Prupe.5G064900_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012831
Physical Location & Seq
Forward (+)
7908850 .. 7911533
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G064900.1

Sequence Viewer

Length: 990 bp
ATGACTCGGAGGTGCTCGCATTGCAGCCACAATGGCCACAACTCTCGGACGTGCCCCAACCGAGGGGTCAAGCTCTTCGGCGTTCGCTTGACCGATGGCTCCATCAGGAAGAGCGCTAGTATGGGCAATCTCTCCCACTATGCCGGGTCGAGTTCGGGTCCCCACCCGAACAATCCGGGTTCTCCCGGCGACACCACCAACGATCACGCCGGCGCTGCCGACGGGTATGCCTCTGAGGACTTCGTGCCCGGATCGTCTTCGAGCCGTGAACGGAAAAAAGGCACTCCATGGACTGAAGATGAACATAGGATGTTTTTACTCGGACTGCAGAAGCTTGGCAAAGGTGACTGGCGTGGGATTGCTCGCAATTACGTCATATCAAGAACACCTACTCAAGTAGCTAGCCATGCTCAGAAATATTTCATTAGGCAGACTAATGTGTCGAGGAGAAAACGGCGTTCCAGCCTGTTTGATATTGTAGCAGATGATTCAGTTGAGGCTCCAATGGAACCACTAGACTTCTTACCTGGCAACCATCTACAAGCTGAAAGTCAAAGCAACAACCCATTGCCCGCTCCTCCAGCTTTGGATGAAGAATGTGAATCAATGGATTCTACCAACTCAGATGGAGAACCTCTCCCTCCACAGCCTGATAGCTCACAGTCATTTTACCCAATGATATATCCTGCATATTTCTCACCTTTCCCAGTTCCTTTTCCATTGTGGCCTGGATACAGTACTGAGCCCACTAAGCAGGATAAACACGAGGTTCTCAAGCCAACAGCAGTACATTCAAAGAGCCCGATTAATGTTGATGAGCTAGTAGGAATGTCAAAACTGAGCTTAGGAGAGCCTATAGGTCATTCCGGCCCCTCCTCGCTTACGCTAAAGCTGGTTGAAGGGTCTTCTAGGCAGTCGGCTTTTCATGCAAATCCAGGCTCTGGAAGTTCTGGCATGAATTCAGGTGGTAGTCCCATCCATGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010252 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022622 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045927 GO:0045934 GO:0046677 GO:0046686 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051341 GO:0051354 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2000468 GO:2000469 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

330

Amino Acids

35.49

Weight (kDa)

