transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47390 |
| fragaria_vesca | FvH4_5g19500 |
| malus_domestica | MD00G1169600.v1.1 MD06G1054100.v1.1 |
| prunus_persica | Prupe.5G064900_v2.0.a1 |
| pyrus_communis | pycom04g05450 pycom06g04550 |
| rosa_chinensis | RchiOBHm_Chr7g0204081 |
| rosa_laevigata | RLG00000003489 |
| rosa_roxburghii | Rroxscaffold_3G00253370 |
| rosa_rugosa | Rorug07G0080500 Rorug07G0080600 Rorug07G0080700 |
| rosa_samantha | Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200 |
| rosa_wichuraiana | Rw7G018330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 47, 185 |
| AcsI | RAATTY | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 577 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 482, 483, 567 |
| AflII | CTTAAG | 1 cut(s) | 542 |
| AgsI | TTSAA | 3 cut(s) | 105, 146, 295 |
| AluBI | AGCT | 4 cut(s) | 101, 197, 409, 489 |
| AluI | AGCT | 4 cut(s) | 101, 197, 409, 489 |
| Alw26I | GTCTC | 2 cut(s) | 180, 242 |
| AlwI | GGATC | 2 cut(s) | 47, 185 |
| Ama87I | CYCGRG | 2 cut(s) | 177, 459 |
| ApoI | RAATTY | 1 cut(s) | 84 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuC2I | CCSGG | 1 cut(s) | 279 |
| AvaI | CYCGRG | 2 cut(s) | 177, 459 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BbsI | GAAGAC | 1 cut(s) | 283 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 505, 539 |
| BcnI | CCSGG | 1 cut(s) | 279 |
| BcoDI | GTCTC | 2 cut(s) | 180, 242 |
| BfrI | CTTAAG | 1 cut(s) | 542 |
| Bme1390I | CCNGG | 1 cut(s) | 279 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmeT110I | CYCGRG | 2 cut(s) | 177, 459 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 2 cut(s) | 158, 415 |
| BmrFI | CCNGG | 1 cut(s) | 279 |
| BmsI | GCATC | 2 cut(s) | 294, 580 |
| BpiI | GAAGAC | 1 cut(s) | 283 |
| BpuMI | CCSGG | 1 cut(s) | 279 |
| BsaBI | GATNNNNATC | 1 cut(s) | 516 |
| BsaI | GGTCTC | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 2 cut(s) | 460, 477 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 482, 483, 567 |
| Bse118I | RCCGGY | 1 cut(s) | 286 |
| Bse8I | GATNNNNATC | 1 cut(s) | 516 |
| BseDI | CCNNGG | 2 cut(s) | 460, 477 |
| BseGI | GGATG | 1 cut(s) | 213 |
| BseJI | GATNNNNATC | 1 cut(s) | 516 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 482, 483, 567 |
| BseRI | GAGGAG | 2 cut(s) | 111, 197 |
| BseYI | CCCAGC | 1 cut(s) | 482 |
| BsiHKCI | CYCGRG | 2 cut(s) | 177, 459 |
| BsiSI | CCGG | 2 cut(s) | 278, 287 |
| BslFI | GGGAC | 1 cut(s) | 447 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 482, 483, 567 |
| BsmAI | GTCTC | 2 cut(s) | 180, 242 |
| BsmFI | GGGAC | 1 cut(s) | 447 |
| Bso31I | GGTCTC | 1 cut(s) | 242 |
| BsoBI | CYCGRG | 2 cut(s) | 177, 459 |
| Bsp143I | GATC | 3 cut(s) | 52, 190, 583 |
| BspLI | GGNNCC | 2 cut(s) | 158, 415 |
| BspPI | GGATC | 2 cut(s) | 47, 185 |
| BspTI | CTTAAG | 1 cut(s) | 542 |
| BspTNI | GGTCTC | 1 cut(s) | 242 |
| BsrFI | RCCGGY | 1 cut(s) | 286 |
| BssAI | RCCGGY | 1 cut(s) | 286 |
| BssECI | CCNNGG | 2 cut(s) | 460, 477 |
| BssMI | GATC | 3 cut(s) | 52, 190, 583 |
| Bst4CI | ACNGT | 1 cut(s) | 357 |
| BstAFI | CTTAAG | 1 cut(s) | 542 |
| BstDEI | CTNAG | 1 cut(s) | 309 |
| BstF5I | GGATG | 1 cut(s) | 213 |
| BstKTI | GATC | 3 cut(s) | 55, 193, 586 |
| BstMAI | GTCTC | 2 cut(s) | 180, 242 |
| BstMBI | GATC | 3 cut(s) | 52, 190, 583 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 495 |
| BstSCI | CCNGG | 1 cut(s) | 277 |
| BstV2I | GAAGAC | 1 cut(s) | 283 |
| BtgZI | GCGATG | 1 cut(s) | 479 |
| BtsCI | GGATG | 1 cut(s) | 213 |
| Cfr10I | RCCGGY | 1 cut(s) | 286 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| CseI | GACGC | 1 cut(s) | 444 |
| Csp6I | GTAC | 1 cut(s) | 576 |
| CviAII | CATG | 1 cut(s) | 153 |
| CviJI | RGCY | 6 cut(s) | 101, 122, 197, 409, 482, 489 |
