MD06G1054100.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012831
Physical Location & Seq
Reverse (-)
7936953 .. 7939725
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1054100.v1.1.491

Sequence Viewer

Length: 987 bp
ATGACTCGGAGGTGCTCGCATTGCAGCCACAATGGCCACAACTCCCGGACGTGTCCGAACCGAGGGGTCAAGCTCTTCGGCGTTCGCTTGACCGACGGCTCCATCAGGAAGAGCGCTAGTATGGGCAATCTGACCCACTATGCCGGGTCCGGTTCGGGTCTCCTCCCCAACAATCCGGATTCTCCTGGCGACACCACCAACGACCATGCTGCTGCCGACGGCTACGCCTCGGAGGACTGCGTGCCCGGATCGTCTTCGAGCCGCGAACGCAAAAAAGGCACTCCATGGACTGAAGAGGAACATAGGATGTTTTTACTCGGACTGCAGAAGCTTGGTAAAGGTGATTGGCGTGGAATCGCTCGCAATTATGTCATATCAAGAACACCTACTCAAGTGGCTAGCCATGCTCAGAAATATTTTATTAGGCAGACTAATGTGTCAAGGAGGAAAAGACGTTCCAGCCTCTTTGATATTGTAGCAGATGATTCGGTTGAAACCCAAATGGAACCACTGGACTTCTTACATGGTAACTATCCAGAAGCTGAAACTCAAAGCAACAATCCATTGCCTGCTCCTCCGCCTTTGGATAAAGAAGGCGAATCAATGGATTCCACCAACTCAGATGGAGAACAGGCCACTCCAAATCCCGATAGCTCAGAGTCATATTACCCAATGGTATATCCTGCGTATTTCTCCCCTTTCCCAATTCCTTATCCCTTGTGGCCTGGATACACTACTGAGCCCACCATGACGGATAAACATGAGGTTCTGAAGCCAACGGCAATACATTCAAAGAGCCCGATAAATGTTGATGAGCTAGTAGGCATGTCAAAACTGAGTTTAGGGGAGCCTCTAGGTCATTCTGGTCCGTCCTCGCTTACGCTAAAAATGGTTGAAGGGTCGTCTAGGCAGTCTGCTTTCCATGCAAATCCGGGTTCCGGCAGTTCAAGCATCAATTCAGGTGGCAGTCCTATCCATGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010252 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022622 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045927 GO:0045934 GO:0046677 GO:0046686 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051341 GO:0051354 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2000468 GO:2000469 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

329

Amino Acids

35.59

Weight (kDa)

