AT5G47390
MYB Family

myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012831
Physical Location & Seq
Forward (+)
19226769 .. 19228895
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47390.1

Sequence Viewer

Length: 1098 bp
ATGACTCGTCGATGTTCTCACTGCAATCACAATGGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACCGAAGGTTCGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGATCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGATGTCCCTGACCATGTCGCTGGTGATGGTTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAGAGAAAGAAAGGAACTCCATGGACAGAGGAAGAACACAGGATGTTCTTATTAGGTTTACAGAAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCTACACAAGTTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGCAAAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGATATTCCCATGGATTTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCTATTCATCAGACACTTGCTCCTAGCTCACTTCACGCACCGTCAATCTTGGAAATCGAAGAATGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGCCGCTGCTGCTTCTTCTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCGCAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTCACCATATTACCCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAAACTCATGAAATTCTCAGACCAACTGCTGTGCACTCGAAAGCTCCTATCAATGTTGACGAGCTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAGTCTCTTTCATTGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAATCCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010252 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022622 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045927 GO:0045934 GO:0046677 GO:0046686 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051341 GO:0051354 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2000468 GO:2000469 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

365

Amino Acids

39.67

Weight (kDa)

6.11

Isoelectric Point (pI)

70.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 97 - 142 4.8e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47390
fragaria_vesca FvH4_5g19500
malus_domestica MD00G1169600.v1.1 MD06G1054100.v1.1
prunus_persica Prupe.5G064900_v2.0.a1
pyrus_communis pycom04g05450 pycom06g04550
rosa_chinensis RchiOBHm_Chr7g0204081
rosa_laevigata RLG00000003489
rosa_roxburghii Rroxscaffold_3G00253370
rosa_rugosa Rorug07G0080500 Rorug07G0080600 Rorug07G0080700
rosa_samantha Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200
rosa_wichuraiana Rw7G018330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1096
AasI GACNNNNNNGTC 1 cut(s) 465
AccII CGCG 2 cut(s) 63, 270
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 7 cut(s) 63, 268, 678, 687, 749, 755, 1014
AclWI GGATC 2 cut(s) 97, 160
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 879
AfiI CCNNNNNNNGG 2 cut(s) 62, 142
AgsI TTSAA 2 cut(s) 1003, 1026
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 8 cut(s) 73, 337, 597, 911, 931, 949, 1006, 1056
AluI AGCT 8 cut(s) 73, 337, 597, 911, 931, 949, 1006, 1056
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 3 cut(s) 448, 473, 996
Alw44I GTGCAC 1 cut(s) 899
AlwI GGATC 2 cut(s) 97, 160
AlwNI CAGNNNCTG 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 2 cut(s) 34, 830
ApaLI GTGCAC 1 cut(s) 899
ApeKI GCWGC 3 cut(s) 689, 692, 751
ApoI RAATTY 1 cut(s) 879
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 4 cut(s) 172, 186, 195, 667
AsuHPI GGTGA 6 cut(s) 82, 209, 233, 359, 792, 1034
AsuNHI GCTAGC 1 cut(s) 404
AvaII GGWCC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 903
BalI TGGCCA 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 676, 679, 763
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 765
