RLG00000003489
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
49121693 .. 49125151
3459 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003489

Sequence Viewer

Length: 975 bp
ATGACGCGGCGGTGCTCGCATTGCAGCCACAATGGCCACAACTCCCGCACGTGCCCCAACCGCGGCGTCAAGCTCTTCGGCGTCCGCCTCACCGACGGCGGCATCAGGAAGAGTGCTAGTATGGGCAATCTGACCCACTATGCCGGGTCCGGTTCCGGTCTGCTCCATAACAACCCGGACTCTCCCGGCGAGGCTGCCGATCACTCTGGTGCCGCTGACGGTTATGCTTCTGAGGACTTCGTGCCCGGATCGTCTTCCAGCTGCCGGGAACGTAAAAAAGGCACCCCATGGACAGAGGAGGAACATAGGATGTTTTTACTTGGACTACAGAAACTTGGTAAAGGTGATTGGCGTGGAATTGCTCGCAATTATGTTATTTCAAGAACACCTACTCAAGTGGCTAGCCATGCTCAGAAATATTTCATTAGGCAGTCTAATGTATCACGGAGAAAAAGACGTTCTAGCCTGTTTGATATAGTAGCAGATGATTCAGTTGATACTCCAATGGAACCACTGGACTTCTTACCTGAAAACCATGTAGAAGATGATACTGAAAACAACCACCCATTGCCTGCTCCTCCAGCTTTGGATGAAGAATGTGAATCAATGGCATCTACCAACTCAGATGGAGAACCTTCCCCCCCAAAGGCTGATAACTCACAGTCATGTTATCCAGTGATGTATCCCACTTATTTCTCACCTTTTCCATTTCCTTTTCCAATGTGGCCTGGATACAGTACTGAGCCAACTAAGGTGGATACACACGAGGTCCTTAAACCAACGGCAGTACATTCAAAGAGCCCAATTAATGTTGACGAGCTAGTAGGCATGTCGAATCTGAGTATAGGAGAGCCTAAAGGTCAAGCCGGTCCGTCCTCGCTCTCACTAAATCTTGTTGAAGGGTCCTCTAGGCAATCGGCTTTCCATGCAAATCCAAGTTCTGGCAGTTCAAATATGAAATCAGGTTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

325

Amino Acids

35.11

Weight (kDa)