6.5

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 95 - 140 2.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47390
fragaria_vesca FvH4_5g19500
malus_domestica MD00G1169600.v1.1 MD06G1054100.v1.1
prunus_persica Prupe.5G064900_v2.0.a1
pyrus_communis pycom04g05450 pycom06g04550
rosa_chinensis RchiOBHm_Chr7g0204081
rosa_laevigata RLG00000003489
rosa_roxburghii Rroxscaffold_3G00253370
rosa_rugosa Rorug07G0080500 Rorug07G0080600 Rorug07G0080700
rosa_samantha Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200
rosa_wichuraiana Rw7G018330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 436
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 2 cut(s) 262, 578
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 312, 791
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 62, 938
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 4 cut(s) 494, 792, 896, 948
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 184, 724
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 5 cut(s) 73, 331, 542, 654, 817
AluI AGCT 5 cut(s) 73, 331, 542, 654, 817
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 3 cut(s) 34, 633, 722
ApeKI GCWGC 3 cut(s) 24, 209, 212
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 147, 866
AsuC2I CCSGG 4 cut(s) 46, 145, 246, 933
AsuHPI GGTGA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 2 cut(s) 147, 866
BaeGI GKGCMC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 2 cut(s) 744, 800
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 36, 196, 199
BccI CCATC 2 cut(s) 110, 617
BceAI ACGGC 3 cut(s) 112, 235, 795
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 468, 502
BciT130I CCWGG 2 cut(s) 186, 726
BciVI GTATCC 1 cut(s) 722
BcnI CCSGG 4 cut(s) 46, 145, 246, 933
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 5 cut(s) 117, 399, 818, 854, 906
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 117
BfuI GTATCC 1 cut(s) 722
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 4 cut(s) 25, 210, 213, 262
BlsI GCNGC 4 cut(s) 26, 211, 214, 263
Bme1390I CCNGG 6 cut(s) 46, 145, 186, 246, 726, 933
Bme18I GGWCC 2 cut(s) 147, 866
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 147, 866
BmiI GGNNCC 5 cut(s) 100, 148, 507, 849, 937
BmrFI CCNGG 6 cut(s) 46, 145, 186, 246, 726, 933
BmsI GCATC 1 cut(s) 960
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 375
BpuMI CCSGG 4 cut(s) 46, 145, 246, 933
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 61, 228, 284
BsaWI WCCGGW 2 cut(s) 149, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 938
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 2 cut(s) 19, 563
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 2 cut(s) 186, 726
BseDI CCNNGG 3 cut(s) 61, 228, 284
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 62, 938
BseMI GCAATG 2 cut(s) 19, 563
BseMII CTCAG 5 cut(s) 422, 633, 669, 729, 827
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 152, 564
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 3 cut(s) 36, 196, 199
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 36, 635, 724
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 7 cut(s) 46, 144, 150, 176, 246, 932, 939
BslI CCNNNNNNNGG 2 cut(s) 62, 938
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 3 cut(s) 36, 635, 724
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 4 cut(s) 17, 246, 744, 800
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 2 cut(s) 262, 578
BspANI GGCC 3 cut(s) 36, 635, 724
BspCNI CTCAG 5 cut(s) 421, 632, 668, 730, 828
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 5 cut(s) 100, 148, 507, 849, 937
BspMAI CTGCAG 1 cut(s) 327
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 2 cut(s) 80, 104
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 19, 563
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 61, 228, 284
BssMI GATC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 2 cut(s) 186, 726
Bst6I CTCTTC 3 cut(s) 80, 104, 288
BstC8I GCNNGC 5 cut(s) 17, 242, 361, 400, 570
BstDEI CTNAG 5 cut(s) 408, 619, 655, 738, 836
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 7 cut(s) 21, 33, 267, 276, 404, 923, 948
BstNI CCWGG 2 cut(s) 186, 726
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 6 cut(s) 44, 143, 184, 244, 724, 931
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 36, 196, 199
BstV2I GAAGAC 1 cut(s) 246
BsuI GTATCC 1 cut(s) 722
BsuRI GGCC 3 cut(s) 36, 635, 724
BtgI CCRYGG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 509
Cac8I GCNNGC 5 cut(s) 17, 242, 361, 400, 570