BcnI CCSGG 4 cut(s) 172, 186, 195, 667
BcoDI GTCTC 3 cut(s) 448, 473, 996
BfaI CTAG 8 cut(s) 264, 384, 405, 465, 594, 713, 1007, 1053
BisI GCNGC 7 cut(s) 64, 268, 687, 690, 693, 752, 755
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 7 cut(s) 65, 269, 688, 691, 694, 753, 756
Bme1390I CCNGG 5 cut(s) 172, 186, 195, 667, 765
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 4 cut(s) 169, 175, 483, 672
BmrFI CCNGG 5 cut(s) 172, 186, 195, 667, 765
BmtI GCTAGC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 4 cut(s) 172, 186, 195, 667
BsaJI CCNNGG 3 cut(s) 290, 507, 666
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 142
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 3 cut(s) 290, 507, 666
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 62, 142
BseMII CTCAG 4 cut(s) 228, 428, 898, 964
BseSI GKGCMC 1 cut(s) 903
BseXI GCAGC 3 cut(s) 676, 679, 763
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 2 cut(s) 63, 270
BshFI GGCC 2 cut(s) 36, 832
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 5 cut(s) 106, 171, 185, 194, 666
BslFI GGGAC 2 cut(s) 39, 188
BslI CCNNNNNNNGG 2 cut(s) 62, 142
BsmAI GTCTC 3 cut(s) 448, 473, 996
BsmFI GGGAC 2 cut(s) 39, 188
BsnI GGCC 2 cut(s) 36, 832
Bsp1286I GDGCHC 1 cut(s) 903
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 102, 152, 985
Bsp1720I GCTNAGC 1 cut(s) 950
Bsp19I CCATGG 2 cut(s) 290, 507
BspACI CCGC 7 cut(s) 63, 268, 678, 687, 749, 755, 1014
BspANI GGCC 2 cut(s) 36, 832
BspCNI CTCAG 4 cut(s) 229, 427, 897, 963
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 2 cut(s) 63, 270
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 4 cut(s) 169, 175, 483, 672
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 2 cut(s) 97, 160
BspQI GCTCTTC 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 290, 507, 666
BssMI GATC 3 cut(s) 102, 152, 985
BssT1I CCWWGG 2 cut(s) 290, 507
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 3 cut(s) 253, 406, 834
BstDEI CTNAG 6 cut(s) 131, 237, 414, 884, 945, 950
BstDSI CCRYGG 2 cut(s) 290, 507
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 63, 270
BstKTI GATC 3 cut(s) 105, 155, 988
BstMAI GTCTC 3 cut(s) 448, 473, 996
BstMBI GATC 3 cut(s) 102, 152, 985
BstMWI GCNNNNNNNGC 4 cut(s) 410, 686, 692, 751
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 5 cut(s) 170, 184, 193, 665, 763
BstSLI GKGCMC 1 cut(s) 903
BstUI CGCG 2 cut(s) 63, 270
BstV1I GCAGC 3 cut(s) 676, 679, 763
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 36, 832
BtgI CCRYGG 2 cut(s) 290, 507
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 253, 406, 834
CaiI CAGNNNCTG 1 cut(s) 337
CciI TCATGA 1 cut(s) 874
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 7 cut(s) 164, 212, 291, 410, 508, 875, 974
DdeI CTNAG 6 cut(s) 131, 237, 414, 884, 945, 950
DpnI GATC 3 cut(s) 104, 154, 987
DpnII GATC 3 cut(s) 102, 152, 985
DrdI GACNNNNNNGTC 1 cut(s) 465
DseDI GACNNNNNNGTC 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco130I CCWWGG 2 cut(s) 290, 507
Eco47I GGWCC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 290, 507
ErhI CCWWGG 2 cut(s) 290, 507
FaeI CATG 7 cut(s) 167, 215, 294, 413, 511, 878, 977
FaqI GGGAC 2 cut(s) 39, 188
FatI CATG 7 cut(s) 163, 211, 290, 409, 507, 874, 973
FauI CCCGC 1 cut(s) 1007
Fnu4HI GCNGC 7 cut(s) 64, 268, 687, 690, 693, 752, 755
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 7 cut(s) 64, 268, 687, 690, 693, 752, 755
FspBI CTAG 8 cut(s) 264, 384, 405, 465, 594, 713, 1007, 1053
GluI GCNGC 7 cut(s) 64, 268, 687, 690, 693, 752, 755
GsaI CCCAGC 1 cut(s) 341
HaeIII GGCC 2 cut(s) 36, 832
