG 2 cut(s) 7, 63
BstV1I GCAGC 5 cut(s) 36, 181, 196, 224, 248
BstV2I GAAGAC 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 750
BsuI GTATCC 3 cut(s) 693, 725, 751
BsuRI GGCC 2 cut(s) 36, 727
BtgI CCRYGG 2 cut(s) 61, 287
BtsCI GGATG 3 cut(s) 315, 595, 820
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 6 cut(s) 17, 83, 118, 364, 403, 573
CfoI GCGC 1 cut(s) 985
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 869
Cfr42I CCGCGG 1 cut(s) 64
CseI GACGC 2 cut(s) 13, 55
Csp6I GTAC 2 cut(s) 738, 788
CviAII CATG 8 cut(s) 121, 288, 407, 666, 764, 829, 926, 980
CviQI GTAC 2 cut(s) 738, 788
DdeI CTNAG 5 cut(s) 411, 622, 741, 750, 839
DpnI GATC 3 cut(s) 201, 250, 460
DpnII GATC 3 cut(s) 199, 248, 458
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 80, 104
EarI CTCTTC 2 cut(s) 80, 104
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 803
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 869
Eco72I CACGTG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 750
EcoRII CCWGG 2 cut(s) 184, 727
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 8 cut(s) 124, 291, 410, 669, 767, 832, 929, 983
FaqI GGGAC 1 cut(s) 855
FatI CATG 8 cut(s) 120, 287, 406, 665, 763, 828, 925, 979
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 8 cut(s) 8, 25, 64, 100, 195, 210, 213, 262
FokI GGATG 3 cut(s) 322, 602, 827
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 8 cut(s) 8, 25, 64, 100, 195, 210, 213, 262
FspBI CTAG 7 cut(s) 117, 258, 402, 462, 539, 821, 909
GlaI GCGC 1 cut(s) 984
GluI GCNGC 8 cut(s) 8, 25, 64, 100, 195, 210, 213, 262
GsuI CTGGAG 2 cut(s) 168, 564
HaeIII GGCC 2 cut(s) 36, 727
HapII CCGG 5 cut(s) 144, 176, 246, 265, 867
HgaI GACGC 2 cut(s) 13, 55
HhaI GCGC 1 cut(s) 985
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 8 cut(s) 124, 291, 410, 669, 767, 832, 929, 983
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 6 cut(s) 87, 179, 357, 488, 602, 835
HpaII CCGG 5 cut(s) 144, 176, 246, 265, 867
HphI GGTGA 2 cut(s) 82, 690
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 5 cut(s) 132, 232, 414, 625, 840
Hpy188III TCNNGA 3 cut(s) 106, 381, 539
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 645, 893
HpyCH4III ACNGT 3 cut(s) 221, 663, 737
HpyCH4IV ACGT 2 cut(s) 50, 271
HpyCH4V TGCA 3 cut(s) 24, 212, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
HpyF3I CTNAG 5 cut(s) 411, 622, 741, 750, 839
HpySE526I ACGT 2 cut(s) 50, 271
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 8 cut(s) 124, 291, 410, 669, 767, 832, 929, 983
HspAI GCGC 1 cut(s) 983
Ksp22I TGATCA 1 cut(s) 199
KspI CCGCGG 1 cut(s) 64
Kzo9I GATC 3 cut(s) 199, 248, 458
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 3 cut(s) 168, 301, 580
Lsp1109I GCAGC 5 cut(s) 36, 181, 196, 224, 248
LweI GCATC 2 cut(s) 111, 620
MaeI CTAG 7 cut(s) 117, 258, 402, 462, 539, 821, 909
MaeII ACGT 2 cut(s) 50, 271
MalI GATC 3 cut(s) 201, 250, 460
MboI GATC 3 cut(s) 199, 248, 458
MboII GAAGA 5 cut(s) 67, 121, 246, 554, 605
MhlI GDGCHC 4 cut(s) 17, 56, 246, 803
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 2 cut(s) 367, 975