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 147, 866
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
CviAII CATG 9 cut(s) 206, 285, 404, 524, 748, 761, 826, 923, 977
DdeI CTNAG 5 cut(s) 408, 619, 655, 738, 836
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 80, 104, 288
EarI CTCTTC 3 cut(s) 80, 104, 288
EciI GGCGGA 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 2 cut(s) 744, 800
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 147, 866
Eco47III AGCGCT 1 cut(s) 115
Eco57I CTGAAG 2 cut(s) 312, 791
EcoRII CCWGG 2 cut(s) 184, 724
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 2 cut(s) 744, 800
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 9 cut(s) 209, 288, 407, 527, 751, 764, 829, 926, 980
FatI CATG 9 cut(s) 205, 284, 403, 523, 747, 760, 825, 922, 976
Fnu4HI GCNGC 4 cut(s) 25, 210, 213, 262
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 2 cut(s) 744, 800
Fsp4HI GCNGC 4 cut(s) 25, 210, 213, 262
FspBI CTAG 5 cut(s) 117, 399, 818, 854, 906
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 25, 210, 213, 262
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 3 cut(s) 36, 635, 724
HapII CCGG 7 cut(s) 46, 144, 150, 176, 246, 932, 939
HhaI GCGC 1 cut(s) 116
Hin1II CATG 9 cut(s) 209, 288, 407, 527, 751, 764, 829, 926, 980
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 7 cut(s) 4, 179, 354, 485, 599, 608, 659
HpaII CCGG 7 cut(s) 46, 144, 150, 176, 246, 932, 939
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 9 cut(s) 9, 57, 132, 232, 320, 411, 622, 658, 771
Hpy188III TCNNGA 5 cut(s) 106, 176, 378, 536, 647
Hpy99I CGWCG 2 cut(s) 98, 221
HpyAV CCTTC 2 cut(s) 587, 890
HpyCH4IV ACGT 2 cut(s) 50, 454
HpyCH4V TGCA 4 cut(s) 24, 325, 926, 980
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 33, 267, 276, 404, 923, 948
HpyF3I CTNAG 5 cut(s) 408, 619, 655, 738, 836
HpySE526I ACGT 2 cut(s) 50, 454
Hsp92II CATG 9 cut(s) 209, 288, 407, 527, 751, 764, 829, 926, 980
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 248
LguI GCTCTTC 2 cut(s) 80, 104
LmnI GCTCC 3 cut(s) 104, 577, 847
Lsp1109I GCAGC 3 cut(s) 36, 196, 199
LweI GCATC 1 cut(s) 960
MaeI CTAG 5 cut(s) 117, 399, 818, 854, 906
MaeII ACGT 2 cut(s) 50, 454
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 4 cut(s) 67, 121, 246, 305
MhlI GDGCHC 4 cut(s) 17, 246, 744, 800
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 3 cut(s) 364, 705, 955
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 668
Mox20I TGGCCA 1 cut(s) 36
MroI TCCGGA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 7 cut(s) 46, 144, 150, 176, 246, 932, 939
MspR9I CCNGG 6 cut(s) 46, 145, 186, 246, 726, 933
MvaI CCWGG 2 cut(s) 186, 726
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 7 cut(s) 21, 33, 267, 276, 404, 923, 948
NciI CCSGG 4 cut(s) 46, 145, 246, 933
NcoI CCATGG 1 cut(s) 284
NdeII GATC 1 cut(s) 248
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 9 cut(s) 209, 288, 407, 527, 751, 764, 829, 926, 980
NlaIV GGNNCC 5 cut(s) 100, 148, 507, 849, 937
NspI RCATGY 1 cut(s) 829
PciSI GCTCTTC 2 cut(s) 80, 104
PfeI GAWTC 5 cut(s) 179, 354, 485, 599, 608
PfoI TCCNGGA 1 cut(s) 44
PkrI GCNGC 4 cut(s) 26, 211, 214, 263
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 184, 724
PspGI CCWGG 2 cut(s) 184, 724
PspN4I GGNNCC 5 cut(s) 100, 148, 507, 849, 937
PspPI GGNCC 2 cut(s) 147, 866
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 542
SapI GCTCTTC 2 cut(s) 80, 104
SatI GCNGC 4 cut(s) 25, 210, 213, 262
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 2 cut(s) 147, 866
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 6 cut(s) 46, 145, 186, 246, 726, 933
SduI GDGCHC 4 cut(s) 17, 246, 744, 800
SfaNI GCATC 1 cut(s) 960
SfcI CTRYAG 1 cut(s) 323
SinI GGWCC 2 cut(s) 147, 866
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 3 cut(s) 364, 705, 955
SsiI CCGC 2 cut(s) 262, 578
SspI AATATT 1 cut(s) 416
SspMI CTAG 5 cut(s) 117, 399, 818, 854, 906
StyD4I CCNGG 6 cut(s) 44, 143, 184, 244, 724, 931
StyI CCWWGG 1 cut(s) 284
TaiI ACGT 2 cut(s) 53, 457
TaqI TCGA 1 cut(s) 257
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 364, 705, 955
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 5 cut(s) 179, 354, 485, 599, 608
TscAI CASTG 1 cut(s) 516
TseI GCWGC 3 cut(s) 24, 209, 212
TspGWI ACGGA 2 cut(s) 767, 858
TspRI CASTG 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 147, 866
XceI RCATGY 1 cut(s) 829
XspI CTAG 5 cut(s) 117, 399, 818, 854, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.