HapII CCGG 5 cut(s) 106, 171, 185, 194, 666
Hin1II CATG 7 cut(s) 167, 215, 294, 413, 511, 878, 977
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HinfI GANTC 7 cut(s) 4, 569, 638, 647, 962, 980, 1048
HpaII CCGG 5 cut(s) 106, 171, 185, 194, 666
HphI GGTGA 6 cut(s) 82, 209, 233, 359, 792, 1034
Hpy166II GTNNAC 3 cut(s) 329, 901, 925
Hpy188III TCNNGA 8 cut(s) 106, 150, 366, 485, 708, 848, 875, 1026
Hpy8I GTNNAC 3 cut(s) 329, 901, 925
Hpy99I CGWCG 2 cut(s) 12, 453
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 8 cut(s) 24, 116, 517, 559, 733, 745, 901, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 686, 692, 751
HpyF3I CTNAG 6 cut(s) 131, 237, 414, 884, 945, 950
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 7 cut(s) 167, 215, 294, 413, 511, 878, 977
Kpn2I TCCGGA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 102, 152, 985
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 595, 916
Lsp1109I GCAGC 3 cut(s) 676, 679, 763
MaeI CTAG 8 cut(s) 264, 384, 405, 465, 594, 713, 1007, 1053
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 227, 376
MalI GATC 3 cut(s) 104, 154, 987
MboI GATC 3 cut(s) 102, 152, 985
MboII GAAGA 9 cut(s) 249, 314, 542, 641, 690, 693, 696, 728, 1014
MhlI GDGCHC 1 cut(s) 903
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 1 cut(s) 879
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 3 cut(s) 563, 641, 971
MmeI TCCRAC 4 cut(s) 201, 475, 812, 990
MnlI CCTC 7 cut(s) 232, 271, 292, 350, 484, 520, 859
Mox20I TGGCCA 1 cut(s) 36
MroI TCCGGA 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 422
MscI TGGCCA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 5 cut(s) 106, 171, 185, 194, 666
MspR9I CCNGG 5 cut(s) 172, 186, 195, 667, 765
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 2 cut(s) 63, 270
MwoI GCNNNNNNNGC 4 cut(s) 410, 686, 692, 751
NciI CCSGG 4 cut(s) 172, 186, 195, 667
NcoI CCATGG 2 cut(s) 290, 507
NdeII GATC 3 cut(s) 102, 152, 985
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 7 cut(s) 167, 215, 294, 413, 511, 878, 977
NlaIV GGNNCC 4 cut(s) 169, 175, 483, 672
NmuCI GTSAC 1 cut(s) 376
PagI TCATGA 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 638, 980, 1048
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 65, 269, 688, 691, 694, 753, 756
PleI GAGTC 3 cut(s) 563, 641, 970
PpsI GAGTC 3 cut(s) 563, 641, 970
PsiI TTATAA 1 cut(s) 1096
Psp6I CCWGG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 4 cut(s) 169, 175, 483, 672
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 262
SatI GCNGC 7 cut(s) 64, 268, 687, 690, 693, 752, 755
Sau3AI GATC 3 cut(s) 102, 152, 985
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 3 cut(s) 563, 641, 971
ScrFI CCNGG 5 cut(s) 172, 186, 195, 667, 765
SduI GDGCHC 1 cut(s) 903
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 1 cut(s) 879
SsiI CCGC 7 cut(s) 63, 268, 678, 687, 749, 755, 1014
SspI AATATT 1 cut(s) 538
SspMI CTAG 8 cut(s) 264, 384, 405, 465, 594, 713, 1007, 1053
StyD4I CCNGG 5 cut(s) 170, 184, 193, 665, 763
StyI CCWWGG 2 cut(s) 290, 507
TaaI ACNGT 1 cut(s) 612
TaiI ACGT 1 cut(s) 463
TaqI TCGA 4 cut(s) 10, 101, 627, 905
TasI AATT 1 cut(s) 879
TauI GCSGC 4 cut(s) 66, 270, 689, 757
TfiI GAWTC 3 cut(s) 638, 980, 1048
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 3 cut(s) 689, 692, 751
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 415, 566, 891, 987
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 212
VneI GTGCAC 1 cut(s) 899
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 8 cut(s) 264, 384, 405, 465, 594, 713, 1007, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.