6.22

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 141 2.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 281
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 2 cut(s) 7, 63
AciI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 213
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 34
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 2 cut(s) 66, 81
AfaI GTAC 2 cut(s) 739, 789
AfiI CCNNNNNNNGG 4 cut(s) 62, 264, 646, 941
AgsI TTSAA 4 cut(s) 381, 795, 899, 951
AjnI CCWGG 1 cut(s) 727
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 4 cut(s) 73, 261, 584, 820
AluI AGCT 4 cut(s) 73, 261, 584, 820
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 968
AoxI GGCC 2 cut(s) 34, 725
ApeKI GCWGC 3 cut(s) 24, 194, 261
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 4 cut(s) 147, 769, 869, 903
AsuC2I CCSGG 5 cut(s) 145, 176, 186, 246, 266
AsuHPI GGTGA 3 cut(s) 82, 356, 690
AsuNHI GCTAGC 1 cut(s) 401
AvaII GGWCC 4 cut(s) 147, 769, 869, 903
BaeGI GKGCMC 2 cut(s) 56, 246
BalI TGGCCA 1 cut(s) 36
BanI GGYRCC 2 cut(s) 209, 281
BanII GRGCYC 1 cut(s) 803
BauI CACGAG 1 cut(s) 764
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 36, 181, 248
BccI CCATC 1 cut(s) 620
BceAI ACGGC 2 cut(s) 112, 798
BciT130I CCWGG 1 cut(s) 729
BciVI GTATCC 3 cut(s) 693, 725, 751
BcnI CCSGG 5 cut(s) 145, 176, 186, 246, 266
BfaI CTAG 5 cut(s) 117, 402, 462, 821, 909
BfmI CTRYAG 1 cut(s) 326
BfuI GTATCC 3 cut(s) 693, 725, 751
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 7 cut(s) 8, 25, 64, 100, 195, 213, 262
BlsI GCNGC 7 cut(s) 9, 26, 65, 101, 196, 214, 263
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
Bme18I GGWCC 4 cut(s) 147, 769, 869, 903
BmgT120I GGNCC 4 cut(s) 147, 769, 869, 903
BmiI GGNNCC 6 cut(s) 148, 154, 211, 283, 510, 904
BmrFI CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
BmsI GCATC 2 cut(s) 111, 620
BmtI GCTAGC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 378
BpuMI CCSGG 5 cut(s) 145, 176, 186, 246, 266
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 66, 81
BsaJI CCNNGG 2 cut(s) 61, 287
BsaWI WCCGGW 2 cut(s) 149, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 264, 646, 941
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 519, 674
Bse3DI GCAATG 2 cut(s) 19, 566
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 2 cut(s) 61, 287
BseGI GGATG 2 cut(s) 315, 595
BseLI CCNNNNNNNGG 4 cut(s) 62, 264, 646, 941
BseMI GCAATG 2 cut(s) 19, 566
BseMII CTCAG 5 cut(s) 222, 425, 636, 732, 830
BseNI ACTGG 2 cut(s) 519, 674
BseRI GAGGAG 2 cut(s) 311, 567
BseSI GKGCMC 2 cut(s) 56, 246
BseXI GCAGC 3 cut(s) 36, 181, 248
Bsh1236I CGCG 2 cut(s) 7, 63
BshFI GGCC 2 cut(s) 36, 727
BshNI GGYRCC 2 cut(s) 209, 281
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 8 cut(s) 144, 150, 156, 176, 186, 246, 265, 867
BslI CCNNNNNNNGG 4 cut(s) 62, 264, 646, 941
BsnI GGCC 2 cut(s) 36, 727
Bsp1286I GDGCHC 4 cut(s) 17, 56, 246, 803
Bsp143I GATC 2 cut(s) 199, 248
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 213
BspANI GGCC 2 cut(s) 36, 727
BspCNI CTCAG 5 cut(s) 223, 424, 635, 733, 831
BspFNI CGCG 2 cut(s) 7, 63
BspLI GGNNCC 6 cut(s) 148, 154, 211, 283, 510, 904
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 209, 281
BsrDI GCAATG 2 cut(s) 19, 566
BsrFI RCCGGY 1 cut(s) 866
BsrI ACTGG 2 cut(s) 519, 674
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 2 cut(s) 61, 287