6.92

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47390
fragaria_vesca FvH4_5g19500
malus_domestica MD00G1169600.v1.1 MD06G1054100.v1.1
prunus_persica Prupe.5G064900_v2.0.a1
pyrus_communis pycom04g05450 pycom06g04550
rosa_chinensis RchiOBHm_Chr7g0204081
rosa_laevigata RLG00000003489
rosa_roxburghii Rroxscaffold_3G00253370
rosa_rugosa Rorug07G0080500 Rorug07G0080600 Rorug07G0080700
rosa_samantha Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200
rosa_wichuraiana Rw7G018330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 941
AccBSI CCGCTC 1 cut(s) 575
AciI CCGC 1 cut(s) 573
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 739, 789
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 3 cut(s) 62, 63, 941
AgsI TTSAA 2 cut(s) 795, 899
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 3 cut(s) 526, 727, 934
AluBI AGCT 9 cut(s) 73, 334, 401, 545, 584, 657, 820, 843, 892
AluI AGCT 9 cut(s) 73, 334, 401, 545, 584, 657, 820, 843, 892
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 941
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 3 cut(s) 34, 725, 868
ApeKI GCWGC 2 cut(s) 24, 215
ApoI RAATTY 1 cut(s) 958
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 2 cut(s) 116, 215
AspS9I GGNCC 2 cut(s) 158, 869
AsuC2I CCSGG 4 cut(s) 145, 177, 186, 249
AsuHPI GGTGA 2 cut(s) 356, 690
AsuNHI GCTAGC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 2 cut(s) 56, 249
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 2 cut(s) 747, 803
BauI CACGAG 1 cut(s) 764
BbsI GAAGAC 2 cut(s) 249, 897
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 36, 202
BccI CCATC 5 cut(s) 89, 110, 543, 620, 983
BceAI ACGGC 2 cut(s) 249, 470
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 3 cut(s) 528, 729, 936
BciVI GTATCC 1 cut(s) 725
BcnI CCSGG 4 cut(s) 145, 177, 186, 249
BfaI CTAG 5 cut(s) 117, 402, 515, 821, 909
BfmI CTRYAG 2 cut(s) 326, 855
BfoI RGCGCY 2 cut(s) 117, 216
BfuI GTATCC 1 cut(s) 725
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 25, 216
BlsI GCNGC 2 cut(s) 26, 217
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 7 cut(s) 145, 177, 186, 249, 528, 729, 936
Bme18I GGWCC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 158, 869
BmiI GGNNCC 6 cut(s) 100, 159, 160, 501, 510, 871
BmrFI CCNGG 7 cut(s) 145, 177, 186, 249, 528, 729, 936
BmrI ACTGGG 1 cut(s) 701
BmtI GCTAGC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 701
BpiI GAAGAC 2 cut(s) 249, 897
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 378, 758
BpuMI CCSGG 4 cut(s) 145, 177, 186, 249
BsaJI CCNNGG 2 cut(s) 61, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 63, 941
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 353, 707
Bse3DI GCAATG 2 cut(s) 19, 566
BseBI CCWGG 3 cut(s) 528, 729, 936
BseDI CCNNGG 2 cut(s) 61, 287
BseGI GGATG 3 cut(s) 315, 595, 975
BseLI CCNNNNNNNGG 3 cut(s) 62, 63, 941
BseMI GCAATG 2 cut(s) 19, 566
BseMII CTCAG 5 cut(s) 225, 425, 636, 732, 830
BseNI ACTGG 2 cut(s) 353, 707
BseRI GAGGAG 3 cut(s) 460, 567, 865
BseSI GKGCMC 2 cut(s) 56, 249
BseXI GCAGC 2 cut(s) 36, 202
BshFI GGCC 3 cut(s) 36, 727, 870
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 6 cut(s) 144, 176, 186, 210, 249, 867
BslFI GGGAC 2 cut(s) 144, 957
BslI CCNNNNNNNGG 3 cut(s) 62, 63, 941
BsmFI GGGAC 2 cut(s) 144, 957
BsnI GGCC 3 cut(s) 36, 727, 870
Bsp1286I GDGCHC 5 cut(s) 17, 56, 249, 747, 803
Bsp143I GATC 2 cut(s) 202, 251
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 1 cut(s) 573
BspANI GGCC 3 cut(s) 36, 727, 870
BspCNI CTCAG 5 cut(s) 226, 424, 635, 733, 831
BspLI GGNNCC 6 cut(s) 100, 159, 160, 501, 510, 871
BspMAI CTGCAG 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 259
BspQI GCTCTTC 2 cut(s) 80, 104
BsrBI CCGCTC 1 cut(s) 575
BsrDI GCAATG 2 cut(s) 19, 566
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 2 cut(s) 353, 707
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 61, 287
BssMI GATC 2 cut(s) 202, 251
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 3 cut(s) 528, 729, 936
Bst4CI ACNGT 2 cut(s) 663, 737
Bst6I CTCTTC 2 cut(s) 80, 104
BstC8I GCNNGC 5 cut(s) 17, 211, 364, 403, 573
BstDEI CTNAG 7 cut(s) 234, 411, 622, 741, 750, 839, 844
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 315, 595, 975
BstH2I RGCGCY 2 cut(s) 117, 216
BstHHI GCGC 2 cut(s) 116, 215
BstKTI GATC 2 cut(s) 205, 254
BstMBI GATC 2 cut(s) 202, 251
BstMWI GCNNNNNNNGC 7 cut(s) 21, 33, 215, 407, 581, 751, 926
BstNI CCWGG 3 cut(s) 528, 729, 936
BstSCI CCNGG 7 cut(s) 143, 175, 184, 247, 526, 727, 934
BstSFI CTRYAG 2 cut(s) 326, 855
BstSLI GKGCMC 2 cut(s) 56, 249
BstV1I GCAGC 2 cut(s) 36, 202
BstV2I GAAGAC 2 cut(s) 249, 897
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 36, 727, 870
BtgI CCRYGG 1 cut(s) 287
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 3 cut(s) 315, 595, 975
Cac8I GCNNGC 5 cut(s) 17, 211, 364, 403, 573
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 2 cut(s) 116, 215
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 158, 869