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 2 cut(s) 81, 173
MnlI CCTC 9 cut(s) 184, 226, 289, 292, 588, 651, 883, 886, 916
Mox20I TGGCCA 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 419
MscI TGGCCA 1 cut(s) 36
MseI TTAA 2 cut(s) 774, 807
MslI CAYNNNNRTG 2 cut(s) 503, 664
Msp20I TGGCCA 1 cut(s) 36
MspA1I CMGCKG 3 cut(s) 63, 215, 785
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 5 cut(s) 144, 176, 246, 265, 867
MspR9I CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 2 cut(s) 186, 729
MvnI CGCG 2 cut(s) 7, 63
MwoI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
NciI CCSGG 4 cut(s) 145, 176, 246, 266
NcoI CCATGG 1 cut(s) 287
NdeII GATC 3 cut(s) 199, 248, 458
NheI GCTAGC 2 cut(s) 116, 401
NlaIII CATG 8 cut(s) 124, 291, 410, 669, 767, 832, 929, 983
NlaIV GGNNCC 3 cut(s) 283, 871, 904
NspI RCATGY 1 cut(s) 832
NspV TTCGAA 1 cut(s) 950
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 4 cut(s) 357, 488, 602, 835
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 8 cut(s) 9, 26, 65, 101, 196, 211, 214, 263
PleI GAGTC 2 cut(s) 81, 173
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 2 cut(s) 81, 173
Ppu21I YACGTR 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 184, 727
PspCI CACGTG 1 cut(s) 51
PspGI CCWGG 2 cut(s) 184, 727
PspN4I GGNNCC 3 cut(s) 283, 871, 904
PspPI GGNCC 1 cut(s) 869
PstI CTGCAG 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 739, 789
RsaNI GTAC 2 cut(s) 738, 788
RseI CAYNNNNRTG 2 cut(s) 503, 664
SacII CCGCGG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 774, 807
SatI GCNGC 8 cut(s) 8, 25, 64, 100, 195, 210, 213, 262
Sau3AI GATC 3 cut(s) 199, 248, 458
Sau96I GGNCC 1 cut(s) 869
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 2 cut(s) 81, 173
ScrFI CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
SduI GDGCHC 4 cut(s) 17, 56, 246, 803
SfaNI GCATC 2 cut(s) 111, 620
SfcI CTRYAG 2 cut(s) 210, 326
Sfr303I CCGCGG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 950
SgrBI CCGCGG 1 cut(s) 64
SinI GGWCC 1 cut(s) 869
SmiMI CAYNNNNRTG 2 cut(s) 503, 664
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 2 cut(s) 367, 975
SsiI CCGC 7 cut(s) 7, 10, 46, 61, 63, 99, 785
SspI AATATT 1 cut(s) 419
SspMI CTAG 7 cut(s) 117, 258, 402, 462, 539, 821, 909
StyD4I CCNGG 6 cut(s) 143, 174, 184, 244, 264, 727
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 221, 663, 737
TaiI ACGT 2 cut(s) 53, 274
TaqI TCGA 3 cut(s) 380, 833, 950
TasI AATT 2 cut(s) 367, 975
TatI WGTACW 1 cut(s) 737
TauI GCSGC 3 cut(s) 10, 66, 102
TfiI GAWTC 4 cut(s) 357, 488, 602, 835
Tru1I TTAA 2 cut(s) 774, 807
Tru9I TTAA 2 cut(s) 774, 807
TscAI CASTG 1 cut(s) 681
TseI GCWGC 5 cut(s) 24, 194, 209, 212, 261
TspDTI ATGAA 5 cut(s) 412, 561, 606, 968, 971
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 1 cut(s) 681
Van91I CCANNNNNTGG 1 cut(s) 941
Vha464I CTTAAG 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 869
VspI ATTAAT 1 cut(s) 807
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 832
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 7 cut(s) 117, 258, 402, 462, 539, 821, 909
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.