BssMI GATC 2 cut(s) 199, 248
BssNI GRCGYC 2 cut(s) 66, 81
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 3 cut(s) 221, 663, 737
Bst6I CTCTTC 2 cut(s) 80, 104
BstACI GRCGYC 2 cut(s) 66, 81
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 4 cut(s) 17, 364, 403, 573
BstDEI CTNAG 6 cut(s) 231, 411, 622, 741, 750, 839
BstDSI CCRYGG 2 cut(s) 61, 287
BstF5I GGATG 2 cut(s) 315, 595
BstFNI CGCG 2 cut(s) 7, 63
BstKTI GATC 2 cut(s) 202, 251
BstMBI GATC 2 cut(s) 199, 248
BstMWI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 6 cut(s) 143, 174, 184, 244, 264, 727
BstSFI CTRYAG 1 cut(s) 326
BstSLI GKGCMC 2 cut(s) 56, 246
BstUI CGCG 2 cut(s) 7, 63
BstV1I GCAGC 3 cut(s) 36, 181, 248
BstV2I GAAGAC 1 cut(s) 246
BsuI GTATCC 3 cut(s) 693, 725, 751
BsuRI GGCC 2 cut(s) 36, 727
BtgI CCRYGG 2 cut(s) 61, 287
BtsCI GGATG 2 cut(s) 315, 595
BtsIMutI CAGTG 2 cut(s) 512, 681
Cac8I GCNNGC 4 cut(s) 17, 364, 403, 573
CaiI CAGNNNCTG 1 cut(s) 968
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 4 cut(s) 147, 769, 869, 903
Cfr42I CCGCGG 1 cut(s) 64
CpoI CGGWCCG 1 cut(s) 869
CseI GACGC 3 cut(s) 13, 55, 70
Csp6I GTAC 2 cut(s) 738, 788
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
CspI CGGWCCG 1 cut(s) 869
CviAII CATG 6 cut(s) 288, 407, 536, 666, 829, 926
CviQI GTAC 2 cut(s) 738, 788
DdeI CTNAG 6 cut(s) 231, 411, 622, 741, 750, 839
DpnI GATC 2 cut(s) 201, 250
DpnII GATC 2 cut(s) 199, 248
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 80, 104
EarI CTCTTC 2 cut(s) 80, 104
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 803
Eco47I GGWCC 4 cut(s) 147, 769, 869, 903
Eco72I CACGTG 1 cut(s) 51
EcoO109I RGGNCCY 2 cut(s) 769, 903
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 6 cut(s) 291, 410, 539, 669, 832, 929
FatI CATG 6 cut(s) 287, 406, 535, 665, 828, 925
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 7 cut(s) 8, 25, 64, 100, 195, 213, 262
FokI GGATG 2 cut(s) 322, 602
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 7 cut(s) 8, 25, 64, 100, 195, 213, 262
FspBI CTAG 5 cut(s) 117, 402, 462, 821, 909
GluI GCNGC 7 cut(s) 8, 25, 64, 100, 195, 213, 262
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 2 cut(s) 36, 727
HapII CCGG 8 cut(s) 144, 150, 156, 176, 186, 246, 265, 867
HgaI GACGC 3 cut(s) 13, 55, 70
Hin1I GRCGYC 2 cut(s) 66, 81
Hin1II CATG 6 cut(s) 291, 410, 539, 669, 832, 929
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 4 cut(s) 179, 488, 602, 835
HpaII CCGG 8 cut(s) 144, 150, 156, 176, 186, 246, 265, 867
HphI GGTGA 3 cut(s) 82, 356, 690
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 5 cut(s) 132, 232, 414, 625, 840
Hpy188III TCNNGA 3 cut(s) 106, 381, 969
Hpy8I GTNNAC 1 cut(s) 814
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 645, 893
HpyCH4III ACNGT 3 cut(s) 221, 663, 737
HpyCH4IV ACGT 3 cut(s) 50, 271, 457
HpyCH4V TGCA 2 cut(s) 24, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
HpyF3I CTNAG 6 cut(s) 231, 411, 622, 741, 750, 839
HpySE526I ACGT 3 cut(s) 50, 271, 457
Hsp92I GRCGYC 2 cut(s) 66, 81
Hsp92II CATG 6 cut(s) 291, 410, 539, 669, 832, 929
KspI CCGCGG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 199, 248
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 168, 580
Lsp1109I GCAGC 3 cut(s) 36, 181, 248
LweI GCATC 2 cut(s) 111, 620
MaeI CTAG 5 cut(s) 117, 402, 462, 821, 909