| CviKI_1 | RGCY | 6 cut(s) | 101, 122, 197, 409, 482, 489 |
| CviQI | GTAC | 1 cut(s) | 576 |
| DdeI | CTNAG | 1 cut(s) | 309 |
| DpnI | GATC | 3 cut(s) | 54, 192, 585 |
| DpnII | GATC | 3 cut(s) | 52, 190, 583 |
| Eco31I | GGTCTC | 1 cut(s) | 242 |
| Eco32I | GATATC | 1 cut(s) | 453 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| Eco88I | CYCGRG | 2 cut(s) | 177, 459 |
| EcoRV | GATATC | 1 cut(s) | 453 |
| FaeI | CATG | 1 cut(s) | 156 |
| FaqI | GGGAC | 1 cut(s) | 447 |
| FatI | CATG | 1 cut(s) | 152 |
| FokI | GGATG | 1 cut(s) | 220 |
| GsaI | CCCAGC | 1 cut(s) | 486 |
| HapII | CCGG | 2 cut(s) | 278, 287 |
| HgaI | GACGC | 1 cut(s) | 444 |
| Hin1II | CATG | 1 cut(s) | 156 |
| HincII | GTYRAC | 1 cut(s) | 360 |
| HindII | GTYRAC | 1 cut(s) | 360 |
| HinfI | GANTC | 2 cut(s) | 185, 517 |
| HpaI | GTTAAC | 1 cut(s) | 360 |
| HpaII | CCGG | 2 cut(s) | 278, 287 |
| Hpy166II | GTNNAC | 2 cut(s) | 353, 360 |
| Hpy188I | TCNGA | 6 cut(s) | 22, 190, 268, 303, 472, 531 |
| Hpy188III | TCNNGA | 3 cut(s) | 177, 179, 448 |
| Hpy8I | GTNNAC | 2 cut(s) | 353, 360 |
| HpyAV | CCTTC | 2 cut(s) | 131, 255 |
| HpyCH4III | ACNGT | 1 cut(s) | 357 |
| HpyCH4V | TGCA | 2 cut(s) | 250, 556 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 495 |
| HpyF3I | CTNAG | 1 cut(s) | 309 |
| Hsp92II | CATG | 1 cut(s) | 156 |
| KspAI | GTTAAC | 1 cut(s) | 360 |
| Kzo9I | GATC | 3 cut(s) | 52, 190, 583 |
| LmnI | GCTCC | 4 cut(s) | 98, 304, 406, 486 |
| LpnPI | CCDG | 6 cut(s) | 48, 74, 207, 291, 300, 468 |
| LweI | GCATC | 2 cut(s) | 294, 580 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MalI | GATC | 3 cut(s) | 54, 192, 585 |
| MboI | GATC | 3 cut(s) | 52, 190, 583 |
| MboII | GAAGA | 4 cut(s) | 75, 84, 270, 283 |
| MluCI | AATT | 1 cut(s) | 84 |
| MlyI | GAGTC | 1 cut(s) | 194 |
| MmeI | TCCRAC | 1 cut(s) | 355 |
| MnlI | CCTC | 7 cut(s) | 89, 175, 262, 266, 455, 487, 540 |
| MseI | TTAA | 5 cut(s) | 12, 45, 359, 387, 543 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MspCI | CTTAAG | 1 cut(s) | 542 |
| MspI | CCGG | 2 cut(s) | 278, 287 |
| MspR9I | CCNGG | 1 cut(s) | 279 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 495 |
| NciI | CCSGG | 1 cut(s) | 279 |
| NdeII | GATC | 3 cut(s) | 52, 190, 583 |
| NlaIII | CATG | 1 cut(s) | 156 |
| NlaIV | GGNNCC | 2 cut(s) | 158, 415 |
| NmeAIII | GCCGAG | 1 cut(s) | 458 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| PaeR7I | CTCGAG | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 517 |
| PleI | GAGTC | 1 cut(s) | 193 |
| PpsI | GAGTC | 1 cut(s) | 193 |
| PspFI | CCCAGC | 1 cut(s) | 482 |
| PspN4I | GGNNCC | 2 cut(s) | 158, 415 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 577 |
| RsaNI | GTAC | 1 cut(s) | 576 |
| SaqAI | TTAA | 5 cut(s) | 12, 45, 359, 387, 543 |
| Sau3AI | GATC | 3 cut(s) | 52, 190, 583 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 1 cut(s) | 279 |
| SetI | ASST | 8 cut(s) | 51, 103, 199, 266, 387, 411, 491, 551 |
| SfaNI | GCATC | 2 cut(s) | 294, 580 |
| Sfr274I | CTCGAG | 1 cut(s) | 177 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SlaI | CTCGAG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 2 cut(s) | 177, 542 |
| SmoI | CTYRAG | 2 cut(s) | 177, 542 |
| Sse9I | AATT | 1 cut(s) | 84 |
| StyD4I | CCNGG | 1 cut(s) | 277 |
| TaaI | ACNGT | 1 cut(s) | 357 |
| TaqI | TCGA | 2 cut(s) | 178, 449 |
| TaqII | GACCGA | 2 cut(s) | 204, 224 |
| TasI | AATT | 1 cut(s) | 84 |
| TfiI | GAWTC | 1 cut(s) | 517 |
| Tru1I | TTAA | 5 cut(s) | 12, 45, 359, 387, 543 |
| Tru9I | TTAA | 5 cut(s) | 12, 45, 359, 387, 543 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 17, 96, 150 |
| TspGWI | ACGGA | 1 cut(s) | 406 |
| Vha464I | CTTAAG | 1 cut(s) | 542 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| XapI | RAATTY | 1 cut(s) | 84 |
| XhoI | CTCGAG | 1 cut(s) | 177 |