Csp6I GTAC 2 cut(s) 738, 788
CviAII CATG 5 cut(s) 288, 407, 926, 955, 980
CviQI GTAC 2 cut(s) 738, 788
DdeI CTNAG 7 cut(s) 234, 411, 622, 741, 750, 839, 844
DpnI GATC 2 cut(s) 204, 253
DpnII GATC 2 cut(s) 202, 251
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 80, 104
EarI CTCTTC 2 cut(s) 80, 104
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 747, 803
Eco47I GGWCC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 3 cut(s) 526, 727, 934
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 2 cut(s) 747, 803
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 5 cut(s) 291, 410, 929, 958, 983
FaqI GGGAC 2 cut(s) 144, 957
FatI CATG 5 cut(s) 287, 406, 925, 954, 979
FauI CCCGC 1 cut(s) 580
Fnu4HI GCNGC 2 cut(s) 25, 216
FokI GGATG 3 cut(s) 322, 602, 962
FriOI GRGCYC 2 cut(s) 747, 803
Fsp4HI GCNGC 2 cut(s) 25, 216
FspBI CTAG 5 cut(s) 117, 402, 515, 821, 909
GlaI GCGC 2 cut(s) 115, 214
GluI GCNGC 2 cut(s) 25, 216
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 2 cut(s) 117, 216
HaeIII GGCC 3 cut(s) 36, 727, 870
HapII CCGG 6 cut(s) 144, 176, 186, 210, 249, 867
HhaI GCGC 2 cut(s) 116, 215
Hin1II CATG 5 cut(s) 291, 410, 929, 958, 983
Hin6I GCGC 2 cut(s) 114, 213
HinP1I GCGC 2 cut(s) 114, 213
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 4 cut(s) 4, 488, 602, 611
HpaII CCGG 6 cut(s) 144, 176, 186, 210, 249, 867
HphI GGTGA 2 cut(s) 356, 690
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 6 cut(s) 9, 48, 235, 323, 414, 625
Hpy188III TCNNGA 3 cut(s) 106, 381, 942
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 893
HpyCH4III ACNGT 2 cut(s) 663, 737
HpyCH4IV ACGT 2 cut(s) 50, 372
HpyCH4V TGCA 4 cut(s) 24, 328, 689, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 33, 215, 407, 581, 751, 926
HpyF3I CTNAG 7 cut(s) 234, 411, 622, 741, 750, 839, 844
HpySE526I ACGT 2 cut(s) 50, 372
Hsp92II CATG 5 cut(s) 291, 410, 929, 958, 983
HspAI GCGC 2 cut(s) 114, 213
KflI GGGWCCC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 202, 251
LguI GCTCTTC 2 cut(s) 80, 104
LmnI GCTCC 3 cut(s) 104, 505, 580
Lsp1109I GCAGC 2 cut(s) 36, 202
MaeI CTAG 5 cut(s) 117, 402, 515, 821, 909
MaeII ACGT 2 cut(s) 50, 372
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 204, 253
MbiI CCGCTC 1 cut(s) 575
MboI GATC 2 cut(s) 202, 251
MboII GAAGA 6 cut(s) 67, 121, 249, 308, 605, 897
MhlI GDGCHC 5 cut(s) 17, 56, 249, 747, 803
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 2 cut(s) 367, 958
MluNI TGGCCA 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 36
MreI CGCCGGCG 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 419
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 807
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 6 cut(s) 144, 176, 186, 210, 249, 867
MspR9I CCNGG 7 cut(s) 145, 177, 186, 249, 528, 729, 936
MvaI CCWGG 3 cut(s) 528, 729, 936
MwoI GCNNNNNNNGC 7 cut(s) 21, 33, 215, 407, 581, 751, 926
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 4 cut(s) 145, 177, 186, 249
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 202, 251
NgoMIV GCCGGC 1 cut(s) 209
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 5 cut(s) 291, 410, 929, 958, 983
NlaIV GGNNCC 6 cut(s) 100, 159, 160, 501, 510, 871
NmuCI GTSAC 1 cut(s) 344
PciSI GCTCTTC 2 cut(s) 80, 104
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 3 cut(s) 488, 602, 611
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 2 cut(s) 26, 217
PpuMI RGGWCCY 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 526, 727, 934
PspGI CCWGG 3 cut(s) 526, 727, 934
PspN4I GGNNCC 6 cut(s) 100, 159, 160, 501, 510, 871
PspPI GGNCC 2 cut(s) 158, 869
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 941
RsaI GTAC 2 cut(s) 739, 789
RsaNI GTAC 2 cut(s) 738, 788
SapI GCTCTTC 2 cut(s) 80, 104
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 2 cut(s) 25, 216
Sau3AI GATC 2 cut(s) 202, 251
Sau96I GGNCC 2 cut(s) 158, 869
ScaI AGTACT 1 cut(s) 739
ScrFI CCNGG 7 cut(s) 145, 177, 186, 249, 528, 729, 936
SduI GDGCHC 5 cut(s) 17, 56, 249, 747, 803
SfcI CTRYAG 2 cut(s) 326, 855
SgrAI CRCCGGYG 1 cut(s) 209
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 393, 773
SmoI CTYRAG 2 cut(s) 393, 773
Sse9I AATT 2 cut(s) 367, 958
SsiI CCGC 1 cut(s) 573
SspI AATATT 1 cut(s) 419
SspMI CTAG 5 cut(s) 117, 402, 515, 821, 909
StyD4I CCNGG 7 cut(s) 143, 175, 184, 247, 526, 727, 934
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 663, 737
TaiI ACGT 2 cut(s) 53, 375
TaqI TCGA 3 cut(s) 149, 260, 443
TaqII GACCGA 1 cut(s) 107
TasI AATT 2 cut(s) 367, 958
TatI WGTACW 2 cut(s) 737, 787
TfiI GAWTC 3 cut(s) 488, 602, 611
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 24, 215
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 5 cut(s) 315, 412, 606, 914, 971
TspGWI ACGGA 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 1 cut(s) 958
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 5 cut(s) 117, 402, 515, 821, 909
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.