MaeII ACGT 3 cut(s) 50, 271, 457
MalI GATC 2 cut(s) 201, 250
MboI GATC 2 cut(s) 199, 248
MboII GAAGA 5 cut(s) 67, 121, 246, 554, 605
MhlI GDGCHC 4 cut(s) 17, 56, 246, 803
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 3 cut(s) 357, 367, 804
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 9 cut(s) 98, 184, 226, 289, 292, 588, 760, 886, 916
Mox20I TGGCCA 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 419
MscI TGGCCA 1 cut(s) 36
MseI TTAA 2 cut(s) 774, 807
MslI CAYNNNNRTG 2 cut(s) 207, 664
Msp20I TGGCCA 1 cut(s) 36
MspA1I CMGCKG 3 cut(s) 63, 215, 261
MspI CCGG 8 cut(s) 144, 150, 156, 176, 186, 246, 265, 867
MspR9I CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
MvaI CCWGG 1 cut(s) 729
MvnI CGCG 2 cut(s) 7, 63
MwoI GCNNNNNNNGC 7 cut(s) 16, 21, 33, 60, 407, 581, 926
NciI CCSGG 5 cut(s) 145, 176, 186, 246, 266
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 199, 248
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 6 cut(s) 291, 410, 539, 669, 832, 929
NlaIV GGNNCC 6 cut(s) 148, 154, 211, 283, 510, 904
NspI RCATGY 1 cut(s) 832
OliI CACNNNNGTG 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 3 cut(s) 488, 602, 835
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 7 cut(s) 9, 26, 65, 101, 196, 214, 263
PleI GAGTC 1 cut(s) 173
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 2 cut(s) 769, 903
PshBI ATTAAT 1 cut(s) 807
Psp5II RGGWCCY 2 cut(s) 769, 903
Psp6I CCWGG 1 cut(s) 727
PspCI CACGTG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 6 cut(s) 148, 154, 211, 283, 510, 904
PspPI GGNCC 4 cut(s) 147, 769, 869, 903
PspPPI RGGWCCY 2 cut(s) 769, 903
PstNI CAGNNNCTG 1 cut(s) 968
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 2 cut(s) 739, 789
RsaNI GTAC 2 cut(s) 738, 788
RseI CAYNNNNRTG 2 cut(s) 207, 664
Rsr2I CGGWCCG 1 cut(s) 869
RsrII CGGWCCG 1 cut(s) 869
SacII CCGCGG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 774, 807
SatI GCNGC 7 cut(s) 8, 25, 64, 100, 195, 213, 262
Sau3AI GATC 2 cut(s) 199, 248
Sau96I GGNCC 4 cut(s) 147, 769, 869, 903
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 6 cut(s) 145, 176, 186, 246, 266, 729
SduI GDGCHC 4 cut(s) 17, 56, 246, 803
SfaNI GCATC 2 cut(s) 111, 620
SfcI CTRYAG 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 64
SgrBI CCGCGG 1 cut(s) 64
SinI GGWCC 4 cut(s) 147, 769, 869, 903
SmiMI CAYNNNNRTG 2 cut(s) 207, 664
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 3 cut(s) 357, 367, 804
SsiI CCGC 8 cut(s) 7, 10, 46, 61, 63, 85, 99, 213
SspI AATATT 1 cut(s) 419
SspMI CTAG 5 cut(s) 117, 402, 462, 821, 909
StyD4I CCNGG 6 cut(s) 143, 174, 184, 244, 264, 727
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 221, 663, 737
TaiI ACGT 3 cut(s) 53, 274, 460
TaqI TCGA 1 cut(s) 833
TasI AATT 3 cut(s) 357, 367, 804
TatI WGTACW 2 cut(s) 737, 787
TauI GCSGC 4 cut(s) 10, 66, 102, 215
TfiI GAWTC 3 cut(s) 488, 602, 835
Tru1I TTAA 2 cut(s) 774, 807
Tru9I TTAA 2 cut(s) 774, 807
TscAI CASTG 2 cut(s) 519, 681
TseI GCWGC 3 cut(s) 24, 194, 261
TspDTI ATGAA 3 cut(s) 412, 606, 971
TspGWI ACGGA 2 cut(s) 460, 861
TspRI CASTG 2 cut(s) 519, 681
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 4 cut(s) 147, 769, 869, 903
VspI ATTAAT 1 cut(s) 807
XceI RCATGY 1 cut(s) 832
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 5 cut(s) 117, 402, 462, 821, 909
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.